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FNS allows efficient event-driven spiking neural network simulations based on a neuron model supporting spike latency. Sci Rep 2021; 11:12160. [PMID: 34108523 PMCID: PMC8190312 DOI: 10.1038/s41598-021-91513-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2021] [Accepted: 05/24/2021] [Indexed: 02/05/2023] Open
Abstract
Neural modelling tools are increasingly employed to describe, explain, and predict the human brain's behavior. Among them, spiking neural networks (SNNs) make possible the simulation of neural activity at the level of single neurons, but their use is often threatened by the resources needed in terms of processing capabilities and memory. Emerging applications where a low energy burden is required (e.g. implanted neuroprostheses) motivate the exploration of new strategies able to capture the relevant principles of neuronal dynamics in reduced and efficient models. The recent Leaky Integrate-and-Fire with Latency (LIFL) spiking neuron model shows some realistic neuronal features and efficiency at the same time, a combination of characteristics that may result appealing for SNN-based brain modelling. In this paper we introduce FNS, the first LIFL-based SNN framework, which combines spiking/synaptic modelling with the event-driven approach, allowing us to define heterogeneous neuron groups and multi-scale connectivity, with delayed connections and plastic synapses. FNS allows multi-thread, precise simulations, integrating a novel parallelization strategy and a mechanism of periodic dumping. We evaluate the performance of FNS in terms of simulation time and used memory, and compare it with those obtained with neuronal models having a similar neurocomputational profile, implemented in NEST, showing that FNS performs better in both scenarios. FNS can be advantageously used to explore the interaction within and between populations of spiking neurons, even for long time-scales and with a limited hardware configuration.
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Suppressing bursting synchronization in a modular neuronal network with synaptic plasticity. Cogn Neurodyn 2018; 12:625-636. [PMID: 30483370 DOI: 10.1007/s11571-018-9498-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2017] [Revised: 06/11/2018] [Accepted: 08/01/2018] [Indexed: 10/28/2022] Open
Abstract
Excessive synchronization of neurons in cerebral cortex is believed to play a crucial role in the emergence of neuropsychological disorders such as Parkinson's disease, epilepsy and essential tremor. This study, by constructing a modular neuronal network with modified Oja's learning rule, explores how to eliminate the pathological synchronized rhythm of interacted busting neurons numerically. When all neurons in the modular neuronal network are strongly synchronous within a specific range of coupling strength, the result reveals that synaptic plasticity with large learning rate can suppress bursting synchronization effectively. For the relative small learning rate not capable of suppressing synchronization, the technique of nonlinear delayed feedback control including differential feedback control and direct feedback control is further proposed to reduce the synchronized bursting state of coupled neurons. It is demonstrated that the two kinds of nonlinear feedback control can eliminate bursting synchronization significantly when the control parameters of feedback strength and feedback delay are appropriately tuned. For the former control technique, the control domain of effective synchronization suppression is similar to a semi-elliptical domain in the simulated parameter space of feedback strength and feedback delay, while for the latter one, the effective control domain is similar to a fan-shaped domain in the simulated parameter space.
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Maslennikov OV, Nekorkin VI, Kurths J. Transient chaos in the Lorenz-type map with periodic forcing. CHAOS (WOODBURY, N.Y.) 2018; 28:033107. [PMID: 29604659 DOI: 10.1063/1.5018265] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We consider a case study of perturbing a system with a boundary crisis of a chaotic attractor by periodic forcing. In the static case, the system exhibits persistent chaos below the critical value of the control parameter but transient chaos above the critical value. We discuss what happens to the system and particularly to the transient chaotic dynamics if the control parameter periodically oscillates. We find a non-exponential decaying behavior of the survival probability function, study the impact of the forcing frequency and amplitude on the escape rate, analyze the phase-space image of the observed dynamics, and investigate the influence of initial conditions.
