1
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Akimoto T, Sera T, Yamato K, Yano K. Aging arcsine law in Brownian motion and its generalization. Phys Rev E 2020; 102:032103. [PMID: 33075938 DOI: 10.1103/physreve.102.032103] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Accepted: 08/12/2020] [Indexed: 06/11/2023]
Abstract
Classical arcsine law states that the fraction of occupation time on the positive or the negative side in Brownian motion does not converge to a constant but converges in distribution to the arcsine distribution. Here we consider how a preparation of the system affects the arcsine law, i.e., aging of the arcsine law. We derive an aging distributional theorem for occupation time statistics in Brownian motion, where the ratio of time when measurements start to the measurement time plays an important role in determining the shape of the distribution. Furthermore, we show that this result can be generalized as an aging distributional limit theorem in renewal processes.
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Affiliation(s)
- Takuma Akimoto
- Department of Physics, Tokyo University of Science, Noda, Chiba 278-8510, Japan
| | - Toru Sera
- Department of Mathematics, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Kosuke Yamato
- Department of Mathematics, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
| | - Kouji Yano
- Department of Mathematics, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
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2
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Akimoto T, Barkai E, Radons G. Infinite invariant density in a semi-Markov process with continuous state variables. Phys Rev E 2020; 101:052112. [PMID: 32575214 DOI: 10.1103/physreve.101.052112] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2019] [Accepted: 04/09/2020] [Indexed: 06/11/2023]
Abstract
We report on a fundamental role of a non-normalized formal steady state, i.e., an infinite invariant density, in a semi-Markov process where the state is determined by the interevent time of successive renewals. The state describes certain observables found in models of anomalous diffusion, e.g., the velocity in the generalized Lévy walk model and the energy of a particle in the trap model. In our model, the interevent-time distribution follows a fat-tailed distribution, which makes the state value more likely to be zero because long interevent times imply small state values. We find two scaling laws describing the density for the state value, which accumulates in the vicinity of zero in the long-time limit. These laws provide universal behaviors in the accumulation process and give the exact expression of the infinite invariant density. Moreover, we provide two distributional limit theorems for time-averaged observables in these nonstationary processes. We show that the infinite invariant density plays an important role in determining the distribution of time averages.
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Affiliation(s)
- Takuma Akimoto
- Department of Physics, Tokyo University of Science, Noda, Chiba 278-8510, Japan
| | - Eli Barkai
- Department of Physics, Bar-Ilan University, Ramat-Gan
| | - Günter Radons
- Institute of Physics, Chemnitz University of Technology, 09107 Chemnitz, Germany
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3
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Akimoto T, Saito K. Trace of anomalous diffusion in a biased quenched trap model. Phys Rev E 2020; 101:042133. [PMID: 32422836 DOI: 10.1103/physreve.101.042133] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 04/07/2020] [Indexed: 06/11/2023]
Abstract
Diffusion in a quenched heterogeneous environment in the presence of bias is considered analytically. The first-passage-time statistics can be applied to obtain the drift and the diffusion coefficient in periodic quenched environments. We show several transition points at which sample-to-sample fluctuations of the drifts or the diffusion coefficients remain large even when the system size becomes large, i.e., non-self-averaging. Moreover, we find that the disorder average of the diffusion coefficient diverges or becomes 0 when the corresponding annealed model generates superdiffusion or subdiffusion, respectively. This result implies that anomalous diffusion in an annealed model is traced by anomaly of the diffusion coefficients in the corresponding quenched model.
