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Tang ZS, Li JJ, Zhu WJ, Ai BQ. Collective self-optimization of binary mixed heterogeneous populations. Phys Rev E 2024; 109:024405. [PMID: 38491669 DOI: 10.1103/physreve.109.024405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Accepted: 01/16/2024] [Indexed: 03/18/2024]
Abstract
To maximize the survival chances of society members, collective self-organization must balance individual interests with promoting the collective welfare. Although situations where group members have equal optimal values are clear, how varying optimal values impacts group dynamics remains unclear. To address this gap, we conducted a self-optimization study of a binary system incorporating communication-enabled active particles with distinct optimal values. We demonstrate that similar particles will spontaneously aggregate and separate from each other to maximize their individual benefits during the process of self-optimization. Our research shows that both types of particles can produce the optimal field values at low density. However, only one type of particle can achieve the optimal field values at medium density. At high densities, neither type of particle is effective in reaching the optimal field values. Interestingly, we observed that during the self-optimization process, the mixture demixed spontaneously under certain circumstances of mixed particles. Particles with higher optimal values developed into larger clusters, while particles with lower optimal values migrated outside of these clusters, resulting in the separation of the mixture. To achieve this separation, suitable noise intensity, particle density, and the significant difference in optimal values were necessary. Our results provide a more profound comprehension of the self-optimization of synthetic or biological agents' communication and provide valuable insight into separating binary species and mixtures.
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Affiliation(s)
- Zhao-Sha Tang
- Key Laboratory of Atomic and Subatomic Structure and Quantum Control (Ministry of Education), Guangdong Basic Research Center of Excellence for Structure and Fundamental Interactions of Matter, School of Physics, South China Normal University, Guangzhou 510006, China
| | - Jia-Jian Li
- Key Laboratory of Atomic and Subatomic Structure and Quantum Control (Ministry of Education), Guangdong Basic Research Center of Excellence for Structure and Fundamental Interactions of Matter, School of Physics, South China Normal University, Guangzhou 510006, China
| | - Wei-Jing Zhu
- School of Photoelectric Engineering, Guangdong Polytechnic Normal University, Guangzhou 510665, China
| | - Bao-Quan Ai
- Key Laboratory of Atomic and Subatomic Structure and Quantum Control (Ministry of Education), Guangdong Basic Research Center of Excellence for Structure and Fundamental Interactions of Matter, School of Physics, South China Normal University, Guangzhou 510006, China
- Guangdong Provincial Key Laboratory of Quantum Engineering and Quantum Materials, and Guangdong-Hong Kong Joint Laboratory of Quantum Matter, South China Normal University, Guangzhou 510006, China
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2
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Medeiros ES, Feudel U. Local control for the collective dynamics of self-propelled particles. Phys Rev E 2024; 109:014312. [PMID: 38366537 DOI: 10.1103/physreve.109.014312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Accepted: 01/02/2024] [Indexed: 02/18/2024]
Abstract
Utilizing a paradigmatic model for the motion of interacting self-propelled particles, we demonstrate that local accelerations at the level of individual particles can drive transitions between different collective dynamics, leading to a control process. We find that the ability to trigger such transitions is hierarchically distributed among the particles and can form distinctive spatial patterns within the collective. Chaotic dynamics occur during the transitions, which can be attributed to fractal basin boundaries mediating the control process. The particle hierarchies described in this paper offer decentralized capabilities for controlling artificial swarms.
