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Martínez-Fernández D, Pedrosa C, Herranz M, Foteinopoulou K, Karayiannis NC, Laso M. Random close packing of semi-flexible polymers in two dimensions: Emergence of local and global order. J Chem Phys 2024; 161:034902. [PMID: 39017431 DOI: 10.1063/5.0216436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2024] [Accepted: 06/28/2024] [Indexed: 07/18/2024] Open
Abstract
Through extensive Monte Carlo simulations, we systematically study the effect of chain stiffness on the packing ability of linear polymers composed of hard spheres in extremely confined monolayers, corresponding effectively to 2D films. First, we explore the limit of random close packing as a function of the equilibrium bending angle and then quantify the local and global order by the degree of crystallinity and the nematic or tetratic orientational order parameter, respectively. A multi-scale wealth of structural behavior is observed, which is inherently absent in the case of athermal individual monomers and is surprisingly richer than its 3D counterpart under bulk conditions. As a general trend, an isotropic to nematic transition is observed at sufficiently high surface coverages, which is followed by the establishment of the tetratic state, which in turn marks the onset of the random close packing. For chains with right-angle bonds, the incompatibility of the imposed bending angle with the neighbor geometry of the triangular crystal leads to a singular intra- and inter-polymer tiling pattern made of squares and triangles with optimal local filling at high surface concentrations. The present study could serve as a first step toward the design of hard colloidal polymers with a tunable structural behavior for 2D applications.
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Affiliation(s)
- Daniel Martínez-Fernández
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), C/ Jose Gutierrez Abascal 2, 28006 Madrid, Spain
| | - Clara Pedrosa
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), C/ Jose Gutierrez Abascal 2, 28006 Madrid, Spain
| | - Miguel Herranz
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), C/ Jose Gutierrez Abascal 2, 28006 Madrid, Spain
| | - Katerina Foteinopoulou
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), C/ Jose Gutierrez Abascal 2, 28006 Madrid, Spain
| | - Nikos Ch Karayiannis
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), C/ Jose Gutierrez Abascal 2, 28006 Madrid, Spain
| | - Manuel Laso
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), C/ Jose Gutierrez Abascal 2, 28006 Madrid, Spain
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Brouwers HJH. A geometric probabilistic approach to random packing of hard disks in a plane. SOFT MATTER 2023; 19:8465-8471. [PMID: 37887436 DOI: 10.1039/d3sm01254a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2023]
Abstract
In this paper, the random packing fraction of hard disks in a plane is analyzed, following a geometric probabilistic approach. First, the random close packing (RCP) of equally sized disks is modelled. Subsequently, following the same methodology, a simple, statistical geometric model is proposed for the random loose packing (RLP) of monodisperse disks. This very basic derivation of RLP leads to a packing value (≈0.66) that is in very good agreement with values that have been obtained previously for 2D disk packings. The present geometrical model also enables a closed-form expression for the contact (coordination) number as a function of the packing density at different states of compaction. These predictions are thoroughly compared with empirical and simulation results, among others the Rényi parking model, yielding good agreement.
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Affiliation(s)
- H J H Brouwers
- Department of the Built Environment, Eindhoven University of Technology, P.O. Box 513, Eindhoven 5600 MB, The Netherlands.
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3
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Zaccone A. Explicit Analytical Solution for Random Close Packing in d=2 and d=3. PHYSICAL REVIEW LETTERS 2022; 128:028002. [PMID: 35089741 DOI: 10.1103/physrevlett.128.028002] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 12/08/2021] [Indexed: 06/14/2023]
Abstract
We present an analytical derivation of the volume fractions for random close packing (RCP) in both d=3 and d=2, based on the same methodology. Using suitably modified nearest neighbor statistics for hard spheres, we obtain ϕ_{RCP}=0.658 96 in d=3 and ϕ_{RCP}=0.886 48 in d=2. These values are well within the interval of values reported in the literature using different methods (experiments and numerical simulations) and protocols. This statistical derivation suggests some considerations related to the nature of RCP: (i) RCP corresponds to the onset of mechanical rigidity where the finite shear modulus emerges, (ii) the onset of mechanical rigidity marks the maximally random jammed state and dictates ϕ_{RCP} via the coordination number z, (iii) disordered packings with ϕ>ϕ_{RCP} are possible at the expense of creating some order, and z=12 at the fcc limit acts as a boundary condition.
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Affiliation(s)
- Alessio Zaccone
- Department of Physics "A. Pontremoli," University of Milan, via Celoria 16, 20133 Milan, Italy and Cavendish Laboratory, University of Cambridge, JJ Thomson Avenue, CB30HE Cambridge, United Kingdom
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Chen Y, Wang W. Reticulate collisional structure in boundary-driven granular gases. Phys Rev E 2019; 100:042908. [PMID: 31770908 DOI: 10.1103/physreve.100.042908] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2018] [Indexed: 11/07/2022]
Abstract
We report a peculiar head-on collision network between two vibrating boundaries in experiments performed during a parabolic flight and in a laboratory using horizontal vibration. This structure is a new ordering, which is due to an orientation correlation between the relative position and velocity of any particle pair. It weakens the collision frequency and produces a long-range boundary effect. Moreover, we find the molecular chaos assumption is violated in a larger portion of the phase space. Using an anisotropic distribution model, we modify angular integration results and compare them to the results of the kinetic theory.
