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Qiu S, Sun K, Di Z. Long-range connections are crucial for synchronization transition in a computational model of Drosophila brain dynamics. Sci Rep 2022; 12:20104. [PMID: 36418353 PMCID: PMC9684149 DOI: 10.1038/s41598-022-17544-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Accepted: 07/27/2022] [Indexed: 11/24/2022] Open
Abstract
The synchronization transition type has been the focus of attention in recent years because it is associated with many functional characteristics of the brain. In this paper, the synchronization transition in neural networks with sleep-related biological drives in Drosophila is investigated. An electrical synaptic neural network is established to research the difference between the synchronization transition of the network during sleep and wake, in which neurons regularly spike during sleep and chaotically spike during wake. The synchronization transition curves are calculated mainly using the global instantaneous order parameters S. The underlying mechanisms and types of synchronization transition during sleep are different from those during wake. During sleep, regardless of the network structure, a frustrated (discontinuous) transition can be observed. Moreover, the phenomenon of quasi periodic partial synchronization is observed in ring-shaped regular network with and without random long-range connections. As the network becomes dense, the synchronization of the network only needs to slightly increase the coupling strength g. While during wake, the synchronization transition of the neural network is very dependent on the network structure, and three mechanisms of synchronization transition have emerged: discontinuous synchronization (explosive synchronization and frustrated synchronization), and continuous synchronization. The random long-range connections is the main topological factor that plays an important role in the resulting synchronization transition. Furthermore, similarities and differences are found by comparing synchronization transition research for the Hodgkin-Huxley neural network in the beta-band and gammma-band, which can further improve the synchronization phase transition research of biologically motivated neural networks. A complete research framework can also be used to study coupled nervous systems, which can be extended to general coupled dynamic systems.
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Affiliation(s)
- Shuihan Qiu
- grid.20513.350000 0004 1789 9964International Academic Center of Complex Systems, Beijing Normal University, Zhuhai, 519087 China ,grid.20513.350000 0004 1789 9964School of Systems Science, Beijing Normal University, Beijing, 100875 China
| | - Kaijia Sun
- grid.20513.350000 0004 1789 9964School of Systems Science, Beijing Normal University, Beijing, 100875 China
| | - Zengru Di
- grid.20513.350000 0004 1789 9964International Academic Center of Complex Systems, Beijing Normal University, Zhuhai, 519087 China ,grid.20513.350000 0004 1789 9964School of Systems Science, Beijing Normal University, Beijing, 100875 China
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Boaretto BRR, Budzinski RC, Prado TL, Kurths J, Lopes SR. Neuron dynamics variability and anomalous phase synchronization of neural networks. CHAOS (WOODBURY, N.Y.) 2018; 28:106304. [PMID: 30384616 DOI: 10.1063/1.5023878] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Accepted: 07/05/2018] [Indexed: 06/08/2023]
Abstract
Anomalous phase synchronization describes a synchronization phenomenon occurring even for the weakly coupled network and characterized by a non-monotonous dependence of the synchronization strength on the coupling strength. Its existence may support a theoretical framework to some neurological diseases, such as Parkinson's and some episodes of seizure behavior generated by epilepsy. Despite the success of controlling or suppressing the anomalous phase synchronization in neural networks applying external perturbations or inducing ambient changes, the origin of the anomalous phase synchronization as well as the mechanisms behind the suppression is not completely known. Here, we consider networks composed of N = 2000 coupled neurons in a small-world topology for two well known neuron models, namely, the Hodgkin-Huxley-like and the Hindmarsh-Rose models, both displaying the anomalous phase synchronization regime. We show that the anomalous phase synchronization may be related to the individual behavior of the coupled neurons; particularly, we identify a strong correlation between the behavior of the inter-bursting-intervals of the neurons, what we call neuron variability, to the ability of the network to depict anomalous phase synchronization. We corroborate the ideas showing that external perturbations or ambient parameter changes that eliminate anomalous phase synchronization and at the same time promote small changes in the individual dynamics of the neurons, such that an increasing individual variability of neurons implies a decrease of anomalous phase synchronization. Finally, we demonstrate that this effect can be quantified using a well known recurrence quantifier, the "determinism." Moreover, the results obtained by the determinism are based on only the mean field potential of the network, turning these measures more suitable to be used in experimental situations.