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Affiliation(s)
- Everton S Medeiros
- Institute for Chemistry and Biology of the Marine Environment, Carl von Ossietzky University Oldenburg, 26111 Oldenburg, Germany
| | - Ulrike Feudel
- Institute for Chemistry and Biology of the Marine Environment, Carl von Ossietzky University Oldenburg, 26111 Oldenburg, Germany
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3
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Kryuchkov NP, Nasyrov AD, Gursky KD, Yurchenko SO. Inertia changes evolution of motility-induced phase separation in active matter across particle activity. Phys Rev E 2023; 107:044601. [PMID: 37198785 DOI: 10.1103/physreve.107.044601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Accepted: 03/14/2023] [Indexed: 05/19/2023]
Abstract
The effects of inertia in active matter and motility-induced phase separation (MIPS) have attracted growing interest but still remain poorly studied. We studied MIPS behavior in the Langevin dynamics across a broad range of particle activity and damping rate values with molecular dynamic simulations. Here we show that the MIPS stability region across particle activity values consists of several domains separated by discontinuous or sharp changes in susceptibility of mean kinetic energy. These domain boundaries have fingerprints in the system's kinetic energy fluctuations and characteristics of gas, liquid, and solid subphases, such as the number of particles, densities, or the power of energy release due to activity. The observed domain cascade is most stable at intermediate damping rates but loses its distinctness in the Brownian limit or vanishes along with phase separation at lower damping values.
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Affiliation(s)
- Nikita P Kryuchkov
- Bauman Moscow State Technical University, 2nd Baumanskaya Street 5, 105005 Moscow, Russia
| | - Artur D Nasyrov
- Bauman Moscow State Technical University, 2nd Baumanskaya Street 5, 105005 Moscow, Russia
| | - Konstantin D Gursky
- Bauman Moscow State Technical University, 2nd Baumanskaya Street 5, 105005 Moscow, Russia
| | - Stanislav O Yurchenko
- Bauman Moscow State Technical University, 2nd Baumanskaya Street 5, 105005 Moscow, Russia
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4
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Hrishikesh B, Mani E. Collective behavior of passive and active circle swimming particle mixtures. SOFT MATTER 2023; 19:225-232. [PMID: 36510815 DOI: 10.1039/d2sm01066f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
We present a numerical study on a binary mixture of passive and circle swimming, self-propelling particles which interact via the Lennard-Jones (LJ) potential in two dimensions. Using Brownian Dynamics (BD) simulations, we present state diagrams using the control parameters such as attraction strength, angular velocity, self-propulsion velocity and composition. In a symmetric mixture, the system undergoes a transition from a mixed gel to a rotating passive cluster state and finally to a homogeneous fluid state as translational activity increases. The formation of the rotating cluster of passive particles surrounded by active and passive monomers is attributed to the combined effect of composition, activity and strength of attraction of the active particles. Different phases are characterized using radial distribution functions, bond order parameters, cluster fraction and probability distribution of local volume fractions. The present study addresses comprehensively the intricate role of activity, angular velocity, inter-particle interaction and compositional variation on the phase behavior. The predictions presented in the study can be experimentally realized in synthetic colloidal swimmers and motile bacterial suspensions.
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Affiliation(s)
- Bhadra Hrishikesh
- Department of Chemical Engineering, Indian Institute of Technology Madras, Chennai, 600 036, Tamil Nadu, India.
| | - Ethayaraja Mani
- Department of Chemical Engineering, Indian Institute of Technology Madras, Chennai, 600 036, Tamil Nadu, India.
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5
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Peshkov A, McGaffigan S, Quillen AC. Synchronized oscillations in swarms of nematode Turbatrix aceti. SOFT MATTER 2022; 18:1174-1182. [PMID: 35029257 DOI: 10.1039/d1sm01572a] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
There is a recent surge of interest in the behavior of active particles that can at the same time align their direction of movement and synchronize their oscillations, known as swarmalators. While theoretical and numerical models of such systems are now abundant, no real-life examples have been shown to date. We present an experimental investigation of the collective motion of the nematode Turbatrix aceti that self-propel by body undulation. We discover that these nematodes can synchronize their body oscillations, forming striking traveling metachronal waves, which produces strong fluid flows. We uncover that the location and strength of this collective state can be controlled through the shape of the confining structure; in our case the contact angle of a droplet. This opens a way for producing controlled work such as on-demand flows or displacement of objects. We illustrate this by showing that the force generated by this state is sufficient to change the physics of evaporation of fluid droplets, by counteracting the surface-tension force, which allow us to estimate its strength. The relatively large size and ease of culture make Turbatrix aceti a promising model organism for experimental investigation of swarming and oscillating active matter capable of producing controllable work.
