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Ohga N, Ito S. Information-geometric structure for chemical thermodynamics: An explicit construction of dual affine coordinates. Phys Rev E 2022; 106:044131. [PMID: 36397558 DOI: 10.1103/physreve.106.044131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Accepted: 09/08/2022] [Indexed: 06/16/2023]
Abstract
We construct an information-geometric structure for chemical thermodynamics, applicable to a wide range of chemical reaction systems including nonideal and open systems. For this purpose, we explicitly construct dual affine coordinate systems, which completely designate an information-geometric structure, using the extent of reactions and the affinities of reactions as coordinates on a linearly constrained space of amounts of substances. The resulting structure induces a metric and a divergence (a function of two distributions of amounts), both expressed with chemical potentials. These quantities have been partially known for ideal-dilute solutions, but their extensions for nonideal solutions and the complete underlying structure are novel. The constructed geometry is a generalization of dual affine coordinates for stochastic thermodynamics. For example, the metric and the divergence are generalizations of the Fisher information and the Kullback-Leibler divergence. As an application, we identify the chemical-thermodynamic analog of the Hatano-Sasa excess entropy production using our divergence.
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Affiliation(s)
- Naruo Ohga
- Department of Physics, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Sosuke Ito
- Department of Physics, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
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Gupta D, Busiello DM. Tighter thermodynamic bound on the speed limit in systems with unidirectional transitions. Phys Rev E 2021; 102:062121. [PMID: 33465998 DOI: 10.1103/physreve.102.062121] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2020] [Accepted: 11/19/2020] [Indexed: 11/07/2022]
Abstract
We consider a general discrete state-space system with both unidirectional and bidirectional links. In contrast to bidirectional links, there is no reverse transition along the unidirectional links. Herein, we first compute the statistical length and the thermodynamic cost function for transitions in the probability space, highlighting contributions from total, environmental, and resetting (unidirectional) entropy production. Then we derive the thermodynamic bound on the speed limit to connect two distributions separated by a finite time, showing the effect of the presence of unidirectional transitions. Uncertainty relationships can be found for the temporal first and second moments of the average resetting entropy production. We derive simple expressions in the limit of slow unidirectional transition rates. Finally, we present a refinement of the thermodynamic bound by means of an optimization procedure. We numerically investigate these results on systems that stochastically reset with constant and periodic resetting rate.
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Affiliation(s)
- Deepak Gupta
- Dipartimento di Fisica "G. Galilei," INFN, Università di Padova, Via Marzolo 8, 35131 Padova, Italy
| | - Daniel M Busiello
- Ecole Polytechnique Fédérale de Lausanne (EPFL), Institute of Physics Laboratory of Statistical Biophysics, 1015 Lausanne, Switzerland
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Lapolla A, Godec A. Faster Uphill Relaxation in Thermodynamically Equidistant Temperature Quenches. PHYSICAL REVIEW LETTERS 2020; 125:110602. [PMID: 32975999 DOI: 10.1103/physrevlett.125.110602] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2020] [Revised: 06/13/2020] [Accepted: 08/10/2020] [Indexed: 05/29/2023]
Abstract
We uncover an unforeseen asymmetry in relaxation: for a pair of thermodynamically equidistant temperature quenches, one from a lower and the other from a higher temperature, the relaxation at the ambient temperature is faster in the case of the former. We demonstrate this finding on hand of two exactly solvable many-body systems relevant in the context of single-molecule and tracer-particle dynamics. We prove that near stable minima and for all quadratic energy landscapes it is a general phenomenon that also exists in a class of non-Markovian observables probed in single-molecule and particle-tracking experiments. The asymmetry is a general feature of reversible overdamped diffusive systems with smooth single-well potentials and occurs in multiwell landscapes when quenches disturb predominantly intrawell equilibria. Our findings may be relevant for the optimization of stochastic heat engines.
