1
|
Kay T, Giuggioli L. Subdiffusion in the Presence of Reactive Boundaries: A Generalized Feynman-Kac Approach. JOURNAL OF STATISTICAL PHYSICS 2023; 190:92. [PMID: 37128546 PMCID: PMC10140114 DOI: 10.1007/s10955-023-03105-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/24/2022] [Accepted: 04/03/2023] [Indexed: 05/03/2023]
Abstract
We derive, through subordination techniques, a generalized Feynman-Kac equation in the form of a time fractional Schrödinger equation. We relate such equation to a functional which we name the subordinated local time. We demonstrate through a stochastic treatment how this generalized Feynman-Kac equation describes subdiffusive processes with reactions. In this interpretation, the subordinated local time represents the number of times a specific spatial point is reached, with the amount of time spent there being immaterial. This distinction provides a practical advance due to the potential long waiting time nature of subdiffusive processes. The subordinated local time is used to formulate a probabilistic understanding of subdiffusion with reactions, leading to the well known radiation boundary condition. We demonstrate the equivalence between the generalized Feynman-Kac equation with a reflecting boundary and the fractional diffusion equation with a radiation boundary. We solve the former and find the first-reaction probability density in analytic form in the time domain, in terms of the Wright function. We are also able to find the survival probability and subordinated local time density analytically. These results are validated by stochastic simulations that use the subordinated local time description of subdiffusion in the presence of reactions.
Collapse
Affiliation(s)
- Toby Kay
- Department of Engineering Mathematics, University of Bristol, Bristol, BS8 1UB UK
| | - Luca Giuggioli
- Department of Engineering Mathematics, University of Bristol, Bristol, BS8 1UB UK
- Bristol Centre for Complexity Sciences, University of Bristol, Bristol, BS8 1UB UK
| |
Collapse
|
2
|
Dieball C, Godec A. Mathematical, Thermodynamical, and Experimental Necessity for Coarse Graining Empirical Densities and Currents in Continuous Space. PHYSICAL REVIEW LETTERS 2022; 129:140601. [PMID: 36240401 DOI: 10.1103/physrevlett.129.140601] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2021] [Revised: 07/19/2022] [Accepted: 07/28/2022] [Indexed: 06/16/2023]
Abstract
We present general results on fluctuations and spatial correlations of the coarse-grained empirical density and current of Markovian diffusion in equilibrium or nonequilibrium steady states on all timescales. We unravel a deep connection between current fluctuations and generalized time-reversal symmetry, providing new insight into time-averaged observables. We highlight the essential role of coarse graining in space from mathematical, thermodynamical, and experimental points of view. Spatial coarse graining is required to uncover salient features of currents that break detailed balance, and a thermodynamically "optimal" coarse graining ensures the most precise inference of dissipation. Defined without coarse graining, the fluctuations of empirical density and current are proven to diverge on all timescales in dimensions higher than one, which has far-reaching consequences for the central-limit regime in continuous space. We apply the results to examples of irreversible diffusion. Our findings provide new intuition about time-averaged observables and allow for a more efficient analysis of single-molecule experiments.
Collapse
Affiliation(s)
- Cai Dieball
- Mathematical bioPhysics Group, Max Planck Institute for Multidisciplinary Sciences, Am Faßberg 11, 37077 Göttingen
| | - Aljaž Godec
- Mathematical bioPhysics Group, Max Planck Institute for Multidisciplinary Sciences, Am Faßberg 11, 37077 Göttingen
| |
Collapse
|
3
|
Zhang S, Chen ZQ. Fokker–Planck equation for Feynman–Kac transform of anomalous processes. Stoch Process Their Appl 2022. [DOI: 10.1016/j.spa.2022.01.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
4
|
Abstract
The phenomena of subdiffusion are widely observed in physical and biological systems. To investigate the effects of external potentials, say, harmonic potential, linear potential, and time-dependent force, we study the subdiffusion described by the subordinated Langevin equation with white Gaussian noise or, equivalently, by the single Langevin equation with compound noise. If the force acts on the subordinated process, it keeps working all the time; otherwise, the force just exerts an influence on the system at the moments of jump. Some common statistical quantities, such as the ensemble- and time-averaged mean squared displacements, position autocorrelation function, correlation coefficient, and generalized Einstein relation, are discussed to distinguish the effects of various forces and different patterns of acting. The corresponding Fokker-Planck equations are also presented. All the stochastic processes discussed here are nonstationary, nonergodic, and aging.
Collapse
Affiliation(s)
- Yao Chen
- School of Mathematics and Statistics, Gansu Key Laboratory of Applied Mathematics and Complex Systems, Lanzhou University, Lanzhou 730000, People's Republic of China
| | - Xudong Wang
- School of Mathematics and Statistics, Gansu Key Laboratory of Applied Mathematics and Complex Systems, Lanzhou University, Lanzhou 730000, People's Republic of China
| | - Weihua Deng
- School of Mathematics and Statistics, Gansu Key Laboratory of Applied Mathematics and Complex Systems, Lanzhou University, Lanzhou 730000, People's Republic of China
| |
Collapse
|
5
|
Abstract
We present an exact solution for the distribution of sample averaged monomer to monomer distance of ring polymers. For non-interacting and local-interaction models these distributions correspond to the distribution of the area under the reflected Bessel bridge and the Bessel excursion respectively, and are shown to be identical in dimension d ≥ 2, albeit with pronounced finite size effects at the critical dimension, d = 2. A symmetry of the problem reveals that dimension d and 4 - d are equivalent, thus the celebrated Airy distribution describing the areal distribution of the d = 1 Brownian excursion describes also a polymer in three dimensions. For a self-avoiding polymer in dimension d we find numerically that the fluctuations of the scaled averaged distance are nearly identical in dimension d = 2, 3 and are well described to a first approximation by the non-interacting excursion model in dimension 5.