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Affiliation(s)
- Anton Peshkov
- Department of Physics and Astronomy, University of Rochester, Rochester, NY 14627, USA.
| | - Sonia McGaffigan
- Department of Physics and Astronomy, University of Rochester, Rochester, NY 14627, USA.
| | - Alice C Quillen
- Department of Physics and Astronomy, University of Rochester, Rochester, NY 14627, USA.
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6
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Hrishikesh B, Mani E. Collective dynamics of active circle-swimming Lennard- Jones particles. Phys Chem Chem Phys 2022; 24:19792-19798. [DOI: 10.1039/d2cp01000c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report a numerical study on collective dynamics of self-propelling and circle-swimming Lennard- Jones (LJ) particles in two dimensions using Brownian dynamics simulations. We investigate the combined role of attraction,...
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Kryuchkov NP, Yurchenko SO. Collective excitations in active fluids: Microflows and breakdown in spectral equipartition of kinetic energy. J Chem Phys 2021; 155:024902. [PMID: 34266286 DOI: 10.1063/5.0054854] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The effect of particle activity on collective excitations in active fluids of microflyers is studied. With an in silico study, we observed an oscillating breakdown of equipartition (uniform spectral distribution) of kinetic energy in reciprocal space. The phenomenon is related to short-range velocity-velocity correlations that were realized without forming of long-lived mesoscale vortices in the system. This stands in contrast to well-known mesoscale turbulence operating in active nematic systems (bacterial or artificial) and reveals the features of collective dynamics in active fluids, which should be important for structural transitions and glassy dynamics in active matter.
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Affiliation(s)
- Nikita P Kryuchkov
- Bauman Moscow State Technical University, 2nd Baumanskaya str. 5, 105005 Moscow, Russia
| | - Stanislav O Yurchenko
- Bauman Moscow State Technical University, 2nd Baumanskaya str. 5, 105005 Moscow, Russia
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Xia YQ, Shen ZL, Tian WD, Chen K. Unfolding of a diblock chain and its anomalous diffusion induced by active particles. J Chem Phys 2019; 150:154903. [PMID: 31005072 DOI: 10.1063/1.5095850] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022] Open
Abstract
We study the structural and dynamical behavior of an A-B diblock chain in the bath of active Brownian particles (ABPs) by Brownian dynamics simulations in two dimensions. We are interested in the situation that the effective interaction between the A segments is attractive, while that between the B segments is repulsive. Therefore, in thermal (nonactive) equilibrium, the A block "folds" into a compact globule, while the B block is in the expanded coil state. Interestingly, we find that the A block could "unfold" sequentially like unknitting a sweater, driven by the surrounding ABPs when the propelling strength on them is beyond a certain value. This threshold value decreases and then levels off as the length of the B block increases. We also find a simple power-law relation between the unfolding time of the A block and the self-propelling strength and an exponential relation between the unfolding time and the length of the B block. Finally, we probe the translational and rotational diffusion of the chain and find that both of them show "super-diffusivity" in a large time window, especially when the self-propelling strength is small and the A block is in the folded state. Such super-diffusivity is due to the strong asymmetric distribution of ABPs around the chain. Our work provides new insights into the behavior of a polymer chain in the environment of active objects.
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Affiliation(s)
- Yi-Qi Xia
- Center for Soft Condensed Matter Physics and Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China
| | - Zhuang-Lin Shen
- Center for Soft Condensed Matter Physics and Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China
| | - Wen-de Tian
- Center for Soft Condensed Matter Physics and Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China
| | - Kang Chen
- Center for Soft Condensed Matter Physics and Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China
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9
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Arango-Restrepo A, Barragán D, Rubi JM. Self-assembling outside equilibrium: emergence of structures mediated by dissipation. Phys Chem Chem Phys 2019; 21:17475-17493. [DOI: 10.1039/c9cp01088b] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Self-assembly under non-equilibrium conditions may give rise to the formation of structures not available at equilibrium.