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Affiliation(s)
- Alessio Lapolla
- Mathematical bioPhysics group, Max Planck Institute for Biophysical Chemistry, Göttingen 37077, Germany
| | - Aljaž Godec
- Mathematical bioPhysics group, Max Planck Institute for Biophysical Chemistry, Göttingen 37077, Germany
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Kim EJ. Investigating Information Geometry in Classical and Quantum Systems through Information Length. ENTROPY 2018; 20:e20080574. [PMID: 33265663 PMCID: PMC7513100 DOI: 10.3390/e20080574] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2018] [Revised: 08/01/2018] [Accepted: 08/01/2018] [Indexed: 11/16/2022]
Abstract
Stochastic processes are ubiquitous in nature and laboratories, and play a major role across traditional disciplinary boundaries. These stochastic processes are described by different variables and are thus very system-specific. In order to elucidate underlying principles governing different phenomena, it is extremely valuable to utilise a mathematical tool that is not specific to a particular system. We provide such a tool based on information geometry by quantifying the similarity and disparity between Probability Density Functions (PDFs) by a metric such that the distance between two PDFs increases with the disparity between them. Specifically, we invoke the information length L(t) to quantify information change associated with a time-dependent PDF that depends on time. L(t) is uniquely defined as a function of time for a given initial condition. We demonstrate the utility of L(t) in understanding information change and attractor structure in classical and quantum systems.
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Affiliation(s)
- Eun-Jin Kim
- School of Mathematics and Statistics, University of Sheffield, Sheffield S3 7RH, UK
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Hollerbach R, Dimanche D, Kim EJ. Information Geometry of Nonlinear Stochastic Systems. ENTROPY 2018; 20:e20080550. [PMID: 33265639 PMCID: PMC7513076 DOI: 10.3390/e20080550] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2018] [Revised: 07/20/2018] [Accepted: 07/23/2018] [Indexed: 11/16/2022]
Abstract
We elucidate the effect of different deterministic nonlinear forces on geometric structure of stochastic processes by investigating the transient relaxation of initial PDFs of a stochastic variable x under forces proportional to -xn (n=3,5,7) and different strength D of δ-correlated stochastic noise. We identify the three main stages consisting of nondiffusive evolution, quasi-linear Gaussian evolution and settling into stationary PDFs. The strength of stochastic noise is shown to play a crucial role in determining these timescales as well as the peak amplitude and width of PDFs. From time-evolution of PDFs, we compute the rate of information change for a given initial PDF and uniquely determine the information length L(t) as a function of time that represents the number of different statistical states that a system evolves through in time. We identify a robust geodesic (where the information changes at a constant rate) in the initial stage, and map out geometric structure of an attractor as L(t→∞)∝μm, where μ is the position of an initial Gaussian PDF. The scaling exponent m increases with n, and also varies with D (although to a lesser extent). Our results highlight ubiquitous power-laws and multi-scalings of information geometry due to nonlinear interaction.
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Affiliation(s)
- Rainer Hollerbach
- Department of Applied Mathematics, University of Leeds, Leeds LS2 9JT, UK
- Correspondence: ; Tel.: +44-113-343-5134
| | - Donovan Dimanche
- School of Mathematics and Statistics, University of Sheffield, Sheffield S3 7RH, UK
- Institut National des Sciences Appliquées de Rouen, 76801 Saint-Étienne-du-Rouvray CEDEX, France
| | - Eun-jin Kim
- School of Mathematics and Statistics, University of Sheffield, Sheffield S3 7RH, UK
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Ito S. Stochastic Thermodynamic Interpretation of Information Geometry. PHYSICAL REVIEW LETTERS 2018; 121:030605. [PMID: 30085772 DOI: 10.1103/physrevlett.121.030605] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2018] [Indexed: 06/08/2023]
Abstract
In recent years, the unified theory of information and thermodynamics has been intensively discussed in the context of stochastic thermodynamics. The unified theory reveals that information theory would be useful to understand nonstationary dynamics of systems far from equilibrium. In this Letter, we have found a new link between stochastic thermodynamics and information theory well-known as information geometry. By applying this link, an information geometric inequality can be interpreted as a thermodynamic uncertainty relationship between speed and thermodynamic cost. We have numerically applied an information geometric inequality to a thermodynamic model of a biochemical enzyme reaction.
