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Frydel D. Statistical mechanics of passive Brownian particles in a fluctuating harmonic trap. Phys Rev E 2024; 110:024613. [PMID: 39294941 DOI: 10.1103/physreve.110.024613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2024] [Accepted: 08/15/2024] [Indexed: 09/21/2024]
Abstract
We consider passive Brownian particles trapped in an "imperfect" harmonic trap. The trap is imperfect because it is randomly turned off and on, and as a result particles fail to equilibrate. Another way to think about this is to say that a harmonic trap is time dependent on account of its strength evolving stochastically in time. Particles in such a system are passive and activity arises through external control of a trapping potential, thus, no internal energy is used to power particle motion. A stationary Fokker-Planck equation of this system can be represented as a third-order differential equation, and its solution, a stationary distribution, can be represented as a superposition of Gaussian distributions for different strengths of a harmonic trap. This permits us to interpret a stationary system as a system in equilibrium with quenched disorder.
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Loos SAM, Hermann S, Klapp SHL. Medium Entropy Reduction and Instability in Stochastic Systems with Distributed Delay. ENTROPY (BASEL, SWITZERLAND) 2021; 23:696. [PMID: 34073091 PMCID: PMC8229647 DOI: 10.3390/e23060696] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Revised: 05/20/2021] [Accepted: 05/26/2021] [Indexed: 11/17/2022]
Abstract
Many natural and artificial systems are subject to some sort of delay, which can be in the form of a single discrete delay or distributed over a range of times. Here, we discuss the impact of this distribution on (thermo-)dynamical properties of time-delayed stochastic systems. To this end, we study a simple classical model with white and colored noise, and focus on the class of Gamma-distributed delays which includes a variety of distinct delay distributions typical for feedback experiments and biological systems. A physical application is a colloid subject to time-delayed feedback control, which is, in principle, experimentally realizable by co-moving optical traps. We uncover several unexpected phenomena in regard to the system's linear stability and its thermodynamic properties. First, increasing the mean delay time can destabilize or stabilize the process, depending on the distribution of the delay. Second, for all considered distributions, the heat dissipated by the controlled system (e.g., the colloidal particle) can become negative, which implies that the delay force extracts energy and entropy of the bath. As we show here, this refrigerating effect is particularly pronounced for exponential delay. For a specific non-reciprocal realization of a control device, we find that the entropic costs, measured by the total entropy production of the system plus controller, are the lowest for exponential delay. The exponential delay further yields the largest stable parameter regions. In this sense, exponential delay represents the most effective and robust type of delayed feedback.
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Affiliation(s)
- Sarah A. M. Loos
- Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany;
- ICTP—The Abdus Salam International Centre for Theoretical Physics, Strada Costiera 11, 34151 Trieste, Italy
- Institut für Theoretische Physik, Universität Leipzig, Brüderstraße 15, 04103 Leipzig, Germany
| | - Simon Hermann
- Institut für Physik, Humboldt-Universität zu Berlin, Newtonstr. 15, 12489 Berlin, Germany;
| | - Sabine H. L. Klapp
- Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany;
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Paneru G, Dutta S, Tlusty T, Pak HK. Reaching and violating thermodynamic uncertainty bounds in information engines. Phys Rev E 2020; 102:032126. [PMID: 33075942 DOI: 10.1103/physreve.102.032126] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Accepted: 08/31/2020] [Indexed: 06/11/2023]
Abstract
Thermodynamic uncertainty relations (TURs) set fundamental bounds on the fluctuation and dissipation of stochastic systems. Here, we examine these bounds, in experiment and theory, by exploring the entire phase space of a cyclic information engine operating in a nonequilibrium steady state. Close to its maximal efficiency, we find that the engine violates the original TUR. This experimental demonstration of TUR violation agrees with recently proposed softer bounds: The engine satisfies two generalized TUR bounds derived from the detailed fluctuation theorem with feedback control and another bound linking fluctuation and dissipation to mutual information and Renyi divergence. We examine how the interplay of work fluctuation and dissipation shapes the information conversion efficiency of the engine, and find that dissipation is minimal at a finite noise level, where the original TUR is violated.