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Affiliation(s)
- Takuma Akimoto
- Department of Physics, Tokyo University of Science, Noda, Chiba 278-8510, Japan
| | - Keiji Saito
- Department of Physics, Keio University, Yokohama 223-8522, Japan
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4
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Pronin KA. Fluctuations and self-averaging in random trapping transport: The diffusion coefficient. Phys Rev E 2020; 101:022132. [PMID: 32168707 DOI: 10.1103/physreve.101.022132] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2018] [Accepted: 02/07/2020] [Indexed: 11/07/2022]
Abstract
On the basis of a self-consistent cluster effective-medium approximation for random trapping transport, we study the problem of self-averaging of the diffusion coefficient in a nonstationary formulation. In the long-time domain, we investigate different cases that correspond to the increasing degree of disorder. In the regular and subregular cases the diffusion coefficient is found to be a self-averaging quantity-its relative fluctuations (relative standard deviation) decay in time in a power-law fashion. In the subdispersive case the diffusion coefficient is self-averaging in three dimensions (3D) and weakly self-averaging in two dimensions (2D) and one dimension (1D), when its relative fluctuations decay anomalously slowly logarithmically. In the dispersive case, the diffusion coefficient is self-averaging in 3D, weakly self-averaging in 2D, and non-self-averaging in 1D. When non-self-averaging, its fluctuations remain of the same order as, or larger than, its average value. In the irreversible case, the diffusion coefficient is non-self-averaging in any dimension. In general, with the decreasing dimension and/or increasing disorder, the self-averaging worsens and eventually disappears. In the cases of weak self-averaging and, especially, non-self-averaging, the reliable reproducible experimental measurements are highly problematic. In all the cases under consideration, asymptotics with prefactors are obtained beyond the scaling laws. Transition between all cases is analyzed as the disorder increases.
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Affiliation(s)
- K A Pronin
- Institute of Biochemical Physics, Russian Academy of Sciences, Moscow, Kosygin Street 4, 119 334, Russia
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5
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Tateishi AA, Ribeiro HV, Sandev T, Petreska I, Lenzi EK. Quenched and annealed disorder mechanisms in comb models with fractional operators. Phys Rev E 2020; 101:022135. [PMID: 32168676 DOI: 10.1103/physreve.101.022135] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Accepted: 02/11/2020] [Indexed: 06/10/2023]
Abstract
Recent experimental findings on anomalous diffusion have demanded novel models that combine annealed (temporal) and quenched (spatial or static) disorder mechanisms. The comb model is a simplified description of diffusion on percolation clusters, where the comblike structure mimics quenched disorder mechanisms and yields a subdiffusive regime. Here we extend the comb model to simultaneously account for quenched and annealed disorder mechanisms. To do so, we replace usual derivatives in the comb diffusion equation by different fractional time-derivative operators and the conventional comblike structure by a generalized fractal structure. Our hybrid comb models thus represent a diffusion where different comblike structures describe different quenched disorder mechanisms, and the fractional operators account for various annealed disorder mechanisms. We find exact solutions for the diffusion propagator and mean square displacement in terms of different memory kernels used for defining the fractional operators. Among other findings, we show that these models describe crossovers from subdiffusion to Brownian or confined diffusions, situations emerging in empirical results. These results reveal the critical role of interactions between geometrical restrictions and memory effects on modeling anomalous diffusion.
