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Schelling MPM, Meijer JM. Controlled creation of point defects in three-dimensional colloidal crystals. Phys Rev E 2024; 109:L062601. [PMID: 39020982 DOI: 10.1103/physreve.109.l062601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Accepted: 05/06/2024] [Indexed: 07/20/2024]
Abstract
Crystal defects crucially influence the properties of crystalline materials and have been extensively studied. Even for the simplest type of defect-the point defect-however, basic properties such as their diffusive behavior, and their interactions, remain elusive on the atomic scale. Here, we demonstrate in situ control over the creation of isolated point defects in a three-dimensional (3D) colloidal crystal allowing insight on a single-particle level. Our system consists of thermoresponsive microgel particles embedded in a crystal of nonresponsive colloids. Heating this mixed-particle system triggers the shrinking of the embedded microgels, which then vacate their lattice positions, creating vacancy-interstitial pairs. We use temperature-controlled confocal laser scanning microscopy to verify and visualize the formation of the point defects. In addition, by reswelling the microgels we quantify the local lattice distortion around an interstitial defect. Our experimental model system provides a unique opportunity to shed light on the interplay between point defects, on the mechanisms of their diffusion, on their interactions, and on collective dynamics.
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2
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McDermott D, Reichhardt C, Reichhardt CJO. Characterizing different motility-induced regimes in active matter with machine learning and noise. Phys Rev E 2023; 108:064613. [PMID: 38243443 DOI: 10.1103/physreve.108.064613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Accepted: 11/29/2023] [Indexed: 01/21/2024]
Abstract
We examine motility-induced phase separation (MIPS) in two-dimensional run-and-tumble disk systems using both machine learning and noise fluctuation analysis. Our measures suggest that within the MIPS state there are several distinct regimes as a function of density and run time, so that systems with MIPS transitions exhibit an active fluid, an active crystal, and a critical regime. The different regimes can be detected by combining an order parameter extracted from principal component analysis with a cluster stability measurement. The principal component-derived order parameter is maximized in the critical regime, remains low in the active fluid, and has an intermediate value in the active crystal regime. We demonstrate that machine learning can better capture dynamical properties of the MIPS regimes compared to more standard structural measures such as the maximum cluster size. The different regimes can also be characterized via changes in the noise power of the fluctuations in the average speed. In the critical regime, the noise power passes through a maximum and has a broad spectrum with a 1/f^{1.6} signature, similar to the noise observed near depinning transitions or for solids undergoing plastic deformation.
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Affiliation(s)
- D McDermott
- X-Theoretical Design Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - C Reichhardt
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - C J O Reichhardt
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
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Liu P, Ning L, Zong Y, Ye F, Yang M, Chen K. Lattice Induced Short-Range Attraction between Like-Charged Colloidal Particles. PHYSICAL REVIEW LETTERS 2022; 129:018002. [PMID: 35841542 DOI: 10.1103/physrevlett.129.018002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Revised: 04/13/2022] [Accepted: 06/02/2022] [Indexed: 06/15/2023]
Abstract
We perform experiments and computer simulations to study the effective interactions between like-charged colloidal tracers moving in a two-dimensional fluctuating background of colloidal crystal. By a counting method that properly accounts for the configurational degeneracy of tracer pairs, we extract the relative probability of finding a tracer pair in neighboring triangular cells formed by background particles. We find that this probability at the nearest neighbor cell is remarkably greater than those at cells with larger separations, implying an effective attraction between the tracers. This effective attraction weakens sharply as the background lattice constant increases. Furthermore, we clarify that the lattice-mediated effective attraction originates from the minimization of free energy increase from deformation of the crystalline background due to the presence of diffusing tracers.
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Affiliation(s)
- Peng Liu
- Beijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
- Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325001, China
| | - Luhui Ning
- Beijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
- Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325001, China
| | - Yiwu Zong
- Frontiers Science Center for Synthetic Biology and Key Laboratory of Systems Bioengineering (Ministry of Education), School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China
| | - Fangfu Ye
- Beijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
- Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325001, China
- Songshan Lake Materials Laboratory, Dongguan, Guangdong 523808, China
| | - Mingcheng Yang
- Beijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
- Songshan Lake Materials Laboratory, Dongguan, Guangdong 523808, China
| | - Ke Chen
- Beijing National Laboratory for Condensed Matter Physics and Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China
- School of Physical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China
- Songshan Lake Materials Laboratory, Dongguan, Guangdong 523808, China
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Chen Y, Tan X, Wang H, Zhang Z, Kosterlitz JM, Ling XS. 2D Colloidal Crystals with Anisotropic Impurities. PHYSICAL REVIEW LETTERS 2021; 127:018004. [PMID: 34270301 DOI: 10.1103/physrevlett.127.018004] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Revised: 04/13/2021] [Accepted: 06/04/2021] [Indexed: 06/13/2023]
Abstract
We report a study of 2D colloidal crystals with anisotropic ellipsoid impurities using video microscopy. It is found that at low impurity densities, the impurity particles behave like floating disorder with which the quasi-long-range orientational order survives and the elasticity of the system is actually enhanced. There is a critical impurity density above which the 2D crystal loses the quasi-long-range orientational order. At high impurity densities, the 2D crystal breaks into polycrystalline domains separated by grain boundaries where the impurity particles aggregate. This transition is accompanied by a decrease in the elastic moduli, and it is associated with strong heterogeneous dynamics in the system. The correlation length vs impurity density in the disordered phase exhibits an essential singularity at the critical impurity density.
