1
|
Scher Y, Kumar A, Santhanam MS, Reuveni S. Continuous gated first-passage processes. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2024; 87:108101. [PMID: 39208840 DOI: 10.1088/1361-6633/ad7530] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Accepted: 08/29/2024] [Indexed: 09/04/2024]
Abstract
Gated first-passage processes, where completion depends on both hitting a target and satisfying additional constraints, are prevalent across various fields. Despite their significance, analytical solutions to basic problems remain unknown, e.g. the detection time of a diffusing particle by a gated interval, disk, or sphere. In this paper, we elucidate the challenges posed by continuous gated first-passage processes and present a renewal framework to overcome them. This framework offers a unified approach for a wide range of problems, including those with single-point, half-line, and interval targets. The latter have so far evaded exact solutions. Our analysis reveals that solutions to gated problems can be obtained directly from the ungated dynamics. This, in turn, reveals universal properties and asymptotic behaviors, shedding light on cryptic intermediate-time regimes and refining the notion of high-crypticity for continuous-space gated processes. Moreover, we extend our formalism to higher dimensions, showcasing its versatility and applicability. Overall, this work provides valuable insights into the dynamics of continuous gated first-passage processes and offers analytical tools for studying them across diverse domains.
Collapse
Affiliation(s)
- Yuval Scher
- School of Chemistry, Center for the Physics & Chemistry of Living Systems, Ratner Institute for Single Molecule Chemistry, and the Sackler Center for Computational Molecular & Materials Science, Tel Aviv University, 6997801 Tel Aviv, Israel
| | - Aanjaneya Kumar
- Department of Physics, Indian Institute of Science Education and Research, Dr Homi Bhabha Road, Pune 411008, India
| | - M S Santhanam
- Department of Physics, Indian Institute of Science Education and Research, Dr Homi Bhabha Road, Pune 411008, India
| | - Shlomi Reuveni
- School of Chemistry, Center for the Physics & Chemistry of Living Systems, Ratner Institute for Single Molecule Chemistry, and the Sackler Center for Computational Molecular & Materials Science, Tel Aviv University, 6997801 Tel Aviv, Israel
| |
Collapse
|
2
|
Radice M. First-passage functionals of Brownian motion in logarithmic potentials and heterogeneous diffusion. Phys Rev E 2023; 108:044151. [PMID: 37978608 DOI: 10.1103/physreve.108.044151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 10/11/2023] [Indexed: 11/19/2023]
Abstract
We study the statistics of random functionals Z=∫_{0}^{T}[x(t)]^{γ-2}dt, where x(t) is the trajectory of a one-dimensional Brownian motion with diffusion constant D under the effect of a logarithmic potential V(x)=V_{0}ln(x). The trajectory starts from a point x_{0} inside an interval entirely contained in the positive real axis, and the motion is evolved up to the first-exit time T from the interval. We compute explicitly the PDF of Z for γ=0, and its Laplace transform for γ≠0, which can be inverted for particular combinations of γ and V_{0}. Then we consider the dynamics in (0,∞) up to the first-passage time to the origin and obtain the exact distribution for γ>0 and V_{0}>-D. By using a mapping between Brownian motion in logarithmic potentials and heterogeneous diffusion, we extend this result to functionals measured over trajectories generated by x[over ̇](t)=sqrt[2D][x(t)]^{θ}η(t), where θ<1 and η(t) is a Gaussian white noise. We also emphasize how the different interpretations that can be given to the Langevin equation affect the results. Our findings are illustrated by numerical simulations, with good agreement between data and theory.