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Affiliation(s)
- A A Tateishi
- Departamento de Física, Universidade Tecnologica Federal de Pato Branco, Pato Branco, Paraná 85503-390, Brazil
| | - H V Ribeiro
- Departamento de Física, Universidade Estadual de Maringá, Maringá, Paraná 87020-900, Brazil
| | - T Sandev
- Research Center for Computer Science and Information Technologies, Macedonian Academy of Sciences and Arts, Bul. Krste Misirkov 2, 1000 Skopje, Macedonia
- Institute of Physics & Astronomy, University of Potsdam, D-14776 Potsdam-Golm, Germany
- Institute of Physics, Faculty of Natural Sciences and Mathematics, Ss Cyril and Methodius University, Arhimedova 3, 1000 Skopje, Macedonia
| | - I Petreska
- Institute of Physics, Faculty of Natural Sciences and Mathematics, Ss Cyril and Methodius University, Arhimedova 3, 1000 Skopje, Macedonia
| | - E K Lenzi
- Departamento de Física, Universidade Estadual de Ponta Grossa, Av. Carlos Cavalcanti 4748, 84030-900 Ponta Grossa, Paraná, Brazil
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6
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Schwarcz D, Burov S. The effect of disordered substrate on crystallization in 2D. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2019; 31:445401. [PMID: 31195377 DOI: 10.1088/1361-648x/ab29c3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
In this work, the effect of amorphous substrate on crystallization is addressed. By performing Monte-Carlo simulations of solid on solid models, we explore the effect of the disorder on crystal growth. The disorder is introduced via local geometry of the lattice, where local connectivity and transition rates are varied from site to site. A comparison to an ordered lattice is accomplished and for both, ordered and disordered substrates, an optimal growth temperature is observed. Moreover, we find that under specific conditions the disordered substrate may have a beneficial effect on crystal growth, i.e. better crystallization as a direct consequence of the presence of disorder.
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Affiliation(s)
- Deborah Schwarcz
- Physics Department, Bar-Ilan University, Ramat Gan 5290002, Israel
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7
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Akimoto T, Saito K. Exact results for first-passage-time statistics in biased quenched trap models. Phys Rev E 2019; 99:052127. [PMID: 31212478 DOI: 10.1103/physreve.99.052127] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Indexed: 11/07/2022]
Abstract
We provide exact results for the mean and variance of first-passage times (FPTs) of making a directed revolution in the presence of a bias in heterogeneous quenched environments where the disorder is expressed by random traps on a ring with period L. FPT statistics are crucially affected by the disorder realization. In the large-L limit, we obtain exact formulas for the FPT statistics, which are described by the sample mean and variance for waiting times of periodically arranged traps. Furthermore, we find that these formulas are still useful for nonperiodic heterogeneous environments; i.e., the results are valid for almost all disorder realizations. Our findings are fundamentally important for the application of FPT to estimate diffusivity of a heterogeneous environment under a bias.
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Affiliation(s)
- Takuma Akimoto
- Department of Physics, Tokyo University of Science, Noda, Chiba 278-8510, Japan
| | - Keiji Saito
- Department of Physics, Keio University, Yokohama 223-8522, Japan
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8
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Akimoto T, Cherstvy AG, Metzler R. Ergodicity, rejuvenation, enhancement, and slow relaxation of diffusion in biased continuous-time random walks. Phys Rev E 2018; 98:022105. [PMID: 30253516 DOI: 10.1103/physreve.98.022105] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2018] [Indexed: 06/08/2023]
Abstract
Bias plays an important role in the enhancement of diffusion in periodic potentials. Using the continuous-time random walk in the presence of a bias, we report on an interesting phenomenon for the enhancement of diffusion by the start of the measurement in a random energy landscape. When the variance of the waiting time diverges, in contrast to the bias-free case, the dynamics with bias becomes superdiffusive. In the superdiffusive regime, we find a distinct initial ensemble dependence of the diffusivity. Moreover, the diffusivity can be increased by the aging time when the initial ensemble is not in equilibrium. We show that the time-averaged variance converges to the corresponding ensemble-averaged variance; i.e., ergodicity is preserved. However, trajectory-to-trajectory fluctuations of the time-averaged variance decay unexpectedly slowly. Our findings provide a rejuvenation phenomenon in the superdiffusive regime, that is, the diffusivity for a nonequilibrium initial ensemble gradually increases to that for an equilibrium ensemble when the start of the measurement is delayed.