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Affiliation(s)
- Yanpei Chen
- State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China
| | - Wei Wang
- State Key Laboratory of Multiphase Complex Systems, Institute of Process Engineering, Chinese Academy of Sciences, Beijing 100190, China and University of Chinese Academy of Sciences, Beijing 100049, People's Republic of China
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Lovrić J, Kaliman S, Barfuss W, Schröder-Turk GE, Smith AS. Geometric effects in random assemblies of ellipses. SOFT MATTER 2019; 15:8566-8577. [PMID: 31637393 DOI: 10.1039/c9sm01067j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Assemblies of anisotropic particles commonly appear in studies of active many-body systems. However, in two dimensions, the geometric ramifications of the finite density of such objects are not entirely understood. To fully characterize these effects, we perform an in-depth study of random assemblies generated by a slow compression of frictionless elliptical particles. The obtained configurations are then analysed using the Set Voronoi tessellation, which takes the particle shape into account. Not only do we analyse most scalar and vectorial morphological measures, which are commonly discussed in the literature or which have recently been addressed in experiments, but we also systematically explore the correlations between them. While in a limited range of parameters similarities with findings in 3D assemblies could be identified, important differences are found when a broad range of aspect ratios and packing fractions are considered. The data discussed in this study should thus provide a unique reference set such that geometric effects and differences from random assemblies could be clearly identified in more complex systems, including ones with soft and active particles that are typically found in biological systems.
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Affiliation(s)
- Jakov Lovrić
- Division of Physical Chemistry, Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia
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Anghel VNP, Bolmatov D, Katsaras J. Models for randomly distributed nanoscopic domains on spherical vesicles. Phys Rev E 2018; 97:062405. [PMID: 30011588 DOI: 10.1103/physreve.97.062405] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Indexed: 06/08/2023]
Abstract
The existence of lipid domains in the plasma membrane of biological systems has proven controversial, primarily due to their nanoscopic size-a length scale difficult to interrogate with most commonly used experimental techniques. Scattering techniques have recently proven capable of studying nanoscopic lipid domains populating spherical vesicles. However, the development of analytical methods able of predicting and analyzing domain pair correlations from such experiments has not kept pace. Here, we developed models for the random distribution of monodisperse, circular nanoscopic domains averaged on the surface of a spherical vesicle. Specifically, the models take into account (i) intradomain correlations corresponding to form factors and interdomain correlations corresponding to pair distribution functions, and (ii) the analytical computation of interdomain correlations for cases of two and three domains on a spherical vesicle. In the case of more than three domains, these correlations are treated either by Monte Carlo simulations or by spherical analogs of the Ornstein-Zernike and Percus-Yevick (PY) equations. Importantly, the spherical analog of the PY equation works best in the case of nanoscopic size domains, a length scale that is mostly inaccessible by experimental approaches such as, for example, fluorescent techniques and optical microscopies. The analytical form factors and structure factors of nanoscopic domains populating a spherical vesicle provide a new and important framework for the quantitative analysis of experimental data from commonly studied phase-separated vesicles used in a wide range of biophysical studies.
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Affiliation(s)
- Vinicius N P Anghel
- Nuclear Engineering and Systems Division, Canadian Nuclear Laboratories, Plant Road, Chalk River, Ontario, Canada K0J 1J0
| | - Dima Bolmatov
- Neutron Scattering Division, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, Tennessee 37831-6453, USA
- Department of Physics and Astronomy, University of Tennessee, Knoxville, Tennessee 37996, USA
| | - John Katsaras
- Neutron Scattering Division, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, Tennessee 37831-6453, USA
- Department of Physics and Astronomy, University of Tennessee, Knoxville, Tennessee 37996, USA
- Shull Wollan Center, Oak Ridge National Laboratory, P.O. Box 2008, Oak Ridge, Tennessee 37831-6453, USA
- Department of Physics, Brock University, 500 Glendale Avenue, St. Catharines, Ontario, Canada L2S 3A1
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Yamchi MZ, Ashwin SS, Bowles RK. Inherent structures, fragility, and jamming: insights from quasi-one-dimensional hard disks. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:022301. [PMID: 25768499 DOI: 10.1103/physreve.91.022301] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2014] [Indexed: 06/04/2023]
Abstract
We study a quasi-one-dimensional system of hard disks confined between hard lines to explore the relationship between the inherent structure landscape, the thermodynamics, and the dynamics of the fluid. The transfer matrix method is used to obtain an exact description of the landscape, equation of state, and provide a mapping of configurations of the equilibrium fluid to their local jammed structures. This allows us to follow how the system samples the landscape as a function of occupied volume fraction ϕ. Configurations of the ideal gas map to the maximum in the distribution of inherent structures, with a jamming volume fraction ϕ(J)(*), and sample more dense basins with increasing ϕ. This suggests jammed states with a density below ϕ(J)(*) are inaccessible from the equilibrium fluid. The configurational entropy of the fluid decreases rapidly at intermediate ϕ before plateauing at a low value and going to zero as the most dense packing is approached. This leads to the appearance of a maximum in both the isobaric heat capacity and the inherent structure pressure. We also show that the system exhibits a crossover from fragile to strong fluid behavior, located at the heat capacity maximum. Structural relaxation in the fragile fluid is shown to be controlled by the presence of high order saddle points caused by neighboring defects that are unstable with respect to jamming and spontaneously rearrange to form a stable local environment. In the strong fluid, the defect concentration is low so that defects do not interact and relaxation occurs through the hopping of isolated defects between stable local packing environments.