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Affiliation(s)
- Govind Paneru
- Center for Soft and Living Matter, Institute for Basic Science (IBS), Ulsan 44919, South Korea
| | - Sandipan Dutta
- Center for Soft and Living Matter, Institute for Basic Science (IBS), Ulsan 44919, South Korea
| | - Tsvi Tlusty
- Center for Soft and Living Matter, Institute for Basic Science (IBS), Ulsan 44919, South Korea
- Department of Physics, Ulsan National Institute of Science and Technology, Ulsan 44919, South Korea
| | - Hyuk Kyu Pak
- Center for Soft and Living Matter, Institute for Basic Science (IBS), Ulsan 44919, South Korea
- Department of Physics, Ulsan National Institute of Science and Technology, Ulsan 44919, South Korea
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Mandal D, Klymko K, DeWeese MR. Entropy Production and Fluctuation Theorems for Active Matter. PHYSICAL REVIEW LETTERS 2017; 119:258001. [PMID: 29303303 DOI: 10.1103/physrevlett.119.258001] [Citation(s) in RCA: 70] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2017] [Indexed: 05/18/2023]
Abstract
Active biological systems reside far from equilibrium, dissipating heat even in their steady state, thus requiring an extension of conventional equilibrium thermodynamics and statistical mechanics. In this Letter, we have extended the emerging framework of stochastic thermodynamics to active matter. In particular, for the active Ornstein-Uhlenbeck model, we have provided consistent definitions of thermodynamic quantities such as work, energy, heat, entropy, and entropy production at the level of single, stochastic trajectories and derived related fluctuation relations. We have developed a generalization of the Clausius inequality, which is valid even in the presence of the non-Hamiltonian dynamics underlying active matter systems. We have illustrated our results with explicit numerical studies.
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Affiliation(s)
- Dibyendu Mandal
- Department of Physics, University of California, Berkeley, California 94720, USA
| | - Katherine Klymko
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Michael R DeWeese
- Department of Physics, University of California, Berkeley, California 94720, USA
- Redwood Center for Theoretical Neuroscience and Helen Wills Neuroscience Institute, University of California, Berkeley, California 94720, USA
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Boyd AB, Mandal D, Crutchfield JP. Correlation-powered information engines and the thermodynamics of self-correction. Phys Rev E 2017; 95:012152. [PMID: 28208508 DOI: 10.1103/physreve.95.012152] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2016] [Indexed: 05/23/2023]
Abstract
Information engines can use structured environments as a resource to generate work by randomizing ordered inputs and leveraging the increased Shannon entropy to transfer energy from a thermal reservoir to a work reservoir. We give a broadly applicable expression for the work production of an information engine, generally modeled as a memoryful channel that communicates inputs to outputs as it interacts with an evolving environment. The expression establishes that an information engine must have more than one memory state in order to leverage input environment correlations. To emphasize this functioning, we designed an information engine powered solely by temporal correlations and not by statistical biases, as employed by previous engines. Key to this is the engine's ability to synchronize-the engine automatically returns to a desired dynamical phase when thrown into an unwanted, dissipative phase by corruptions in the input-that is, by unanticipated environmental fluctuations. This self-correcting mechanism is robust up to a critical level of corruption, beyond which the system fails to act as an engine. We give explicit analytical expressions for both work and critical corruption level and summarize engine performance via a thermodynamic-function phase diagram over engine control parameters. The results reveal a thermodynamic mechanism based on nonergodicity that underlies error correction as it operates to support resilient engineered and biological systems.
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Affiliation(s)
- Alexander B Boyd
- Complexity Sciences Center and Physics Department, University of California at Davis, One Shields Avenue, Davis, California 95616, USA
| | - Dibyendu Mandal
- Department of Physics, University of California, Berkeley, California 94720, USA
| | - James P Crutchfield
- Complexity Sciences Center and Physics Department, University of California at Davis, One Shields Avenue, Davis, California 95616, USA
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Maxwell's demon in biochemical signal transduction with feedback loop. Nat Commun 2015; 6:7498. [PMID: 26099556 PMCID: PMC4557369 DOI: 10.1038/ncomms8498] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2014] [Accepted: 05/12/2015] [Indexed: 11/17/2022] Open
Abstract
Signal transduction in living cells is vital to maintain life itself, where information transfer in noisy environment plays a significant role. In a rather different context, the recent intensive research on ‘Maxwell's demon'—a feedback controller that utilizes information of individual molecules—have led to a unified theory of information and thermodynamics. Here we combine these two streams of research, and show that the second law of thermodynamics with information reveals the fundamental limit of the robustness of signal transduction against environmental fluctuations. Especially, we find that the degree of robustness is quantitatively characterized by an informational quantity called transfer entropy. Our information-thermodynamic approach is applicable to biological communication inside cells, in which there is no explicit channel coding in contrast to artificial communication. Our result could open up a novel biophysical approach to understand information processing in living systems on the basis of the fundamental information–thermodynamics link. The connection between information and thermodynamics is embodied in the figure of Maxwell's demon, a feedback controller. Here, the authors apply thermodynamics of information to signal transduction in chemotaxis of E. coli, predicting that its robustness is quantified by transfer entropy.