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Affiliation(s)
- Ya Chen
- Institute for Advanced Study, Center for Soft Condensed Matter Physics and Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China
| | - Xinlan Tan
- Institute for Advanced Study, Center for Soft Condensed Matter Physics and Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China
| | - Huaguang Wang
- Institute for Advanced Study, Center for Soft Condensed Matter Physics and Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou 215123, China
| | - Zexin Zhang
- Institute for Advanced Study, Center for Soft Condensed Matter Physics and Interdisciplinary Research, School of Physical Science and Technology, Soochow University, Suzhou 215006, China
- College of Chemistry, Chemical Engineering and Materials Science, Soochow University, Suzhou 215123, China
| | - J M Kosterlitz
- Department of Physics, Brown University, Providence, Rhode Island 02912, USA
| | - Xinsheng Sean Ling
- Department of Physics, Brown University, Providence, Rhode Island 02912, USA
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van der Meer B, Dijkstra M, Filion L. Diffusion and interactions of point defects in hard-sphere crystals. J Chem Phys 2017; 146:244905. [DOI: 10.1063/1.4990416] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Berend van der Meer
- Soft Condensed Matter, Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 5, 3584 CC Utrecht, The Netherlands
| | - Marjolein Dijkstra
- Soft Condensed Matter, Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 5, 3584 CC Utrecht, The Netherlands
| | - Laura Filion
- Soft Condensed Matter, Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 5, 3584 CC Utrecht, The Netherlands
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van der Meer B, Filion L, Dijkstra M. Fabricating large two-dimensional single colloidal crystals by doping with active particles. SOFT MATTER 2016; 12:3406-3411. [PMID: 26936131 DOI: 10.1039/c6sm00031b] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Using simulations we explore the behaviour of two-dimensional colloidal (poly)crystals doped with active particles. We show that these active dopants can provide an elegant new route to removing grain boundaries in polycrystals. Specifically, we show that active dopants both generate and are attracted to defects, such as vacancies and interstitials, which leads to clustering of dopants at grain boundaries. The active particles both broaden and enhance the mobility of the grain boundaries, causing rapid coarsening of the crystal domains. The remaining defects recrystallize upon turning off the activity of the dopants, resulting in a large-scale single-domain crystal.
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Affiliation(s)
- B van der Meer
- Soft Condensed Matter, Debye Institute for Nanomaterials Science, Utrecht University, Princetonplein 5, 3584 CC Utrecht, The Netherlands.
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Mohorič T, Dobnikar J, Horbach J. Two-dimensional magnetic colloids under shear. SOFT MATTER 2016; 12:3142-3148. [PMID: 26877059 DOI: 10.1039/c6sm00023a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Complex rheological properties of soft disordered solids, such as colloidal gels or glasses, inspire a range of novel applications. However, the microscopic mechanisms of their response to mechanical loading are not well understood. Here, we elucidate some aspects of these mechanisms by studying a versatile model system, i.e. two-dimensional superparamagnetic colloids in a precessing magnetic field, whose structure can be tuned from a hexagonal crystal to a disordered gel network by varying the external field opening angle θ. We perform Langevin dynamics simulations subjecting these structures to a constant shear rate and observe three qualitatively different types of material response. In hexagonal crystals (θ = 0°), at a sufficiently low shear rate, plastic flow occurs via successive stress drops at which the stress releases due to the formation of dislocation defects. The gel network at θ = 48°, on the contrary, via bond rearrangement and transient shear banding evolves into a homogeneously stretched network at large strains. The latter structure remains metastable after switching off of the shear. At θ = 50°, the external shear makes the system unstable against phase separation and causes a failure of the network structure leading to the formation of hexagonal close packed clusters interconnected by particle chains. At a microcopic level, our simulations provide insight into some of the mechanisms by which strain localization as well as material failure occur in a simple gel-like network. Furthermore, we demonstrate that new stretched network structures can be generated by the application of shear.
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Affiliation(s)
- Tomaž Mohorič
- International Research Centre for Soft Matter, Beijing University of Chemical Technology, Beijing 100029, P. R. China.
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Lechner W, Polster D, Maret G, Dellago C, Keim P. Entropy and kinetics of point defects in two-dimensional dipolar crystals. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:032304. [PMID: 25871107 DOI: 10.1103/physreve.91.032304] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2014] [Indexed: 06/04/2023]
Abstract
We study in experiment and with computer simulation the free energy and the kinetics of vacancy and interstitial defects in two-dimensional dipolar crystals. The defects appear in different local topologies, which we characterize by their point group symmetry; Cn is the n-fold cyclic group and Dn is the dihedral group, including reflections. The frequency of different local topologies is not determined by their almost degenerate energies but is dominated by entropy for symmetric configurations. The kinetics of the defects is fully reproduced by a master equation in a multistate Markov model. In this model, the system is described by the state of the defect and the time evolution is given by transitions occurring with particular rates. These transition rate constants are extracted from experiments and simulations using an optimization procedure. The good agreement between experiment, simulation, and master equation thus provides evidence for the accuracy of the model.