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Affiliation(s)
- Takuma Akimoto
- Department of Physics, Tokyo University of Science, Noda, Chiba 278-8510, Japan
| | - Andrey G Cherstvy
- Institute for Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
| | - Ralf Metzler
- Institute for Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
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9
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Scalable photonic reinforcement learning by time-division multiplexing of laser chaos. Sci Rep 2018; 8:10890. [PMID: 30022085 PMCID: PMC6052166 DOI: 10.1038/s41598-018-29117-y] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Accepted: 07/05/2018] [Indexed: 11/24/2022] Open
Abstract
Reinforcement learning involves decision-making in dynamic and uncertain environments and constitutes a crucial element of artificial intelligence. In our previous work, we experimentally demonstrated that the ultrafast chaotic oscillatory dynamics of lasers can be used to efficiently solve the two-armed bandit problem, which requires decision-making concerning a class of difficult trade-offs called the exploration–exploitation dilemma. However, only two selections were employed in that research; hence, the scalability of the laser-chaos-based reinforcement learning should be clarified. In this study, we demonstrated a scalable, pipelined principle of resolving the multi-armed bandit problem by introducing time-division multiplexing of chaotically oscillated ultrafast time series. The experimental demonstrations in which bandit problems with up to 64 arms were successfully solved are presented where laser chaos time series significantly outperforms quasiperiodic signals, computer-generated pseudorandom numbers, and coloured noise. Detailed analyses are also provided that include performance comparisons among laser chaos signals generated in different physical conditions, which coincide with the diffusivity inherent in the time series. This study paves the way for ultrafast reinforcement learning by taking advantage of the ultrahigh bandwidths of light wave and practical enabling technologies.
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10
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Diffusion on Middle- ξ Cantor Sets. ENTROPY 2018; 20:e20070504. [PMID: 33265594 PMCID: PMC7513040 DOI: 10.3390/e20070504] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/23/2018] [Revised: 06/06/2018] [Accepted: 06/06/2018] [Indexed: 11/16/2022]
Abstract
In this paper, we study Cζ-calculus on generalized Cantor sets, which have self-similar properties and fractional dimensions that exceed their topological dimensions. Functions with fractal support are not differentiable or integrable in terms of standard calculus, so we must involve local fractional derivatives. We have generalized the Cζ-calculus on the generalized Cantor sets known as middle-ξ Cantor sets. We have suggested a calculus on the middle-ξ Cantor sets for different values of ξ with 0<ξ<1. Differential equations on the middle-ξ Cantor sets have been solved, and we have presented the results using illustrative examples. The conditions for super-, normal, and sub-diffusion on fractal sets are given.
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11
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Akimoto T, Barkai E, Saito K. Non-self-averaging behaviors and ergodicity in quenched trap models with finite system sizes. Phys Rev E 2018; 97:052143. [PMID: 29906876 DOI: 10.1103/physreve.97.052143] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2018] [Indexed: 06/08/2023]
Abstract
Tracking tracer particles in heterogeneous environments plays an important role in unraveling material properties. These heterogeneous structures are often static and depend on the sample realizations. Sample-to-sample fluctuations of such disorder realizations sometimes become considerably large. When we investigate the sample-to-sample fluctuations, fundamental averaging procedures are a thermal average for a single disorder realization and the disorder average for different disorder realizations. Here we report on non-self-averaging phenomena in quenched trap models with finite system sizes, where we consider the periodic and the reflecting boundary conditions. Sample-to-sample fluctuations of diffusivity greatly exceed trajectory-to-trajectory fluctuations of diffusivity in the corresponding annealed model. For a single disorder realization, the time-averaged mean square displacement and position-dependent observables converge to constants because of the existence of the equilibrium distribution. This is a manifestation of ergodicity. As a result, the time-averaged quantities depend neither on the initial condition nor on the thermal histories but depend crucially on the disorder realization.