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Affiliation(s)
- A. Arango-Restrepo
- Departament de Física de la Matéria Condensada
- Facultat de Física
- Universitat de Barcelona
- 08028 Barcelona
- Spain
| | - D. Barragán
- Escuela de Química
- Facultad de Ciencias
- Universidad Nacional de Colombia
- Medellín
- Colombia
| | - J. M. Rubi
- Departament de Física de la Matéria Condensada
- Facultat de Física
- Universitat de Barcelona
- 08028 Barcelona
- Spain
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10
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Farkas IJ, Wang S. Spatial flocking: Control by speed, distance, noise and delay. PLoS One 2018; 13:e0191745. [PMID: 29727441 PMCID: PMC5935395 DOI: 10.1371/journal.pone.0191745] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2017] [Accepted: 01/10/2018] [Indexed: 11/18/2022] Open
Abstract
Fish, birds, insects and robots frequently swim or fly in groups. During their three dimensional collective motion, these agents do not stop, they avoid collisions by strong short-range repulsion, and achieve group cohesion by weak long-range attraction. In a minimal model that is isotropic, and continuous in both space and time, we demonstrate that (i) adjusting speed to a preferred value, combined with (ii) radial repulsion and an (iii) effective long-range attraction are sufficient for the stable ordering of autonomously moving agents in space. Our results imply that beyond these three rules ordering in space requires no further rules, for example, explicit velocity alignment, anisotropy of the interactions or the frequent reversal of the direction of motion, friction, elastic interactions, sticky surfaces, a viscous medium, or vertical separation that prefers interactions within horizontal layers. Noise and delays are inherent to the communication and decisions of all moving agents. Thus, next we investigate their effects on ordering in the model. First, we find that the amount of noise necessary for preventing the ordering of agents is not sufficient for destroying order. In other words, for realistic noise amplitudes the transition between order and disorder is rapid. Second, we demonstrate that ordering is more sensitive to displacements caused by delayed interactions than to uncorrelated noise (random errors). Third, we find that with changing interaction delays the ordered state disappears at roughly the same rate, whereas it emerges with different rates. In summary, we find that the model discussed here is simple enough to allow a fair understanding of the modeled phenomena, yet sufficiently detailed for the description and management of large flocks with noisy and delayed interactions. Our code is available at http://github.com/fij/floc.
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Affiliation(s)
- Illés J. Farkas
- Department of Automation Control, Huazhong University of Science and Technology, 1037 Luoyu Rd, Wuhan, China, 430074
- MTA-ELTE Statistical and Biological Physics Research Group, Hungarian Academy of Sciences, Pázmány Péter sétány 1A, Budapest, Hungary, 1117
- * E-mail:
| | - Shuohong Wang
- School of Computer Science, Fudan University, 825 Zhangheng Rd, Shanghai, China, 201203
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11
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12
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Dou Y, Cartier CA, Fei W, Pandey S, Razavi S, Kretzschmar I, Bishop KJM. Directed Motion of Metallodielectric Particles by Contact Charge Electrophoresis. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016; 32:13167-13173. [PMID: 27951714 DOI: 10.1021/acs.langmuir.6b03361] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
We investigate the dynamics of metallodielectric Janus particles moving via contact charge electrophoresis (CCEP) between two parallel electrodes. CCEP uses a constant voltage to repeatedly charge and actuate conductive particles within a dielectric fluid, resulting in rapid oscillatory motion between the electrodes. In addition to particle oscillations, we find that micrometer-scale Janus particles move perpendicular to the field at high speeds (up to 600 μm/s) and over large distances. We characterize particle motions and propose a mechanism based on the rotation-induced translation of the particle following charge transfer at the electrode surface. The propulsion mechanism is supported both by experiments with fluorescent particles that reveal their rotational motions and by simulations of CCEP dynamics that capture the relevant electrostatics and hydrodynamics. We also show that interactions among multiple particles can lead to repulsion, attraction, and/or cooperative motions depending on the position and phase of the respective particle oscillators. Our results demonstrate how particle asymmetries can be used to direct the motions of active colloids powered by CCEP.