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Affiliation(s)
- Mahdi Zaeifi Yamchi
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan, Canada S7N 5C9
| | - S S Ashwin
- Department of Computational Science and Engineering, Nagoya University, Aichi, Japan
| | - Richard K Bowles
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan, Canada S7N 5C9
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Ekman A, Miettinen A, Tallinen T, Timonen J. Contact formation in random networks of elongated objects. PHYSICAL REVIEW LETTERS 2014; 113:268001. [PMID: 25615387 DOI: 10.1103/physrevlett.113.268001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2014] [Indexed: 06/04/2023]
Abstract
The effect of steric hindrance is an important aspect of granular packings as it gives rise to, e.g., limitations on the densities of ordered and disordered packings, both of which are essentially defined by the geometry of the constituents. Here we focus on the random packing of rods via deposition and their distributions of contact number and segment length. Such statistical properties are relevant for mechanical properties of the structures, but the (quite large) steric effects on them have not been addressed in previous studies. We therefore develop a theory that describes the statistical properties of rod packings, while taking into account that the deposited rods cannot overlap and thus induce steric hindrances. The distributions derived from the theory are compared with experimental results and numerical simulations of networks constructed via deposition. The results explain the non-Poisson statistics observed in the experiments and show that the induced steric range of the rods can be large compared to their diameter and decreases with compactification of the pile, implying local orientational ordering of the structure.
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Affiliation(s)
- A Ekman
- Department of Physics and Nanoscience Center, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
| | - A Miettinen
- Department of Physics and Nanoscience Center, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
| | - T Tallinen
- Department of Physics and Nanoscience Center, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
| | - J Timonen
- Department of Physics and Nanoscience Center, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland and Saint-Petersburg State University of Information Technologies, Mechanics and Optics, 49 Kronverksky Avenue, 197101 St. Petersburg, Russia
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9
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Xia C, Cao Y, Kou B, Li J, Wang Y, Xiao X, Fezzaa K. Angularly anisotropic correlation in granular packings. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:062201. [PMID: 25615079 DOI: 10.1103/physreve.90.062201] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2012] [Indexed: 06/04/2023]
Abstract
We present an x-ray microtomography study of the three-dimensional structural correlations in monodisperse granular packings. By measuring an orientation-dependent pair correlation function, we find that the local structure shows an angularly anisotropic orientation correlation. The correlation is strongest along the major axis of the local Minkowski tensor of the Voronoi cell. It turns out that this anisotropic correlation is consistent with the existence of some locally favored structures. The study suggests the importance of high-order structural correlations in random granular packings.
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Affiliation(s)
- Chengjie Xia
- Department of Physics and Astronomy, Shanghai Jiao Tong University, 800 Dong Chuan Road, Shanghai 200240, China
| | - Yixin Cao
- Department of Physics and Astronomy, Shanghai Jiao Tong University, 800 Dong Chuan Road, Shanghai 200240, China
| | - Binquan Kou
- Department of Physics and Astronomy, Shanghai Jiao Tong University, 800 Dong Chuan Road, Shanghai 200240, China
| | - Jindong Li
- Department of Physics and Astronomy, Shanghai Jiao Tong University, 800 Dong Chuan Road, Shanghai 200240, China
| | - Yujie Wang
- Department of Physics and Astronomy, Shanghai Jiao Tong University, 800 Dong Chuan Road, Shanghai 200240, China
| | - Xianghui Xiao
- Advanced Photon Source, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, USA
| | - Kamel Fezzaa
- Advanced Photon Source, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, USA
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10
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Non-monotonic dependence of the friction coefficient on heterogeneous stiffness. Sci Rep 2014; 4:6772. [PMID: 25345800 PMCID: PMC4209463 DOI: 10.1038/srep06772] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2014] [Accepted: 10/03/2014] [Indexed: 11/08/2022] Open
Abstract
The complexity of the frictional dynamics at the microscopic scale makes difficult to identify all of its controlling parameters. Indeed, experiments on sheared elastic bodies have shown that the static friction coefficient depends on loading conditions, the real area of contact along the interfaces and the confining pressure. Here we show, by means of numerical simulations of a 2D Burridge-Knopoff model with a simple local friction law, that the macroscopic friction coefficient depends non-monotonically on the bulk elasticity of the system. This occurs because elastic constants control the geometrical features of the rupture fronts during the stick-slip dynamics, leading to four different ordering regimes characterized by different orientations of the rupture fronts with respect to the external shear direction. We rationalize these results by means of an energetic balance argument.
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