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Affiliation(s)
- B R R Boaretto
- Departamento de Física, Universidade Federal do Paraná, 81531-980 Curitiba, Brazil
| | - R C Budzinski
- Departamento de Física, Universidade Federal do Paraná, 81531-980 Curitiba, Brazil
| | - T L Prado
- Instituto de Engenharia, Ciência e Tecnologia, Universidade Federal dos Vales do Jequitinhonha e Mucuri, 39440-000 Janaúba, Brazil
| | - Jürgen Kurths
- Potsdam Institute for Climate Impact Research - Telegraphenberg A 31, 14473 Potsdam, Germany
| | - S R Lopes
- Departamento de Física, Universidade Federal do Paraná, 81531-980 Curitiba, Brazil
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Budzinski RC, Boaretto BRR, Prado TL, Lopes SR. Detection of nonstationary transition to synchronized states of a neural network using recurrence analyses. Phys Rev E 2017; 96:012320. [PMID: 29347270 DOI: 10.1103/physreve.96.012320] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2017] [Indexed: 06/07/2023]
Abstract
We study the stability of asymptotic states displayed by a complex neural network. We focus on the loss of stability of a stationary state of networks using recurrence quantifiers as tools to diagnose local and global stabilities as well as the multistability of a coupled neural network. Numerical simulations of a neural network composed of 1024 neurons in a small-world connection scheme are performed using the model of Braun et al. [Int. J. Bifurcation Chaos 08, 881 (1998)IJBEE40218-127410.1142/S0218127498000681], which is a modified model from the Hodgkin-Huxley model [J. Phys. 117, 500 (1952)]. To validate the analyses, the results are compared with those produced by Kuramoto's order parameter [Chemical Oscillations, Waves, and Turbulence (Springer-Verlag, Berlin Heidelberg, 1984)]. We show that recurrence tools making use of just integrated signals provided by the networks, such as local field potential (LFP) (LFP signals) or mean field values bring new results on the understanding of neural behavior occurring before the synchronization states. In particular we show the occurrence of different stationary and nonstationarity asymptotic states.
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Affiliation(s)
- R C Budzinski
- Departamento de Física, Universidade Federal do Paraná, 81531-980 Curitiba, Paraná, Brazil
| | - B R R Boaretto
- Departamento de Física, Universidade Federal do Paraná, 81531-980 Curitiba, Paraná, Brazil
| | - T L Prado
- Instituto de Engenharia, Ciência e Tecnologia, Universidade Federal dos Vales do Jequitinhonha e Mucuri, 39100-000 Janaúba, Minas Gerais, Brazil
| | - S R Lopes
- Departamento de Física, Universidade Federal do Paraná, 81531-980 Curitiba, Paraná, Brazil
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Kim SY, Lim W. Dynamical responses to external stimuli for both cases of excitatory and inhibitory synchronization in a complex neuronal network. Cogn Neurodyn 2017; 11:395-413. [PMID: 29067129 DOI: 10.1007/s11571-017-9441-5] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Revised: 05/08/2017] [Accepted: 05/17/2017] [Indexed: 12/12/2022] Open
Abstract
For studying how dynamical responses to external stimuli depend on the synaptic-coupling type, we consider two types of excitatory and inhibitory synchronization (i.e., synchronization via synaptic excitation and inhibition) in complex small-world networks of excitatory regular spiking (RS) pyramidal neurons and inhibitory fast spiking (FS) interneurons. For both cases of excitatory and inhibitory synchronization, effects of synaptic couplings on dynamical responses to external time-periodic stimuli S(t) (applied to a fraction of neurons) are investigated by varying the driving amplitude A of S(t). Stimulated neurons are phase-locked to external stimuli for both cases of excitatory and inhibitory couplings. On the other hand, the stimulation effect on non-stimulated neurons depends on the type of synaptic coupling. The external stimulus S(t) makes a constructive effect on excitatory non-stimulated RS neurons (i.e., it causes external phase lockings in the non-stimulated sub-population), while S(t) makes a destructive effect on inhibitory non-stimulated FS interneurons (i.e., it breaks up original inhibitory synchronization in the non-stimulated sub-population). As results of these different effects of S(t), the type and degree of dynamical response (e.g., synchronization enhancement or suppression), characterized by the dynamical response factor [Formula: see text] (given by the ratio of synchronization degree in the presence and absence of stimulus), are found to vary in a distinctly different way, depending on the synaptic-coupling type. Furthermore, we also measure the matching degree between the dynamics of the two sub-populations of stimulated and non-stimulated neurons in terms of a "cross-correlation" measure [Formula: see text]. With increasing A, based on [Formula: see text], we discuss the cross-correlations between the two sub-populations, affecting the dynamical responses to S(t).