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Affiliation(s)
- Takuma Akimoto
- Department of Physics, Tokyo University of Science, Noda, Chiba 278-8510, Japan
| | - Eli Barkai
- Department of Physics, Bar Ilan University, Ramat-Gan 52900, Israel
| | - Keiji Saito
- Department of Physics, Keio University, Yokohama 223-8522, Japan
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12
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Miyaguchi T. Elucidating fluctuating diffusivity in center-of-mass motion of polymer models with time-averaged mean-square-displacement tensor. Phys Rev E 2017; 96:042501. [PMID: 29347492 DOI: 10.1103/physreve.96.042501] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2017] [Indexed: 06/07/2023]
Abstract
There have been increasing reports that the diffusion coefficient of macromolecules depends on time and fluctuates randomly. Here a method is developed to elucidate this fluctuating diffusivity from trajectory data. Time-averaged mean-square displacement (MSD), a common tool in single-particle-tracking (SPT) experiments, is generalized to a second-order tensor with which both magnitude and orientation fluctuations of the diffusivity can be clearly detected. This method is used to analyze the center-of-mass motion of four fundamental polymer models: the Rouse model, the Zimm model, a reptation model, and a rigid rodlike polymer. It is found that these models exhibit distinctly different types of magnitude and orientation fluctuations of diffusivity. This is an advantage of the present method over previous ones, such as the ergodicity-breaking parameter and a non-Gaussian parameter, because with either of these parameters it is difficult to distinguish the dynamics of the four polymer models. Also, the present method of a time-averaged MSD tensor could be used to analyze trajectory data obtained in SPT experiments.
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Affiliation(s)
- Tomoshige Miyaguchi
- Department of Mathematics, Naruto University of Education, Tokushima 772-8502, Japan
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13
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Ma YD, Luo KF. Anomalous and Normal Diffusion of Tracers in Crowded Environments: Effect of Size Disparity between Tracer and Crowders. CHINESE J CHEM PHYS 2017. [DOI: 10.1063/1674-0068/30/cjcp1609184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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14
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Thiel F, Sokolov IM. Time averages in continuous-time random walks. Phys Rev E 2017; 95:022108. [PMID: 28297905 DOI: 10.1103/physreve.95.022108] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2016] [Indexed: 06/06/2023]
Abstract
We investigate the time-averaged square displacement (TASD) of continuous-time random walks with respect to the number of steps N which the random walker performed during the data acquisition time T. We prove that in each realization the TASD grows asymptotically linear in the lag time τ and in N, provided the steps cannot accumulate in small intervals. Consequently, the fluctuations of the latter are dominated by the fluctuations of N, and fluctuations of the walker's thermal history are irrelevant. Furthermore, we show that the relative scatter decays as 1/sqrt[N], which suppresses all nonlinear features in a plot of the TASD against the lag time. Parts of our arguments also hold for continuous-time random walks with correlated steps or with correlated waiting times.
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Affiliation(s)
- Felix Thiel
- Institut für Physik, Humboldt Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany
| | - Igor M Sokolov
- Institut für Physik, Humboldt Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany
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15
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Aarão Reis FDA. Scaling relations in the diffusive infiltration in fractals. Phys Rev E 2016; 94:052124. [PMID: 27967172 DOI: 10.1103/physreve.94.052124] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2016] [Indexed: 06/06/2023]
Abstract
In a recent work on fluid infiltration in a Hele-Shaw cell with the pore-block geometry of Sierpinski carpets (SCs), the area filled by the invading fluid was shown to scale as F∼t^{n}, with n<1/2, thus providing a macroscopic realization of anomalous diffusion [Filipovitch et al., Water Resour. Res. 52, 5167 (2016)WRERAQ0043-139710.1002/2016WR018667]. The results agree with simulations of a diffusion equation with constant pressure at one of the borders of those fractals, but the exponent n is very different from the anomalous exponent ν=1/D_{W} of single-particle diffusion in the same fractals (D_{W} is the random-walk dimension). Here we use a scaling approach to show that those exponents are related as n=ν(D_{F}-D_{B}), where D_{F} and D_{B} are the fractal dimensions of the bulk and the border from which diffusing particles come, respectively. This relation is supported by accurate numerical estimates in two SCs and in two generalized Menger sponges (MSs), in which we performed simulations of single-particle random walks (RWs) with a rigid impermeable border and of a diffusive infiltration model in which that border is permanently filled with diffusing particles. This study includes one MS whose external border is also fractal. The exponent relation is also consistent with the recent simulational and experimental results on fluid infiltration in SCs, and explains the approximate quadratic dependence of n on D_{F} in these fractals. We also show that the mean-square displacement of single-particle RWs has log-periodic oscillations, whose periods are similar for fractals with the same scaling factor in the generator (even with different embedding dimensions), which is consistent with the discrete scale invariance scenario. The roughness of a diffusion front defined in the infiltration problem also shows this type of oscillation, which is enhanced in fractals with narrow channels between large lacunas.