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Affiliation(s)
- Sosuke Ito
- RIES, Hokkaido University, N20 W10, Kita-ku, Sapporo, Hokkaido 001-0020, Japan
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Information-Theoretic Bound on the Entropy Production to Maintain a Classical Nonequilibrium Distribution Using Ancillary Control. ENTROPY 2017. [DOI: 10.3390/e19070333] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
Abstract
There are many functional contexts where it is desirable to maintain a mesoscopic system in a nonequilibrium state. However, such control requires an inherent energy dissipation. In this article, we unify and extend a number of works on the minimum energetic cost to maintain a mesoscopic system in a prescribed nonequilibrium distribution using ancillary control. For a variety of control mechanisms, we find that the minimum amount of energy dissipation necessary can be cast as an information-theoretic measure of distinguishability between the target nonequilibrium state and the underlying equilibrium distribution. This work offers quantitative insight into the intuitive idea that more energy is needed to maintain a system farther from equilibrium.
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Kim EJ, Lee U, Heseltine J, Hollerbach R. Geometric structure and geodesic in a solvable model of nonequilibrium process. Phys Rev E 2016; 93:062127. [PMID: 27415228 DOI: 10.1103/physreve.93.062127] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2015] [Indexed: 11/07/2022]
Abstract
We investigate the geometric structure of a nonequilibrium process and its geodesic solutions. By employing an exactly solvable model of a driven dissipative system (generalized nonautonomous Ornstein-Uhlenbeck process), we compute the time-dependent probability density functions (PDFs) and investigate the evolution of this system in a statistical metric space where the distance between two points (the so-called information length) quantifies the change in information along a trajectory of the PDFs. In this metric space, we find a geodesic for which the information propagates at constant speed, and demonstrate its utility as an optimal path to reduce the total time and total dissipated energy. In particular, through examples of physical realizations of such geodesic solutions satisfying boundary conditions, we present a resonance phenomenon in the geodesic solution and the discretization into cyclic geodesic solutions. Implications for controlling population growth are further discussed in a stochastic logistic model, where a periodic modulation of the diffusion coefficient and the deterministic force by a small amount is shown to have a significant controlling effect.
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Affiliation(s)
- Eun-Jin Kim
- School of Mathematics and Statistics, University of Sheffield, Sheffield, S3 7RH, United Kingdom
| | - UnJin Lee
- Department of Ecology and Evolution, University of Chicago, Chicago, Illinois 60637, USA
| | - James Heseltine
- School of Mathematics and Statistics, University of Sheffield, Sheffield, S3 7RH, United Kingdom
| | - Rainer Hollerbach
- Department of Applied Mathematics, University of Leeds, Leeds LS2 9JT, United Kingdom
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Structures in Sound: Analysis of Classical Music Using the Information Length. ENTROPY 2016. [DOI: 10.3390/e18070258] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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The Fisher Thermodynamics of Quasi-Probabilities. ENTROPY 2015. [DOI: 10.3390/e17127853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Falaye BJ, Oyewumi KJ, Sadikoglu F, Hamzavi M, Ikhdair SM. Analysis of quantum-mechanical states of the ring-shaped Mie-type diatomic molecular model via the Fisher's information. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2015. [DOI: 10.1142/s0219633615500364] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Recently, the information theory of quantum-mechanical systems has aroused the interest of many theoretical physicists. This is due to the fact that it provides a deeper insight into the internal structure of the system. Also, it is the strongest support of the modern quantum computation and information, which is a basic theory for numerous technological developments. This study reports the solution of Schrödinger equation with the ring-shaped Mie-type potential. The rotational-vibrational spectroscopic study of some few selected diatomic molecules are given. The probability distribution density of the system which gives the probability density for observing the electron in the state characterized by the quantum numbers (n, l, m) in the ring-shaped Mie-type potential is obtained. Finally, the analysis for this distribution via a complementary information measures of a probability distribution known as the Fisher's information have been presented.
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Affiliation(s)
- B. J. Falaye
- Applied Theoretical Physics Division, Department of Physics, Federal University Lafia, P. M. B. 146, Lafia, Nigeria
| | - K. J. Oyewumi
- Theoretical Physics Section, Department of Physics, University of Ilorin, P. M. B. 1515, Ilorin, Nigeria
| | - F. Sadikoglu
- Department of Electrical Engineering, Near East University, Nicosia, Northern Cyprus, Mersin 10, Turkey
| | - M. Hamzavi
- Department of Physics, University of Zanjan, Zanjan, Iran
| | - S. M. Ikhdair
- Department of Physics, Faculty of Science, an-Najah National University, New campus, P. O. Box 7, Nablus West Bank, Palestine
- Department of Electrical Engineering, Near East University, Nicosia, Northern Cyprus, Mersin 10, Turkey
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