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Affiliation(s)
- Yong Dou
- Department of Chemical Engineering, Columbia University , New York, New York 10027, United States
| | - Charles A Cartier
- Department of Chemical Engineering, The Pennsylvania State University , University Park, Pennsylvania 16802, United States
| | - Wenjie Fei
- Department of Chemical Engineering, Columbia University , New York, New York 10027, United States
| | - Shashank Pandey
- Department of Chemical Engineering, Columbia University , New York, New York 10027, United States
| | - Sepideh Razavi
- Department of Chemical Engineering, City College of the City University of New York , New York, New York 10031, United States
| | - Ilona Kretzschmar
- Department of Chemical Engineering, City College of the City University of New York , New York, New York 10031, United States
| | - Kyle J M Bishop
- Department of Chemical Engineering, Columbia University , New York, New York 10027, United States
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13
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Chuang YL, Chou T, D'Orsogna MR. Swarming in viscous fluids: Three-dimensional patterns in swimmer- and force-induced flows. Phys Rev E 2016; 93:043112. [PMID: 27176395 DOI: 10.1103/physreve.93.043112] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2016] [Indexed: 12/23/2022]
Abstract
We derive a three-dimensional theory of self-propelled particle swarming in a viscous fluid environment. Our model predicts emergent collective behavior that depends critically on fluid opacity, mechanism of self-propulsion, and type of particle-particle interaction. In "clear fluids" swimmers have full knowledge of their surroundings and can adjust their velocities with respect to the lab frame, while in "opaque fluids" they control their velocities only in relation to the local fluid flow. We also show that "social" interactions that affect only a particle's propensity to swim towards or away from neighbors induces a flow field that is qualitatively different from the long-ranged flow fields generated by direct "physical" interactions. The latter can be short-ranged but lead to much longer-ranged fluid-mediated hydrodynamic forces, effectively amplifying the range over which particles interact. These different fluid flows conspire to profoundly affect swarm morphology, kinetically stabilizing or destabilizing swarm configurations that would arise in the absence of fluid. Depending upon the overall interaction potential, the mechanism of swimming ( e.g., pushers or pullers), and the degree of fluid opaqueness, we discover a number of new collective three-dimensional patterns including flocks with prolate or oblate shapes, recirculating pelotonlike structures, and jetlike fluid flows that entrain particles mediating their escape from the center of mill-like structures. Our results reveal how the interplay among general physical elements influence fluid-mediated interactions and the self-organization, mobility, and stability of new three-dimensional swarms and suggest how they might be used to kinetically control their collective behavior.