Collapse
|
6
|
Wu X, Deng W, Barkai E. Tempered fractional Feynman-Kac equation: Theory and examples. Phys Rev E 2016; 93:032151. [PMID: 27078336 DOI: 10.1103/physreve.93.032151] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2016] [Indexed: 06/05/2023]
Abstract
Functionals of Brownian and non-Brownian motions have diverse applications and attracted a lot of interest among scientists. This paper focuses on deriving the forward and backward fractional Feynman-Kac equations describing the distribution of the functionals of the space and time-tempered anomalous diffusion, belonging to the continuous time random walk class. Several examples of the functionals are explicitly treated, including the occupation time in half-space, the first passage time, the maximal displacement, the fluctuations of the occupation fraction, and the fluctuations of the time-averaged position.
Collapse
Affiliation(s)
- Xiaochao Wu
- School of Mathematics and Statistics, Gansu Key Laboratory of Applied Mathematics and Complex Systems, Lanzhou University, Lanzhou 730000, P.R. China
| | - Weihua Deng
- School of Mathematics and Statistics, Gansu Key Laboratory of Applied Mathematics and Complex Systems, Lanzhou University, Lanzhou 730000, P.R. China
| | - Eli Barkai
- Department of Physics, Advanced Materials and Nanotechnology Institute, Bar Ilan University, Ramat-Gan 52900, Israel
| |
Collapse
|
7
|
Cairoli A, Baule A. Langevin formulation of a subdiffusive continuous-time random walk in physical time. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:012102. [PMID: 26274120 DOI: 10.1103/physreve.92.012102] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2015] [Indexed: 06/04/2023]
Abstract
Systems living in complex nonequilibrated environments often exhibit subdiffusion characterized by a sublinear power-law scaling of the mean square displacement. One of the most common models to describe such subdiffusive dynamics is the continuous-time random walk (CTRW). Stochastic trajectories of a CTRW can be described in terms of the subordination of a normal diffusive process by an inverse Lévy-stable process. Here, we propose an equivalent Langevin formulation of a force-free CTRW without subordination. By introducing a different type of non-Gaussian noise, we are able to express the CTRW dynamics in terms of a single Langevin equation in physical time with additive noise. We derive the full multipoint statistics of this noise and compare it with the scaled Brownian motion (SBM), an alternative stochastic model describing subdiffusive dynamics. Interestingly, these two noises are identical up to the second order correlation functions, but different in the higher order statistics. We extend our formalism to general waiting time distributions and force fields and compare our results with those of the SBM. In the presence of external forces, our proposed noise generates a different class of stochastic processes, resembling a CTRW but with forces acting at all times.
Collapse
Affiliation(s)
- Andrea Cairoli
- School of Mathematical Sciences, Queen Mary, University of London, Mile End Road, London E1 4NS, United Kingdom
| | - Adrian Baule
- School of Mathematical Sciences, Queen Mary, University of London, Mile End Road, London E1 4NS, United Kingdom
| |
Collapse
|
8
|
Wang CY, Zong XM, Zhang H, Yi M. Fractional entropy decay and the third law of thermodynamics. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:022126. [PMID: 25215708 DOI: 10.1103/physreve.90.022126] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2013] [Indexed: 06/03/2023]
Abstract
We report in this paper a theoretical study on the quantum thermodynamic properties of a fractional damping system. Through the analysis, few nontrivial characteristics are revealed, which include (1) a fractional power-law decay entropy function, which provides an evidence for the validity of the third law of thermodynamics in the quantum dissipative region and (2) the varying of the entropy from a nonlinear divergent function to a semilinear decay function with a fractional exponent as the temperature approaches absolute zero.
Collapse
Affiliation(s)
- Chun-Yang Wang
- Shandong Provincial Key Laboratory of Laser Polarization and Information Technology, College of Physics and Engineering, Qufu Normal University, Qufu 273165, China and State Key Laboratory of Theoretical Physics, Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing 100190, China
| | - Xue-Mei Zong
- Shandong Provincial Key Laboratory of Laser Polarization and Information Technology, College of Physics and Engineering, Qufu Normal University, Qufu 273165, China
| | - Hong Zhang
- Shandong Provincial Key Laboratory of Laser Polarization and Information Technology, College of Physics and Engineering, Qufu Normal University, Qufu 273165, China
| | - Ming Yi
- Key Laboratory of Magnetic Resonance in Biological Systems, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan, China
| |
Collapse
|
9
|
Zoia A, Dumonteil E, Mazzolo A. Counting statistics: a Feynman-Kac perspective. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 85:011132. [PMID: 22400537 DOI: 10.1103/physreve.85.011132] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2011] [Indexed: 05/31/2023]
Abstract
By building upon a Feynman-Kac formalism, we assess the distribution of the number of collisions in a given region for a broad class of discrete-time random walks in absorbing and nonabsorbing media. We derive the evolution equation for the generating function of the number of collisions, and we complete our analysis by examining the moments of the distribution and their relation to the walker equilibrium density. Some significant applications are discussed in detail: in particular, we revisit the gambler's ruin problem and generalize to random walks with absorption the arcsine law for the number of collisions on the half-line.
Collapse
Affiliation(s)
- A Zoia
- CEA/Saclay, DEN/DANS/DM2S/SERMA/LTSD, F-91191 Gif-sur-Yvette, France.
| | | | | |
Collapse
|