Collapse
Affiliation(s)
- Mattia Radice
- Max Planck Institute for the Physics of Complex Systems, 01187 Dresden, Germany
| |
Collapse
|
3
|
Giordano S, Cleri F, Blossey R. Infinite ergodicity in generalized geometric Brownian motions with nonlinear drift. Phys Rev E 2023; 107:044111. [PMID: 37198762 DOI: 10.1103/physreve.107.044111] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2022] [Accepted: 03/25/2023] [Indexed: 05/19/2023]
Abstract
Geometric Brownian motion is an exemplary stochastic processes obeying multiplicative noise, with widespread applications in several fields, e.g., in finance, in physics, and biology. The definition of the process depends crucially on the interpretation of the stochastic integrals which involves the discretization parameter α with 0≤α≤1, giving rise to the well-known special cases α=0 (Itô), α=1/2 (Fisk-Stratonovich), and α=1 (Hänggi-Klimontovich or anti-Itô). In this paper we study the asymptotic limits of the probability distribution functions of geometric Brownian motion and some related generalizations. We establish the conditions for the existence of normalizable asymptotic distributions depending on the discretization parameter α. Using the infinite ergodicity approach, recently applied to stochastic processes with multiplicative noise by E. Barkai and collaborators, we show how meaningful asymptotic results can be formulated in a transparent way.
Collapse
Affiliation(s)
- Stefano Giordano
- University of Lille, CNRS, Centrale Lille, Univ. Polytechnique Hauts-de-France, UMR 8520 - IEMN - Institut d'Électronique, de Microélectronique et de Nanotechnologie, F-59000 Lille, France
| | - Fabrizio Cleri
- University of Lille, Institut d'Électronique, de Microélectronique et de Nanotechnologie (IEMN CNRS UMR8520) and Departement de Physique, F-59652 Villeneuve d'Ascq, France
| | - Ralf Blossey
- University of Lille, Unité de Glycobiologie Structurale et Fonctionnelle (UGSF), CNRS UMR8576, F-59000 Lille, France
| |
Collapse
|
4
|
Scher Y, Lauber Bonomo O, Pal A, Reuveni S. Microscopic theory of adsorption kinetics. J Chem Phys 2023; 158:094107. [PMID: 36889971 DOI: 10.1063/5.0121359] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023] Open
Abstract
Adsorption is the accumulation of a solute at an interface that is formed between a solution and an additional gas, liquid, or solid phase. The macroscopic theory of adsorption dates back more than a century and is now well-established. Yet, despite recent advancements, a detailed and self-contained theory of single-particle adsorption is still lacking. Here, we bridge this gap by developing a microscopic theory of adsorption kinetics, from which the macroscopic properties follow directly. One of our central achievements is the derivation of the microscopic version of the seminal Ward-Tordai relation, which connects the surface and subsurface adsorbate concentrations via a universal equation that holds for arbitrary adsorption dynamics. Furthermore, we present a microscopic interpretation of the Ward-Tordai relation that, in turn, allows us to generalize it to arbitrary dimension, geometry, and initial conditions. The power of our approach is showcased on a set of hitherto unsolved adsorption problems to which we present exact analytical solutions. The framework developed herein sheds fresh light on the fundamentals of adsorption kinetics, which opens new research avenues in surface science with applications to artificial and biological sensing and to the design of nano-scale devices.
Collapse
Affiliation(s)
- Yuval Scher
- School of Chemistry, Center for the Physics and Chemistry of Living Systems, Ratner Institute for Single Molecule Chemistry, and the Sackler Center for Computational Molecular and Materials Science, Tel Aviv University, 6997801 Tel Aviv, Israel
| | - Ofek Lauber Bonomo
- School of Chemistry, Center for the Physics and Chemistry of Living Systems, Ratner Institute for Single Molecule Chemistry, and the Sackler Center for Computational Molecular and Materials Science, Tel Aviv University, 6997801 Tel Aviv, Israel
| | - Arnab Pal
- The Institute of Mathematical Sciences, CIT Campus, Taramani, Chennai 600113, India
| | - Shlomi Reuveni
- School of Chemistry, Center for the Physics and Chemistry of Living Systems, Ratner Institute for Single Molecule Chemistry, and the Sackler Center for Computational Molecular and Materials Science, Tel Aviv University, 6997801 Tel Aviv, Israel
| |
Collapse
|
5
|
Ray S, Reuveni S. Resetting transition is governed by an interplay between thermal and potential energy. J Chem Phys 2021; 154:171103. [PMID: 34241053 DOI: 10.1063/5.0049642] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A dynamical process that takes a random time to complete, e.g., a chemical reaction, may either be accelerated or hindered due to resetting. Tuning system parameters, such as temperature, viscosity, or concentration, can invert the effect of resetting on the mean completion time of the process, which leads to a resetting transition. Although the resetting transition has been recently studied for diffusion in a handful of model potentials, it is yet unknown whether the results follow any universality in terms of well-defined physical parameters. To bridge this gap, we propose a general framework that reveals that the resetting transition is governed by an interplay between the thermal and potential energy. This result is illustrated for different classes of potentials that are used to model a wide variety of stochastic processes with numerous applications.