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Affiliation(s)
- Yao-Li Chuang
- Department of Mathematics, CSUN, Los Angeles, California 91330-8313, USA, and Department of Biomathematics, UCLA, Los Angeles, California 90095-1766, USA
| | - Tom Chou
- Departments of Biomathematics and Mathematics, UCLA, Los Angeles, California 90095-1766, USA
| | - Maria R D'Orsogna
- Department of Mathematics, CSUN, Los Angeles, California 91330-8313, USA, and Department of Biomathematics, UCLA, Los Angeles, California 90095-1766, USA
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14
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Tagliazucchi M, Szleifer I. Dynamics of dissipative self-assembly of particles interacting through oscillatory forces. Faraday Discuss 2016; 186:399-418. [DOI: 10.1039/c5fd00115c] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Dissipative self-assembly is the formation of ordered structures far from equilibrium, which continuously uptake energy and dissipate it into the environment. Due to its dynamical nature, dissipative self-assembly can lead to new phenomena and possibilities of self-organization that are unavailable to equilibrium systems. Understanding the dynamics of dissipative self-assembly is required in order to direct the assembly to structures of interest. In the present work, Brownian dynamics simulations and analytical theory were used to study the dynamics of self-assembly of a mixture of particles coated with weak acids and bases under continuous oscillations of the pH. The pH of the system modulates the charge of the particles and, therefore, the interparticle forces oscillate in time. This system produces a variety of self-assembled structures, including colloidal molecules, fibers and different types of crystalline lattices. The most important conclusions of our study are: (i) in the limit of fast oscillations, the whole dynamics (and not only those at the non-equilibrium steady state) of a system of particles interacting through time-oscillating interparticle forces can be described by an effective potential that is the time average of the time-dependent potential over one oscillation period; (ii) the oscillation period is critical to determine the order of the system. In some cases the order is favored by very fast oscillations while in others small oscillation frequencies increase the order. In the latter case, it is shown that slow oscillations remove kinetic traps and, thus, allow the system to evolve towards the most stable non-equilibrium steady state.
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Affiliation(s)
- M. Tagliazucchi
- Department of Biomedical Engineering
- Department of Chemistry and Chemistry of Life Processes Institute
- Northwestern University
- Evanston
- USA
| | - I. Szleifer
- Department of Biomedical Engineering
- Department of Chemistry and Chemistry of Life Processes Institute
- Northwestern University
- Evanston
- USA
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15
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Abstract
Small autonomous machines like biological cells or soft robots can convert energy input into control of function and form. It is desired that this behavior emerges spontaneously and can be easily switched over time. For this purpose we introduce an active matter system that is loosely inspired by biology and which we term an active colloidal cell. The active colloidal cell consists of a boundary and a fluid interior, both of which are built from identical rotating spinners whose activity creates convective flows. Similarly to biological cell motility, which is driven by cytoskeletal components spread throughout the entire volume of the cell, active colloidal cells are characterized by highly distributed energy conversion. We demonstrate that we can control the shape of the active colloidal cell and drive compartmentalization by varying the details of the boundary (hard vs. flexible) and the character of the spinners (passive vs. active). We report buckling of the boundary controlled by the pattern of boundary activity, as well as formation of core-shell and inverted Janus phase-separated configurations within the active cell interior. As the cell size is increased, the inverted Janus configuration spontaneously breaks its mirror symmetry. The result is a bubble-crescent configuration, which alternates between two degenerate states over time and exhibits collective migration of the fluid along the boundary. Our results are obtained using microscopic, non-momentum-conserving Langevin dynamics simulations and verified via a phase-field continuum model coupled to a Navier-Stokes equation.
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16
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van Drongelen R, Pal A, Goodrich CP, Idema T. Collective dynamics of soft active particles. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:032706. [PMID: 25871143 DOI: 10.1103/physreve.91.032706] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2014] [Indexed: 06/04/2023]
Abstract
We present a model of soft active particles that leads to a rich array of collective behavior found also in dense biological swarms of bacteria and other unicellular organisms. Our model uses only local interactions, such as Vicsek-type nearest-neighbor alignment, short-range repulsion, and a local boundary term. Changing the relative strength of these interactions leads to migrating swarms, rotating swarms, and jammed swarms, as well as swarms that exhibit run-and-tumble motion, alternating between migration and either rotating or jammed states. Interestingly, although a migrating swarm moves slower than an individual particle, the diffusion constant can be up to three orders of magnitude larger, suggesting that collective motion can be highly advantageous, for example, when searching for food.