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Affiliation(s)
- Sang-Yoon Kim
- Institute for Computational Neuroscience and Department of Science Education, Daegu National University of Education, Daegu, 42411 Korea
| | - Woochang Lim
- Institute for Computational Neuroscience and Department of Science Education, Daegu National University of Education, Daegu, 42411 Korea
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Mina P, Tsaneva-Atanasova K, Bernardo MD. Entrainment and Control of Bacterial Populations: An in Silico Study over a Spatially Extended Agent Based Model. ACS Synth Biol 2016; 5:639-53. [PMID: 27110835 DOI: 10.1021/acssynbio.5b00243] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
We extend a spatially explicit agent based model (ABM) developed previously to investigate entrainment and control of the emergent behavior of a population of synchronized oscillating cells in a microfluidic chamber. Unlike most of the work in models of control of cellular systems which focus on temporal changes, we model individual cells with spatial dependencies which may contribute to certain behavioral responses. We use the model to investigate the response of both open loop and closed loop strategies, such as proportional control (P-control), proportional-integral control (PI-control) and proportional-integral-derivative control (PID-control), to heterogeinities and growth in the cell population, variations of the control parameters and spatial effects such as diffusion in the spatially explicit setting of a microfluidic chamber setup. We show that, as expected from the theory of phase locking in dynamical systems, open loop control can only entrain the cell population in a subset of forcing periods, with a wide variety of dynamical behaviors obtained outside these regions of entrainment. Closed-loop control is shown instead to guarantee entrainment in a much wider region of control parameter space although presenting limitations when the population size increases over a certain threshold. In silico tracking experiments are also performed to validate the ability of classical control approaches to achieve other reference behaviors such as a desired constant output or a linearly varying one. All simulations are carried out in BSim, an advanced agent-based simulator of microbial population which is here extended ad hoc to include the effects of control strategies acting onto the population.
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Affiliation(s)
| | | | - Mario di Bernardo
- Department
of Information and Computer Engineering, University of Naples Federico II, Naples, Italy
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Rhythmic Oscillations of Excitatory Bursting Hodkin-Huxley Neuronal Network with Synaptic Learning. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2016; 2016:6023547. [PMID: 27073393 PMCID: PMC4814680 DOI: 10.1155/2016/6023547] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/27/2015] [Accepted: 02/24/2016] [Indexed: 11/17/2022]
Abstract
Rhythmic oscillations of neuronal network are actually kind of synchronous behaviors, which play an important role in neural systems. In this paper, the properties of excitement degree and oscillation frequency of excitatory bursting Hodkin-Huxley neuronal network which incorporates a synaptic learning rule are studied. The effects of coupling strength, synaptic learning rate, and other parameters of chemical synapses, such as synaptic delay and decay time constant, are explored, respectively. It is found that the increase of the coupling strength can weaken the extent of excitement, whereas increasing the synaptic learning rate makes the network more excited in a certain range; along with the increasing of the delay time and the decay time constant, the excitement degree increases at the beginning, then decreases, and keeps stable. It is also found that, along with the increase of the synaptic learning rate, the coupling strength, the delay time, and the decay time constant, the oscillation frequency of the network decreases monotonically.