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Affiliation(s)
- F D A Aarão Reis
- Instituto de Física, Universidade Federal Fluminense, Avenida Litorânea s/n, 24210-340 Niterói, Rio de Janeiro, Brazil
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16
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Akimoto T, Barkai E, Saito K. Universal Fluctuations of Single-Particle Diffusivity in a Quenched Environment. PHYSICAL REVIEW LETTERS 2016; 117:180602. [PMID: 27835019 DOI: 10.1103/physrevlett.117.180602] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2016] [Indexed: 06/06/2023]
Abstract
Local diffusion coefficients in disordered materials such as living cells are highly heterogeneous. We consider finite systems with quenched disorder in order to investigate the effects of sample disorder fluctuations and confinement on single-particle diffusivity. While the system is ergodic in a single disorder realization, the time-averaged mean square displacement depends crucially on the disorder; i.e., the system is ergodic but non-self-averaging. Moreover, we show that the disorder average of the time-averaged mean square displacement decreases with the system size. We find a universal distribution for diffusivity in the sense that the shape of the distribution does not depend on the dimension. Quantifying the degree of the non-self-averaging effect, we show that fluctuations of single-particle diffusivity far exceed the corresponding annealed theory and also find confinement effects. The relevance for experimental situations is also discussed.
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Affiliation(s)
- Takuma Akimoto
- Graduate School of Science and Technology, Keio University, Yokohama 223-8522, Japan
| | - Eli Barkai
- Department of Physics, Bar Ilan University, Ramat-Gan 52900, Israel
| | - Keiji Saito
- Department of Physics, Keio University, Yokohama 223-8522, Japan
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17
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Akimoto T, Yamamoto E. Distributional behaviors of time-averaged observables in the Langevin equation with fluctuating diffusivity: Normal diffusion but anomalous fluctuations. Phys Rev E 2016; 93:062109. [PMID: 27415210 DOI: 10.1103/physreve.93.062109] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2016] [Indexed: 06/06/2023]
Abstract
We consider the Langevin equation with dichotomously fluctuating diffusivity, where the diffusion coefficient changes dichotomously over time, in order to study fluctuations of time-averaged observables in temporally heterogeneous diffusion processes. We find that the time-averaged mean-square displacement (TMSD) can be represented by the occupation time of a state in the asymptotic limit of the measurement time and hence occupation time statistics is a powerful tool for calculating the TMSD in the model. We show that the TMSD increases linearly with time (normal diffusion) but the time-averaged diffusion coefficients are intrinsically random when the mean sojourn time for one of the states diverges, i.e., intrinsic nonequilibrium processes. Thus, we find that temporally heterogeneous environments provide anomalous fluctuations of time-averaged diffusivity, which have relevance to large fluctuations of the diffusion coefficients obtained by single-particle-tracking trajectories in experiments.