Collapse
Affiliation(s)
- Somrita Ray
- School of Chemistry, The Center for Physics and Chemistry of Living Systems, The Raymond and Beverly Sackler Center for Computational Molecular and Materials Science, and The Ratner Center for Single Molecule Science, Tel Aviv University, Tel Aviv 69978, Israel
| | - Shlomi Reuveni
- School of Chemistry, The Center for Physics and Chemistry of Living Systems, The Raymond and Beverly Sackler Center for Computational Molecular and Materials Science, and The Ratner Center for Single Molecule Science, Tel Aviv University, Tel Aviv 69978, Israel
| |
Collapse
|
6
|
Ray S, Reuveni S. Diffusion with resetting in a logarithmic potential. J Chem Phys 2020; 152:234110. [DOI: 10.1063/5.0010549] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
Affiliation(s)
- Somrita Ray
- School of Chemistry, The Center for Physics and Chemistry of Living Systems, The Raymond and Beverly Sackler Center for Computational Molecular and Materials Science, and The Ratner Center for Single Molecule Science, Tel Aviv University, Tel Aviv 69978, Israel
| | - Shlomi Reuveni
- School of Chemistry, The Center for Physics and Chemistry of Living Systems, The Raymond and Beverly Sackler Center for Computational Molecular and Materials Science, and The Ratner Center for Single Molecule Science, Tel Aviv University, Tel Aviv 69978, Israel
| |
Collapse
|
7
|
Chen G, Gong P. Computing by modulating spontaneous cortical activity patterns as a mechanism of active visual processing. Nat Commun 2019; 10:4915. [PMID: 31664052 PMCID: PMC6820766 DOI: 10.1038/s41467-019-12918-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Accepted: 10/07/2019] [Indexed: 01/23/2023] Open
Abstract
Cortical populations produce complex spatiotemporal activity spontaneously without sensory inputs. However, the fundamental computational roles of such spontaneous activity remain unclear. Here, we propose a new neural computation mechanism for understanding how spontaneous activity is actively involved in cortical processing: Computing by Modulating Spontaneous Activity (CMSA). Using biophysically plausible circuit models, we demonstrate that spontaneous activity patterns with dynamical properties, as found in empirical observations, are modulated or redistributed by external stimuli to give rise to neural responses. We find that this CMSA mechanism of generating neural responses provides profound computational advantages, such as actively speeding up cortical processing. We further reveal that the CMSA mechanism provides a unifying explanation for many experimental findings at both the single-neuron and circuit levels, and that CMSA in response to natural stimuli such as face images is the underlying neurophysiological mechanism of perceptual "bubbles" as found in psychophysical studies.
Collapse
Affiliation(s)
- Guozhang Chen
- School of Physics, University of Sydney, Sydney, New South Wales 2006, Australia.,ARC Center of Excellence for Integrative Brain Function, University of Sydney, Sydney, New South Wales 2006, Australia
| | - Pulin Gong
- School of Physics, University of Sydney, Sydney, New South Wales 2006, Australia. .,ARC Center of Excellence for Integrative Brain Function, University of Sydney, Sydney, New South Wales 2006, Australia.
| |
Collapse
|
8
|
Leibovich N, Barkai E. Infinite ergodic theory for heterogeneous diffusion processes. Phys Rev E 2019; 99:042138. [PMID: 31108694 DOI: 10.1103/physreve.99.042138] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2018] [Indexed: 06/09/2023]
Abstract
We show the relation between processes which are modeled by a Langevin equation with multiplicative noise and infinite ergodic theory. We concentrate on a spatially dependent diffusion coefficient that behaves as D(x)∼|x-x[over ̃]|^{2-2/α} in the vicinity of a point x[over ̃], where α can be either positive or negative. We find that a nonnormalized state, also called an infinite density, describes statistical properties of the system. For processes under investigation, the time averages of a wide class of observables are obtained using an ensemble average with respect to the nonnormalized density. A Langevin equation which involves multiplicative noise may take different interpretation, Itô, Stratonovich, or Hänggi-Klimontovich, so the existence of an infinite density and the density's shape are both related to the considered interpretation and the structure of D(x).