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Lameu EL, Borges FS, Borges RR, Iarosz KC, Caldas IL, Batista AM, Viana RL, Kurths J. Suppression of phase synchronisation in network based on cat's brain. CHAOS (WOODBURY, N.Y.) 2016; 26:043107. [PMID: 27131486 DOI: 10.1063/1.4945796] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
We have studied the effects of perturbations on the cat's cerebral cortex. According to the literature, this cortex structure can be described by a clustered network. This way, we construct a clustered network with the same number of areas as in the cat matrix, where each area is described as a sub-network with a small-world property. We focus on the suppression of neuronal phase synchronisation considering different kinds of perturbations. Among the various controlling interventions, we choose three methods: delayed feedback control, external time-periodic driving, and activation of selected neurons. We simulate these interventions to provide a procedure to suppress undesired and pathological abnormal rhythms that can be associated with many forms of synchronisation. In our simulations, we have verified that the efficiency of synchronisation suppression by delayed feedback control is higher than external time-periodic driving and activation of selected neurons of the cat's cerebral cortex with the same coupling strengths.
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Affiliation(s)
- Ewandson L Lameu
- Pós-Graduação em Ciências, Universidade Estadual de Ponta Grossa, Ponta Grossa, Paraná, Brazil
| | - Fernando S Borges
- Pós-Graduação em Ciências, Universidade Estadual de Ponta Grossa, Ponta Grossa, Paraná, Brazil
| | - Rafael R Borges
- Pós-Graduação em Ciências, Universidade Estadual de Ponta Grossa, Ponta Grossa, Paraná, Brazil
| | - Kelly C Iarosz
- Instituto de Física, Universidade de São Paulo, São Paulo, São Paulo, Brazil
| | - Iberê L Caldas
- Instituto de Física, Universidade de São Paulo, São Paulo, São Paulo, Brazil
| | - Antonio M Batista
- Departamento de Matemática e Estatística, Universidade Estadual de Ponta Grossa, Ponta Grossa, Paraná, Brazil
| | - Ricardo L Viana
- Departamento de Física, Universidade Federal do Paraná, Curitiba, Paraná, Brazil
| | - Jürgen Kurths
- Department of Physics, Humboldt University, Berlin, Germany; Institute for Complex Systems and Mathematical Biology, Aberdeen, Scotland; and Potsdam Institute for Climate Impact Research, Potsdam, Germany
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8
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Abstract
We study the existence of chimera states in pulse-coupled networks of bursting Hindmarsh-Rose neurons with nonlocal, global, and local (nearest neighbor) couplings. Through a linear stability analysis, we discuss the behavior of the stability function in the incoherent (i.e., disorder), coherent, chimera, and multichimera states. Surprisingly, we find that chimera and multichimera states occur even using local nearest neighbor interaction in a network of identical bursting neurons alone. This is in contrast with the existence of chimera states in populations of nonlocally or globally coupled oscillators. A chemical synaptic coupling function is used which plays a key role in the emergence of chimera states in bursting neurons. The existence of chimera, multichimera, coherent, and disordered states is confirmed by means of the recently introduced statistical measures and mean phase velocity.