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Barato AC, Seifert U. Stochastic thermodynamics with information reservoirs. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:042150. [PMID: 25375481 DOI: 10.1103/physreve.90.042150] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2014] [Indexed: 05/10/2023]
Abstract
We generalize stochastic thermodynamics to include information reservoirs. Such information reservoirs, which can be modeled as a sequence of bits, modify the second law. For example, work extraction from a system in contact with a single heat bath becomes possible if the system also interacts with an information reservoir. We obtain an inequality, and the corresponding fluctuation theorem, generalizing the standard entropy production of stochastic thermodynamics. From this inequality we can derive an information processing entropy production, which gives the second law in the presence of information reservoirs. We also develop a systematic linear response theory for information processing machines. For a unicyclic machine powered by an information reservoir, the efficiency at maximum power can deviate from the standard value of 1/2. For the case where energy is consumed to erase the tape, the efficiency at maximum erasure rate is found to be 1/2.
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Affiliation(s)
- Andre C Barato
- II. Institut für Theoretische Physik, Universität Stuttgart, 70550 Stuttgart, Germany
| | - Udo Seifert
- II. Institut für Theoretische Physik, Universität Stuttgart, 70550 Stuttgart, Germany
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Barato AC, Seifert U. Unifying three perspectives on information processing in stochastic thermodynamics. PHYSICAL REVIEW LETTERS 2014; 112:090601. [PMID: 24655235 DOI: 10.1103/physrevlett.112.090601] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2013] [Indexed: 05/16/2023]
Abstract
So far, feedback-driven systems have been discussed using (i) measurement and control, (ii) a tape interacting with a system, or (iii) by identifying an implicit Maxwell demon in steady-state transport. We derive the corresponding second laws from one master fluctuation theorem and discuss their relationship. In particular, we show that both the entropy production involving mutual information between system and controller and the one involving a Shannon entropy difference of an information reservoir like a tape carry an extra term different from the usual current times affinity. We, thus, generalize stochastic thermodynamics to the presence of an information reservoir.
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Affiliation(s)
- A C Barato
- II. Institut für Theoretische Physik, Universität Stuttgart, 70550 Stuttgart, Germany
| | - U Seifert
- II. Institut für Theoretische Physik, Universität Stuttgart, 70550 Stuttgart, Germany
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Ito S, Sagawa T. Information thermodynamics on causal networks. PHYSICAL REVIEW LETTERS 2013; 111:180603. [PMID: 24237500 DOI: 10.1103/physrevlett.111.180603] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2013] [Revised: 10/09/2013] [Indexed: 06/02/2023]
Abstract
We study nonequilibrium thermodynamics of complex information flows induced by interactions between multiple fluctuating systems. Characterizing nonequilibrium dynamics by causal networks (i.e., Bayesian networks), we obtain novel generalizations of the second law of thermodynamics and the fluctuation theorem, which include an informational quantity characterized by the topology of the causal network. Our result implies that the entropy production in a single system in the presence of multiple other systems is bounded by the information flow between these systems. We demonstrate our general result by a simple model of biochemical adaptation.
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Affiliation(s)
- Sosuke Ito
- Department of Physics, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
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Pal A, Sabhapandit S. Work fluctuations for a Brownian particle in a harmonic trap with fluctuating locations. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:022138. [PMID: 23496490 DOI: 10.1103/physreve.87.022138] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2012] [Indexed: 06/01/2023]
Abstract
We consider a Brownian particle in a harmonic trap. The location of the trap is modulated according to an Ornstein-Uhlenbeck process. We investigate the fluctuation of the work done by the modulated trap on the Brownian particle in a given time interval in the steady state. We compute the large deviation as well as the complete asymptotic form of the probability density function of the work done. The theoretical asymptotic forms of the probability density function are in very good agreement with the numerics. We also discuss the validity of the fluctuation theorem for this system.
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Affiliation(s)
- Arnab Pal
- Raman Research Institute, Bangalore 560080, India
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