Collapse
Affiliation(s)
- N Leibovich
- Department of Physics, Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat-Gan 5290002, Israel
| | - E Barkai
- Department of Physics, Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat-Gan 5290002, Israel
| |
Collapse
|
9
|
Aghion E, Kessler DA, Barkai E. Large Fluctuations for Spatial Diffusion of Cold Atoms. PHYSICAL REVIEW LETTERS 2017; 118:260601. [PMID: 28707920 DOI: 10.1103/physrevlett.118.260601] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2017] [Indexed: 06/07/2023]
Abstract
We use a new approach to study the large fluctuations of a heavy-tailed system, where the standard large-deviations principle does not apply. Large-deviations theory deals with tails of probability distributions and the rare events of random processes, for example, spreading packets of particles. Mathematically, it concerns the exponential falloff of the density of thin-tailed systems. Here we investigate the spatial density P_{t}(x) of laser-cooled atoms, where at intermediate length scales the shape is fat tailed. We focus on the rare events beyond this range, which dominate important statistical properties of the system. Through a novel friction mechanism induced by the laser fields, the density is explored with the recently proposed non-normalized infinite-covariant density approach. The small and large fluctuations give rise to a bifractal nature of the spreading packet. We derive general relations which extend our theory to a class of systems with multifractal moments.
Collapse
Affiliation(s)
- Erez Aghion
- Department of Physics, Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - David A Kessler
- Department of Physics, Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat-Gan 52900, Israel
| | - Eli Barkai
- Department of Physics, Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat-Gan 52900, Israel
| |
Collapse
|
10
|
Kazakevičius R, Ruseckas J. Influence of external potentials on heterogeneous diffusion processes. Phys Rev E 2016; 94:032109. [PMID: 27739692 DOI: 10.1103/physreve.94.032109] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2016] [Indexed: 06/06/2023]
Abstract
In this paper we consider heterogeneous diffusion processes with the power-law dependence of the diffusion coefficient on the position and investigate the influence of external forces on the resulting anomalous diffusion. The heterogeneous diffusion processes can yield subdiffusion as well as superdiffusion, depending on the behavior of the diffusion coefficient. We assume that not only the diffusion coefficient but also the external force has a power-law dependence on the position. We obtain analytic expressions for the transition probability in two cases: when the power-law exponent in the external force is equal to 2η-1, where 2η is the power-law exponent in the dependence of the diffusion coefficient on the position, and when the external force has a linear dependence on the position. We found that the power-law exponent in the dependence of the mean square displacement on time does not depend on the external force; this force changes only the anomalous diffusion coefficient. In addition, the external force having the power-law exponent different from 2η-1 limits the time interval where the anomalous diffusion occurs. We expect that the results obtained in this paper may be relevant for a more complete understanding of anomalous diffusion processes.
Collapse
Affiliation(s)
- Rytis Kazakevičius
- Institute of Theoretical Physics and Astronomy, Vilnius University, Saulėtekio 3, LT-10222 Vilnius, Lithuania
| | - Julius Ruseckas
- Institute of Theoretical Physics and Astronomy, Vilnius University, Saulėtekio 3, LT-10222 Vilnius, Lithuania
| |
Collapse
|
11
|
Abstract
We present an exact solution for the distribution of sample averaged monomer to monomer distance of ring polymers. For non-interacting and local-interaction models these distributions correspond to the distribution of the area under the reflected Bessel bridge and the Bessel excursion respectively, and are shown to be identical in dimension d ≥ 2, albeit with pronounced finite size effects at the critical dimension, d = 2. A symmetry of the problem reveals that dimension d and 4 - d are equivalent, thus the celebrated Airy distribution describing the areal distribution of the d = 1 Brownian excursion describes also a polymer in three dimensions. For a self-avoiding polymer in dimension d we find numerically that the fluctuations of the scaled averaged distance are nearly identical in dimension d = 2, 3 and are well described to a first approximation by the non-interacting excursion model in dimension 5.
