Internal nonlinear dynamics of a short lattice DNA model in terms of propagating kink-antikink solitons

Taming intrinsic localized modes in a DNA lattice with damping, external force, and inhomogeneity

The dynamics of DNA in the presence of uniform damping and periodic force is studied. The damped and driven Joyeux-Buyukdagli model is used to investigate the formation of intrinsic localized modes (ILMs). Branches of ILMs are identified as well as their orbital stabilities. A study of the effect of inhomogeneity introduced into the DNA lattice and its ability to control chaotic behavior is conducted. It is seen that a single defect in the chain can induce synchronized spatiotemporal patterns, despite the fact that the entire set of oscillators and the impurity are chaotic when uncoupled. It is also shown that the periodic excitation applied on a specific site can drive the whole lattice into chaotic or regular spatial and temporal patterns.

Rotating polygonal depression soliton clusters on the inner surface of a liquid ring

We report an experimental observation of rotating depression soliton sets on the inner surface of a viscous liquid ring, carrying background waves. These occur within a rotating shallow layer of oil inside a stationary cylindrical container. The solitons are organized either in single, two, or regular polygonal (triangle and hexagon) clusters; they travel in unison at a higher speed than the background traveling waves. The spectral power density reveals a possible energy exchange between the soliton clusters and the background mixed radial-azimuthal modulations through wave radiation.

Collective Modes of a Soliton Train in a Fermi Superfluid

We characterize the collective modes of a soliton train in a quasi-one-dimensional Fermi superfluid, using a mean-field formalism. In addition to the expected Goldstone and Higgs modes, we find novel long-lived gapped modes associated with oscillations of the soliton cores. The soliton train has an instability that depends strongly on the interaction strength and the spacing of solitons. It can be stabilized by filling each soliton with an unpaired fermion, thus forming a commensurate Fulde-Ferrell-Larkin-Ovchinnikov (FFLO) phase. We find that such a state is always dynamically stable, which paves the way for realizing long-lived FFLO states in experiments via phase imprinting.

Spatially Extended Relativistic Particles Out of Traveling Front Solutions of Sine-Gordon Equation in (1+2) Dimensions

Slower-than-light multi-front solutions of the Sine-Gordon in (1+2) dimensions, constructed through the Hirota algorithm, are mapped onto spatially localized structures, which emulate free, spatially extended, massive relativistic particles. A localized structure is an image of the junctions at which the fronts intersect. It propagates together with the multi-front solution at the velocity of the latter. The profile of the localized structure obeys the linear wave equation in (1+2) dimensions, to which a term that represents interaction with a slower-than-light, Sine-Gordon-multi-front solution has been added. This result can be also formulated in terms of a (1+2)-dimensional Lagrangian system, in which the Sine-Gordon and wave equations are coupled. Expanding the Euler-Lagrange equations in powers of the coupling constant, the zero-order part of the solution reproduces the (1+2)-dimensional Sine-Gordon fronts. The first-order part is the spatially localized structure.

PACS

02.30.Ik, 03.65.Pm, 05.45.Yv, 02.30.Ik.