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Affiliation(s)
- Oleg V Maslennikov
- Institute of Applied Physics of the Russian Academy of Sciences, 46 Ulyanov Street, 603950 Nizhny Novgorod, Russia
| | - Vladimir I Nekorkin
- Institute of Applied Physics of the Russian Academy of Sciences, 46 Ulyanov Street, 603950 Nizhny Novgorod, Russia
| | - Jürgen Kurths
- Institute of Applied Physics of the Russian Academy of Sciences, 46 Ulyanov Street, 603950 Nizhny Novgorod, Russia
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Franović I, Maslennikov OV, Bačić I, Nekorkin VI. Mean-field dynamics of a population of stochastic map neurons. Phys Rev E 2018; 96:012226. [PMID: 29347187 DOI: 10.1103/physreve.96.012226] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2017] [Indexed: 11/07/2022]
Abstract
We analyze the emergent regimes and the stimulus-response relationship of a population of noisy map neurons by means of a mean-field model, derived within the framework of cumulant approach complemented by the Gaussian closure hypothesis. It is demonstrated that the mean-field model can qualitatively account for stability and bifurcations of the exact system, capturing all the generic forms of collective behavior, including macroscopic excitability, subthreshold oscillations, periodic or chaotic spiking, and chaotic bursting dynamics. Apart from qualitative analogies, we find a substantial quantitative agreement between the exact and the approximate system, as reflected in matching of the parameter domains admitting the different dynamical regimes, as well as the characteristic properties of the associated time series. The effective model is further shown to reproduce with sufficient accuracy the phase response curves of the exact system and the assembly's response to external stimulation of finite amplitude and duration.
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Affiliation(s)
- Igor Franović
- Scientific Computing Laboratory, Center for the Study of Complex Systems, Institute of Physics Belgrade, University of Belgrade, Pregrevica 118, 11080 Belgrade, Serbia
| | - Oleg V Maslennikov
- Institute of Applied Physics of the Russian Academy of Sciences, 46 Ulyanov Street, 603950 Nizhny Novgorod, Russia
| | - Iva Bačić
- Scientific Computing Laboratory, Center for the Study of Complex Systems, Institute of Physics Belgrade, University of Belgrade, Pregrevica 118, 11080 Belgrade, Serbia
| | - Vladimir I Nekorkin
- Institute of Applied Physics of the Russian Academy of Sciences, 46 Ulyanov Street, 603950 Nizhny Novgorod, Russia
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Kasatkin DV, Yanchuk S, Schöll E, Nekorkin VI. Self-organized emergence of multilayer structure and chimera states in dynamical networks with adaptive couplings. Phys Rev E 2017; 96:062211. [PMID: 29347359 DOI: 10.1103/physreve.96.062211] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2017] [Indexed: 06/07/2023]
Abstract
We report the phenomenon of self-organized emergence of hierarchical multilayered structures and chimera states in dynamical networks with adaptive couplings. This process is characterized by a sequential formation of subnetworks (layers) of densely coupled elements, the size of which is ordered in a hierarchical way, and which are weakly coupled between each other. We show that the hierarchical structure causes the decoupling of the subnetworks. Each layer can exhibit either a two-cluster state, a periodic traveling wave, or an incoherent state, and these states can coexist on different scales of subnetwork sizes.
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Affiliation(s)
- D V Kasatkin
- Institute of Applied Physics of RAS, 46 Ulyanov Street, 603950, Nizhny Novgorod, Russia
| | - S Yanchuk
- Institut für Theoretische Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - E Schöll
- Institut für Theoretische Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - V I Nekorkin
- Institute of Applied Physics of RAS, 46 Ulyanov Street, 603950, Nizhny Novgorod, Russia
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Maslennikov OV, Shchapin DS, Nekorkin VI. Transient sequences in a hypernetwork generated by an adaptive network of spiking neurons. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2017; 375:20160288. [PMID: 28507233 PMCID: PMC5434079 DOI: 10.1098/rsta.2016.0288] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 11/24/2016] [Indexed: 05/24/2023]
Abstract
We propose a model of an adaptive network of spiking neurons that gives rise to a hypernetwork of its dynamic states at the upper level of description. Left to itself, the network exhibits a sequence of transient clustering which relates to a traffic in the hypernetwork in the form of a random walk. Receiving inputs the system is able to generate reproducible sequences corresponding to stimulus-specific paths in the hypernetwork. We illustrate these basic notions by a simple network of discrete-time spiking neurons together with its FPGA realization and analyse their properties.This article is part of the themed issue 'Mathematical methods in medicine: neuroscience, cardiology and pathology'.