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Affiliation(s)
- Wolfgang Lechner
- Institute for Quantum Optics and Quantum Information, Austrian Academy of Sciences, 6020 Innsbruck, Austria
- Institute for Theoretical Physics, University of Innsbruck, 6020 Innsbruck, Austria
| | - David Polster
- Department of Physics, University of Konstanz, D-78457 Konstanz, Germany
| | - Georg Maret
- Department of Physics, University of Konstanz, D-78457 Konstanz, Germany
| | - Christoph Dellago
- Faculty of Physics, University of Vienna, Boltzmanngasse 5, 1090 Vienna, Austria
| | - Peter Keim
- Department of Physics, University of Konstanz, D-78457 Konstanz, Germany
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Lechner W, Büchler HP, Zoller P. Role of quantum fluctuations in the hexatic phase of cold polar molecules. PHYSICAL REVIEW LETTERS 2014; 112:255301. [PMID: 25014821 DOI: 10.1103/physrevlett.112.255301] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2014] [Indexed: 06/03/2023]
Abstract
Two-dimensional crystals melt via an intermediate hexatic phase, which is characterized by an anomalous scaling of spatial and orientational correlation functions and the absence of an attraction between dislocations. We propose a protocol to study the effect of quantum fluctuations on the nature of this phase with a model system of strongly correlated ultracold polar molecules. Dislocations can be located in experiment from local energy differences which induce internal stark shifts in the molecules. We present a criterion to identify the hexatic phase from the statistics of the end points of topological defect strings and find a hexatic phase, which is dominated by quantum fluctuations, between the crystal and superfluid phases.
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Affiliation(s)
- Wolfgang Lechner
- Institute for Quantum Optics and Quantum Information, Austrian Academy of Sciences, 6020 Innsbruck, Austria and Institute for Theoretical Physics, University of Innsbruck, 6020 Innsbruck, Austria
| | - Hans-Peter Büchler
- Institute for Theoretical Physics III, University of Stuttgart, D-70550 Stuttgart, Germany
| | - Peter Zoller
- Institute for Quantum Optics and Quantum Information, Austrian Academy of Sciences, 6020 Innsbruck, Austria and Institute for Theoretical Physics, University of Innsbruck, 6020 Innsbruck, Austria
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Zhang H, Peng S, Mao L, Zhou X, Liang J, Wan C, Zheng J, Ju X. Freezing of Lennard-Jones fluid on a patterned substrate. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 89:062410. [PMID: 25019797 DOI: 10.1103/physreve.89.062410] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2014] [Indexed: 06/03/2023]
Abstract
Using molecular dynamics simulations, we study freezing of Lennard-Jones particles at commensurate substrate with triangular pattern. Throughout the box particles freeze onto the substrate and form close-packed layers. For the moderately attractive substrates, an intermediate hexatic phase between liquid and crystal is detected in the first two layers where the hexatic-solid freezing process is continuous while, counterintuitively, the liquid-hexatic process is of first order. Moreover, we observe that liquid-hexatic and hexatic-solid transitions shift towards higher temperatures with the attraction strength increasing. By contrast, the liquid-hexatic transition shifts faster than the hexatic-solid process, significantly widening the temperature range of the hexatic phase. When this phenomenon appears, freezing in the bulk always proceeds through a first-order transition at the same temperature. In addition, changes in the average structural order (three-dimensional) of the layers indicate that freezing processes in layers near substrates seem to cost the structural order of the bulk particles in their vicinity, and an intermediate prestructural cloud of medium-ordered particles is always observed before the layering freezing.
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Affiliation(s)
- Huijun Zhang
- School of Mathematics and Physics, University of Science and Technology Beijing, Beijing 100083, China and Institute of Nuclear Physics and Chemistry, China Academy of Engineering Physics, Mianyang 621900, China
| | - Shuming Peng
- Institute of Nuclear Physics and Chemistry, China Academy of Engineering Physics, Mianyang 621900, China
| | - Li Mao
- Institute of Nuclear Physics and Chemistry, China Academy of Engineering Physics, Mianyang 621900, China
| | - Xiaosong Zhou
- Institute of Nuclear Physics and Chemistry, China Academy of Engineering Physics, Mianyang 621900, China
| | - Jianhua Liang
- Institute of Nuclear Physics and Chemistry, China Academy of Engineering Physics, Mianyang 621900, China
| | - Chubin Wan
- School of Mathematics and Physics, University of Science and Technology Beijing, Beijing 100083, China
| | - Jian Zheng
- Institute of Nuclear Physics and Chemistry, China Academy of Engineering Physics, Mianyang 621900, China and School of Nuclear Science and Technology, University of Science and Technology of China, Hefei 230026, China
| | - Xin Ju
- School of Mathematics and Physics, University of Science and Technology Beijing, Beijing 100083, China
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