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Affiliation(s)
- Ruben van Drongelen
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands
| | - Anshuman Pal
- Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Carl P Goodrich
- Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Timon Idema
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands
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17
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Dissipative self-assembly of particles interacting through time-oscillatory potentials. Proc Natl Acad Sci U S A 2014; 111:9751-6. [PMID: 24958868 DOI: 10.1073/pnas.1406122111] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Dissipative self-assembly is the emergence of order within a system due to the continuous input of energy. This form of nonequilibrium self-organization allows the creation of structures that are inaccessible in equilibrium self-assembly. However, design strategies for dissipative self-assembly are limited by a lack of fundamental understanding of the process. This work proposes a novel route for dissipative self-assembly via the oscillation of interparticle potentials. It is demonstrated that in the limit of fast potential oscillations the structure of the system is exactly described by an effective potential that is the time average of the oscillatory potential. This effective potential depends on the shape of the oscillations and can lead to effective interactions that are physically inaccessible in equilibrium. As a proof of concept, Brownian dynamics simulations were performed on a binary mixture of particles coated by weak acids and weak bases under externally controlled oscillations of pH. Dissipative steady-state structures were formed when the period of the pH oscillations was smaller than the diffusional timescale of the particles, whereas disordered oscillating structures were observed for longer oscillation periods. Some of the dissipative structures (dimers, fibers, and honeycombs) cannot be obtained in equilibrium (fixed pH) simulations for the same system of particles. The transition from dissipative self-assembled structures for fast oscillations to disordered oscillating structures for slow oscillations is characterized by a maximum in the energy dissipated per oscillation cycle. The generality of the concept is demonstrated in a second system with oscillating particle sizes.
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18
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Ortiz D, Kohlstedt KL, Nguyen TD, Glotzer SC. Self-assembly of reconfigurable colloidal molecules. SOFT MATTER 2014; 10:3541-52. [PMID: 24756150 DOI: 10.1039/c4sm00026a] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
The lock-and-key colloidal particles of Sacanna et al. are novel "dynamic" building blocks consisting of a central spherical colloidal particle (key) attached to a finite number of dimpled colloidal particles (locks) via depletion interactions strong enough to bind the particles together but weak enough that the locks are free to rotate around the key. This rotation imbues a mechanical reconfigurability to these colloidal "molecules". Here we use molecular simulation to predict that these lock-and-key building blocks can self-assemble into a wide array of complex crystalline structures that are tunable via a set of reconfigurability dimensions: the number of locks per building block, bond length, size ratio, confinement, and lock mobility. We demonstrate that, with reconfigurability, ordered structures - such as random triangle square tilings - assemble, despite being kinetically inaccessible with non-reconfigurable but similar building blocks.
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Affiliation(s)
- Daniel Ortiz
- Department of Material Sciences and Engineering, University of Michigan, Ann Arbor, MI 48109, USA
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Nguyen NHP, Klotsa D, Engel M, Glotzer SC. Emergent collective phenomena in a mixture of hard shapes through active rotation. PHYSICAL REVIEW LETTERS 2014; 112:075701. [PMID: 24579615 DOI: 10.1103/physrevlett.112.075701] [Citation(s) in RCA: 126] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2013] [Indexed: 06/03/2023]
Abstract
We investigate collective phenomena with rotationally driven spinners of concave shape. Each spinner experiences a constant internal torque in either a clockwise or counterclockwise direction. Although the spinners are modeled as hard, otherwise noninteracting rigid bodies, their active motion induces an effective interaction that favors rotation in the same direction. With increasing density and activity, phase separation occurs via spinodal decomposition, as well as self-organization into rotating crystals. We observe the emergence of cooperative, superdiffusive motion along interfaces, which can transport inactive test particles. Our results demonstrate novel phase behavior of actively rotated particles that is not possible with linear propulsion or in nondriven, equilibrium systems of identical hard particles.
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Affiliation(s)
- Nguyen H P Nguyen
- Department of Mechanical Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Daphne Klotsa
- Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Michael Engel
- Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA
| | - Sharon C Glotzer
- Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA and Department of Materials Science and Engineering, University of Michigan, Ann Arbor, Michigan 48109, USA
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