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Affiliation(s)
- Oleg V Maslennikov
- Institute of Applied Physics of the Russian Academy of Sciences, 46 Ulyanov Street, 603950 Nizhny Novgorod, Russia
| | - Dmitry S Shchapin
- Institute of Applied Physics of the Russian Academy of Sciences, 46 Ulyanov Street, 603950 Nizhny Novgorod, Russia
| | - Vladimir I Nekorkin
- Institute of Applied Physics of the Russian Academy of Sciences, 46 Ulyanov Street, 603950 Nizhny Novgorod, Russia
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Yilmaz E, Ozer M, Baysal V, Perc M. Autapse-induced multiple coherence resonance in single neurons and neuronal networks. Sci Rep 2016; 6:30914. [PMID: 27480120 PMCID: PMC4969620 DOI: 10.1038/srep30914] [Citation(s) in RCA: 136] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2016] [Accepted: 07/08/2016] [Indexed: 12/28/2022] Open
Abstract
We study the effects of electrical and chemical autapse on the temporal coherence or firing regularity of single stochastic Hodgkin-Huxley neurons and scale-free neuronal networks. Also, we study the effects of chemical autapse on the occurrence of spatial synchronization in scale-free neuronal networks. Irrespective of the type of autapse, we observe autaptic time delay induced multiple coherence resonance for appropriately tuned autaptic conductance levels in single neurons. More precisely, we show that in the presence of an electrical autapse, there is an optimal intensity of channel noise inducing the multiple coherence resonance, whereas in the presence of chemical autapse the occurrence of multiple coherence resonance is less sensitive to the channel noise intensity. At the network level, we find autaptic time delay induced multiple coherence resonance and synchronization transitions, occurring at approximately the same delay lengths. We show that these two phenomena can arise only at a specific range of the coupling strength, and that they can be observed independently of the average degree of the network.
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Affiliation(s)
- Ergin Yilmaz
- Bülent Ecevit University, Department of Biomedical Engineering, Zonguldak, 67100, Turkey
| | - Mahmut Ozer
- Bülent Ecevit University, Department of Electrical-Electronics Engineering, Zonguldak, 67100, Turkey
| | - Veli Baysal
- Bülent Ecevit University, Department of Biomedical Engineering, Zonguldak, 67100, Turkey
| | - Matjaž Perc
- Faculty of Natural Sciences and Mathematics, University of Maribor, Koroška cesta 160, SI-2000 Maribor, Slovenia
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Maslennikov OV, Nekorkin VI. Attractors of relaxation discrete-time systems with chaotic dynamics on a fast time scale. CHAOS (WOODBURY, N.Y.) 2016; 26:073104. [PMID: 27475064 DOI: 10.1063/1.4955084] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
In this work, a new type of relaxation systems is considered. Their prominent feature is that they comprise two distinct epochs, one is slow regular motion and another is fast chaotic motion. Unlike traditionally studied slow-fast systems that have smooth manifolds of slow motions in the phase space and fast trajectories between them, in this new type one observes, apart the same geometric objects, areas of transient chaos. Alternating periods of slow regular motions and fast chaotic ones as well as transitions between them result in a specific chaotic attractor with chaos on a fast time scale. We formulate basic properties of such attractors in the framework of discrete-time systems and consider several examples. Finally, we provide an important application of such systems, the neuronal electrical activity in the form of chaotic spike-burst oscillations.
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Maslennikov OV, Nekorkin VI, Kurths J. Basin stability for burst synchronization in small-world networks of chaotic slow-fast oscillators. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:042803. [PMID: 26565285 DOI: 10.1103/physreve.92.042803] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2015] [Indexed: 06/05/2023]
Abstract
The impact of connectivity and individual dynamics on the basin stability of the burst synchronization regime in small-world networks consisting of chaotic slow-fast oscillators is studied. It is shown that there are rewiring probabilities corresponding to the largest basin stabilities, which uncovers a reason for finding small-world topologies in real neuronal networks. The impact of coupling density and strength as well as the nodal parameters of relaxation or excitability are studied. Dynamic mechanisms are uncovered that most strongly influence basin stability of the burst synchronization regime.
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Affiliation(s)
- Oleg V Maslennikov
- Institute of Applied Physics, Russian Academy of Sciences, 46 Ul'yanov street, 603950, Nizhny Novgorod, Russia
| | - Vladimir I Nekorkin
- Institute of Applied Physics, Russian Academy of Sciences, 46 Ul'yanov street, 603950, Nizhny Novgorod, Russia
| | - Jürgen Kurths
- Institute of Applied Physics, Russian Academy of Sciences, 46 Ul'yanov street, 603950, Nizhny Novgorod, Russia
- Potsdam Institute for Climate Impact Research, Telegraphenberg, D-14415 Potsdam, Germany
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