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Davis W. Reconstruction of stochastic dynamics from large streamed datasets. Phys Rev E 2023; 108:054110. [PMID: 38115436 DOI: 10.1103/physreve.108.054110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2023] [Accepted: 10/16/2023] [Indexed: 12/21/2023]
Abstract
The complex dynamics of physical systems can often be modeled with stochastic differential equations. However, computational constraints inhibit the estimation of dynamics from large time-series datasets. I present a method for estimating drift and diffusion functions from inordinately large datasets through the use of incremental, online, updating statistics. I demonstrate the validity and utility of this method by analyzing three large, varied synthetic datasets, as well as an empirical turbulence dataset. This method will hopefully facilitate the analysis of complex systems from exceedingly large, "big data" scientific datasets, as well as real-time streamed data.
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Affiliation(s)
- William Davis
- Cecil H. and Ida M. Green Institute of Geophysics and Planetary Physics, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California 92037, USA
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Shirazi AH, Raoufy MR, Ebadi H, De Rui M, Schiff S, Mazloom R, Hajizadeh S, Gharibzadeh S, Dehpour AR, Amodio P, Jafari GR, Montagnese S, Mani AR. Quantifying memory in complex physiological time-series. PLoS One 2013; 8:e72854. [PMID: 24039811 PMCID: PMC3764113 DOI: 10.1371/journal.pone.0072854] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2013] [Accepted: 07/15/2013] [Indexed: 11/19/2022] Open
Abstract
In a time-series, memory is a statistical feature that lasts for a period of time and distinguishes the time-series from a random, or memory-less, process. In the present study, the concept of “memory length” was used to define the time period, or scale over which rare events within a physiological time-series do not appear randomly. The method is based on inverse statistical analysis and provides empiric evidence that rare fluctuations in cardio-respiratory time-series are ‘forgotten’ quickly in healthy subjects while the memory for such events is significantly prolonged in pathological conditions such as asthma (respiratory time-series) and liver cirrhosis (heart-beat time-series). The memory length was significantly higher in patients with uncontrolled asthma compared to healthy volunteers. Likewise, it was significantly higher in patients with decompensated cirrhosis compared to those with compensated cirrhosis and healthy volunteers. We also observed that the cardio-respiratory system has simple low order dynamics and short memory around its average, and high order dynamics around rare fluctuations.
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Affiliation(s)
- Amir H. Shirazi
- Computational Physical Sciences Research Laboratory, School of Nano-Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran
- * E-mail: (ARM); (AHS)
| | - Mohammad R. Raoufy
- Department of Physiology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran
| | - Haleh Ebadi
- Computational Physical Sciences Research Laboratory, School of Nano-Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran
| | - Michele De Rui
- Department of Medicine, University of Padova, Padova, Italy
| | - Sami Schiff
- Department of Medicine, University of Padova, Padova, Italy
| | - Roham Mazloom
- Department of Physiology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran
| | - Sohrab Hajizadeh
- Department of Physiology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran
| | - Shahriar Gharibzadeh
- Neuromuscular Systems Laboratory, Faculty of Biomedical Engineering, Amirkabir University of Technology, Tehran, Iran
| | - Ahmad R. Dehpour
- Department of Pharmacology, School of Medicine, Tehran University of Medical Sciences, Tehran, Iran
| | - Piero Amodio
- Department of Medicine, University of Padova, Padova, Italy
| | - G. Reza Jafari
- Computational Physical Sciences Research Laboratory, School of Nano-Science, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran
| | | | - Ali R. Mani
- Department of Physiology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran
- * E-mail: (ARM); (AHS)
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