Collapse
|
12
|
Ryabov A, Berestneva E, Holubec V. Brownian motion in time-dependent logarithmic potential: Exact results for dynamics and first-passage properties. J Chem Phys 2015; 143:114117. [PMID: 26395697 DOI: 10.1063/1.4931474] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Artem Ryabov
- Charles University in Prague, Faculty of Mathematics and Physics, Department of Macromolecular Physics, V Holešovičkách 2, 180 00 Praha 8, Czech Republic
| | - Ekaterina Berestneva
- Charles University in Prague, Faculty of Mathematics and Physics, Department of Macromolecular Physics, V Holešovičkách 2, 180 00 Praha 8, Czech Republic
| | - Viktor Holubec
- Charles University in Prague, Faculty of Mathematics and Physics, Department of Macromolecular Physics, V Holešovičkách 2, 180 00 Praha 8, Czech Republic
| |
Collapse
|
13
|
Abstract
Tissue fusion eliminates physical voids in a tissue to form a continuous structure and is central to many processes in development and repair. Fusion events in vivo, particularly in embryonic development, often involve the purse-string contraction of a pluricellular actomyosin cable at the free edge. However, in vitro, adhesion of the cells to their substrate favors a closure mechanism mediated by lamellipodial protrusions, which has prevented a systematic study of the purse-string mechanism. Here, we show that monolayers can cover well-controlled mesoscopic nonadherent areas much larger than a cell size by purse-string closure and that active epithelial fluctuations are required for this process. We have formulated a simple stochastic model that includes purse-string contractility, tissue fluctuations, and effective friction to qualitatively and quantitatively account for the dynamics of closure. Our data suggest that, in vivo, tissue fusion adapts to the local environment by coordinating lamellipodial protrusions and purse-string contractions.
Collapse
|
14
|
Kargovsky AV, Anashkina EI, Chichigina OA, Krasnova AK. Velocity distribution for quasistable acceleration in the presence of multiplicative noise. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:042133. [PMID: 23679397 DOI: 10.1103/physreve.87.042133] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2013] [Revised: 04/16/2013] [Indexed: 06/02/2023]
Abstract
Processes that are far both from equilibrium and from phase transition are studied. It is shown that a process with mean velocity that exhibits power-law growth in time can be analyzed using the Langevin equation with multiplicative noise. The solution to the corresponding Fokker-Planck equation is derived. Results of the numerical solution of the Langevin equation and simulation of the motion of particles in a billiard system with a time-dependent boundary are presented.
Collapse
Affiliation(s)
- A V Kargovsky
- Faculty of Physics, Lomonosov Moscow State University, Leninskie Gory, 119992 Moscow, Russia.
| | | | | | | |
Collapse
|
15
|
Dechant A, Lutz E, Kessler DA, Barkai E. Superaging correlation function and ergodicity breaking for Brownian motion in logarithmic potentials. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 85:051124. [PMID: 23004720 DOI: 10.1103/physreve.85.051124] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2012] [Indexed: 06/01/2023]
Abstract
We consider an overdamped Brownian particle moving in a confining asymptotically logarithmic potential, which supports a normalized Boltzmann equilibrium density. We derive analytical expressions for the two-time correlation function and the fluctuations of the time-averaged position of the particle for large but finite times. We characterize the occurrence of aging and nonergodic behavior as a function of the depth of the potential, and we support our predictions with extensive Langevin simulations. While the Boltzmann measure is used to obtain stationary correlation functions, we show how the non-normalizable infinite covariant density is related to the superaging behavior.
Collapse
Affiliation(s)
- A Dechant
- Department of Physics, University of Augsburg, 86135 Augsburg, Germany
| | | | | | | |
Collapse
|