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Affiliation(s)
- Bidesh K Bera
- Physics and Applied Mathematics Unit, Indian Statistical Institute, Kolkata-700108, India
| | - Dibakar Ghosh
- Physics and Applied Mathematics Unit, Indian Statistical Institute, Kolkata-700108, India
| | - M Lakshmanan
- Centre for Nonlinear Dynamics, School of Physics, Bharathidasan University, Tiruchirapalli-620024, India
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Rosa E, Skilling QM, Stein W. Effects of reciprocal inhibitory coupling in model neurons. Biosystems 2014; 127:73-83. [PMID: 25448894 DOI: 10.1016/j.biosystems.2014.11.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2014] [Revised: 10/23/2014] [Accepted: 11/02/2014] [Indexed: 01/05/2023]
Abstract
Central pattern generators are neuron networks that produce vital rhythmic motor outputs such as those observed in mastication, walking and breathing. Their activity patterns depend on the tuning of their intrinsic ionic conductances, their synaptic interconnectivity and entrainment by extrinsic neurons. The influence of two commonly found synaptic connectivities--reciprocal inhibition and electrical coupling--are investigated here using a neuron model with subthreshold oscillation capability, in different firing and entrainment regimes. We study the dynamics displayed by a network of a pair of neurons with various firing regimes, coupled by either (i) only reciprocal inhibition or by (ii) electrical coupling first and then reciprocal inhibition. In both scenarios a range of coupling strengths for the reciprocal inhibition is tested, and in general the neuron with the lower firing rate stops spiking for strong enough inhibitory coupling, while the faster neuron remains active. However, in scenario (ii) the originally slower neuron stops spiking at weaker inhibitory coupling strength, suggesting that the electrical coupling introduces an element of instability to the two-neuron network.
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Affiliation(s)
- Epaminondas Rosa
- Department of Physics, Illinois State University, Normal, IL 61790, USA.
| | | | - Wolfgang Stein
- School of Biological Sciences, Illinois State University, Normal, IL 61790, USA
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Prado TDL, Lopes SR, Batista CAS, Kurths J, Viana RL. Synchronization of bursting Hodgkin-Huxley-type neurons in clustered networks. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:032818. [PMID: 25314492 DOI: 10.1103/physreve.90.032818] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/25/2014] [Indexed: 06/04/2023]
Abstract
We considered a clustered network of bursting neurons described by the Huber-Braun model. In the upper level of the network we used the connectivity matrix of the cat cerebral cortex network, and in the lower level each cortex area (or cluster) is modelled as a small-world network. There are two different coupling strengths related to inter- and intracluster dynamics. Each bursting cycle is composed of a quiescent period followed by a rapid chaotic sequence of spikes, and we defined a geometric phase which enables us to investigate the onset of synchronized bursting, as the state in which the neuron start bursting at the same time, whereas their spikes may remain uncorrelated. The bursting synchronization of a clustered network has been investigated using an order parameter and the average field of the network in order to identify regimes in which each cluster may display synchronized behavior, whereas the overall network does not. We introduce quantifiers to evaluate the relative contribution of each cluster in the partial synchronized behavior of the whole network. Our main finding is that we typically observe in the clustered network not a complete phase synchronized regime but instead a complex pattern of partial phase synchronization in which different cortical areas may be internally synchronized at distinct phase values, hence they are not externally synchronized, unless the coupling strengths are too large.
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Affiliation(s)
- T de L Prado
- Departament of Physics, Federal University of Parana, Caixa Postal 19044, 81531-990, Curitiba, Paraná, Brazil and Institute of Physics, Humboldt University, D-10099 Berlin, Germany and Potsdam Institute for Climate Impact Research, P. O. Box 601203, 14412 Potsdam, Germany
| | - S R Lopes
- Departament of Physics, Federal University of Parana, Caixa Postal 19044, 81531-990, Curitiba, Paraná, Brazil
| | - C A S Batista
- Departament of Physics, Federal University of Parana, Caixa Postal 19044, 81531-990, Curitiba, Paraná, Brazil
| | - J Kurths
- Institute of Physics, Humboldt University, D-10099 Berlin, Germany and Institute for Complex Systems and Mathematical Biology, Aberdeen, AB243UE, United Kingdom and Potsdam Institute for Climate Impact Research, P. O. Box 601203, 14412 Potsdam, Germany
| | - R L Viana
- Departament of Physics, Federal University of Parana, Caixa Postal 19044, 81531-990, Curitiba, Paraná, Brazil
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