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Affiliation(s)
- Takuma Akimoto
- Department of Mechanical Engineering, Keio University, Yokohama 223-8522, Japan
| | - Eiji Yamamoto
- Department of Mechanical Engineering, Keio University, Yokohama 223-8522, Japan
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18
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Dentz M, Russian A, Gouze P. Self-averaging and ergodicity of subdiffusion in quenched random media. Phys Rev E 2016; 93:010101. [PMID: 26871007 DOI: 10.1103/physreve.93.010101] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2015] [Indexed: 06/05/2023]
Abstract
We study the self-averaging properties and ergodicity of the mean square displacement m(t) of particles diffusing in d dimensional quenched random environments which give rise to subdiffusive average motion. These properties are investigated in terms of the sample to sample fluctuations as measured by the variance of m(t). We find that m(t) is not self-averaging for d<2 due to the inefficient disorder sampling by random motion in a single realization. For d≥2 in contrast, the efficient sampling of heterogeneity by the space random walk renders m(t) self-averaging and thus ergodic. This is remarkable because the average particle motion in d>2 obeys a CTRW, which by itself displays weak ergodicity breaking. This paradox is resolved by the observation that the CTRW as an average model does not reflect the disorder sampling by random motion in a single medium realization.
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Affiliation(s)
- Marco Dentz
- Spanish National Research Council (IDAEA-CSIC), 08034 Barcelona, Spain
| | - Anna Russian
- Géosciences, Université de Montpellier 2, CNRS, Montpellier, France
| | - Philippe Gouze
- Géosciences, Université de Montpellier 2, CNRS, Montpellier, France
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19
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Akimoto T, Seki K. Transition from distributional to ergodic behavior in an inhomogeneous diffusion process: Method revealing an unknown surface diffusivity. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:022114. [PMID: 26382351 DOI: 10.1103/physreve.92.022114] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2014] [Indexed: 06/05/2023]
Abstract
Diffusion of molecules in cells plays an important role in providing a biological reaction on the surface by finding a target on the membrane surface. The water retardation (slow diffusion) near the target assists the searching molecules to recognize the target. Here, we consider effects of the surface diffusivity on the effective diffusivity, where diffusion on the surface is slower than that in bulk. We show that the ensemble-averaged mean-square displacements increase linearly with time when the desorption rate from the surface is finite, which is valid even when the diffusion on the surface is anomalous (subdiffusion). Moreover, this slow diffusion on the surface affects the fluctuations of the time-averaged mean-square displacements (TAMSDs). We find that fluctuations of the TAMSDs remain large when the measurement time is smaller than a characteristic time, and decays according to an increase of the measurement time for a relatively large measurement time. Therefore, we find a transition from nonergodic (distributional) to ergodic diffusivity in a target search process. Moreover, this fluctuation analysis provides a method to estimate an unknown surface diffusivity.
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Affiliation(s)
- Takuma Akimoto
- Department of Mechanical Engineering, Keio University, Yokohama, 223-8522, Japan
| | - Kazuhiko Seki
- Nanosystem Research Institute, AIST, Tsukuba, 305-8565, Japan
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20
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Gmachowski L. Fractal model of anomalous diffusion. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2015; 44:613-21. [PMID: 26129728 PMCID: PMC4628625 DOI: 10.1007/s00249-015-1054-5] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/15/2015] [Revised: 04/24/2015] [Accepted: 06/09/2015] [Indexed: 12/17/2022]
Abstract
An equation of motion is derived from fractal analysis of the Brownian particle trajectory in which the asymptotic fractal dimension of the trajectory has a required value. The formula makes it possible to calculate the time dependence of the mean square displacement for both short and long periods when the molecule diffuses anomalously. The anomalous diffusion which occurs after long periods is characterized by two variables, the transport coefficient and the anomalous diffusion exponent. An explicit formula is derived for the transport coefficient, which is related to the diffusion constant, as dependent on the Brownian step time, and the anomalous diffusion exponent. The model makes it possible to deduce anomalous diffusion properties from experimental data obtained even for short time periods and to estimate the transport coefficient in systems for which the diffusion behavior has been investigated. The results were confirmed for both sub and super-diffusion.
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Affiliation(s)
- Lech Gmachowski
- Institute of Chemistry, Warsaw University of Technology, 09-400, Plock, Poland.
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