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Lenzi EK, Rosseto MP, Gryczak DW, de Souza PA, Lenzi MK, Ribeiro HV, Zola RS. Diffusion in comb-structured surfaces coupled to bulk processes. CHAOS (WOODBURY, N.Y.) 2025; 35:023130. [PMID: 39928749 DOI: 10.1063/5.0247994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2024] [Accepted: 01/27/2025] [Indexed: 02/12/2025]
Abstract
From the analytical perspective, we investigate the diffusion processes that arise from a system composed of a surface with a backbone structure coupled to the bulk via the boundary conditions. The problem is formulated in terms of diffusion equations with nonlocal terms, which can be used to model different processes, such as sorption-desorption and reactions on the surface. For the backbone structure, we consider the comb model, which imposes constraints on the diffusion processes in different directions on the surface. The results reveal a broad class of behaviors that can be connected to anomalous diffusion.
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Affiliation(s)
- E K Lenzi
- Departamento de Física, Universidade Estadual de Ponta Grossa, Ponta Grossa, Paraná 84030-900, Brazil
- Departamento de Física, Universidade Estadual de Maringá, Maringá, Paraná 87020-900, Brazil
| | - M P Rosseto
- Departamento de Física, Universidade Estadual de Maringá, Maringá, Paraná 87020-900, Brazil
| | - D W Gryczak
- Independent Researcher, Irati 84507-012, PR, Brazil
| | - P A de Souza
- Departamento de Engenharia Química, Universidade Federal do Paraná, Rua Coronel Francisco Heráclito dos Santos 210, Curitiba 82590-300 PR, Brazil
| | - M K Lenzi
- Departamento de Engenharia Química, Universidade Federal do Paraná, Rua Coronel Francisco Heráclito dos Santos 210, Curitiba 82590-300 PR, Brazil
| | - H V Ribeiro
- Departamento de Física, Universidade Estadual de Maringá, Maringá, Paraná 87020-900, Brazil
| | - R S Zola
- Departamento de Física, Universidade Estadual de Maringá, Maringá, Paraná 87020-900, Brazil
- Departamento de Física, Universidade Tecnológica Federal do Paraná-Campus de Apucarana, Apucarana, Paraná 86812-460, Brazil
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Trajanovski P, Jolakoski P, Zelenkovski K, Iomin A, Kocarev L, Sandev T. Ornstein-Uhlenbeck process and generalizations: Particle dynamics under comb constraints and stochastic resetting. Phys Rev E 2023; 107:054129. [PMID: 37328979 DOI: 10.1103/physreve.107.054129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Accepted: 05/01/2023] [Indexed: 06/18/2023]
Abstract
The Ornstein-Uhlenbeck process is interpreted as Brownian motion in a harmonic potential. This Gaussian Markov process has a bounded variance and admits a stationary probability distribution, in contrast to the standard Brownian motion. It also tends to a drift towards its mean function, and such a process is called mean reverting. Two examples of the generalized Ornstein-Uhlenbeck process are considered. In the first one, we study the Ornstein-Uhlenbeck process on a comb model, as an example of the harmonically bounded random motion in the topologically constrained geometry. The main dynamical characteristics (as the first and the second moments) and the probability density function are studied in the framework of both the Langevin stochastic equation and the Fokker-Planck equation. The second example is devoted to the study of the effects of stochastic resetting on the Ornstein-Uhlenbeck process, including stochastic resetting in the comb geometry. Here the nonequilibrium stationary state is the main question in task, where the two divergent forces, namely, the resetting and the drift towards the mean, lead to compelling results in the cases of both the Ornstein-Uhlenbeck process with resetting and its generalization on the two-dimensional comb structure.
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Affiliation(s)
- Pece Trajanovski
- Research Center for Computer Science and Information Technologies, Macedonian Academy of Sciences and Arts, Bul. Krste Misirkov 2, 1000 Skopje, Macedonia
| | - Petar Jolakoski
- Research Center for Computer Science and Information Technologies, Macedonian Academy of Sciences and Arts, Bul. Krste Misirkov 2, 1000 Skopje, Macedonia
| | - Kiril Zelenkovski
- Research Center for Computer Science and Information Technologies, Macedonian Academy of Sciences and Arts, Bul. Krste Misirkov 2, 1000 Skopje, Macedonia
| | - Alexander Iomin
- Department of Physics, Technion, Haifa 32000, Israel
- Max Planck Institute for the Physics of Complex Systems, D-01187 Dresden, Germany
| | - Ljupco Kocarev
- Research Center for Computer Science and Information Technologies, Macedonian Academy of Sciences and Arts, Bul. Krste Misirkov 2, 1000 Skopje, Macedonia
- Faculty of Computer Science and Engineering, Ss. Cyril and Methodius University, PO Box 393, 1000 Skopje, Macedonia
| | - Trifce Sandev
- Research Center for Computer Science and Information Technologies, Macedonian Academy of Sciences and Arts, Bul. Krste Misirkov 2, 1000 Skopje, Macedonia
- Institute of Physics & Astronomy, University of Potsdam, D-14776 Potsdam-Golm, Germany
- Institute of Physics, Faculty of Natural Sciences and Mathematics, Ss. Cyril and Methodius University, Arhimedova 3, 1000 Skopje, Macedonia
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Khalili Golmankhaneh A, Kamal Ali K, Yilmazer R, Welch K. Electrical circuits involving fractal time. CHAOS (WOODBURY, N.Y.) 2021; 31:033132. [PMID: 33810716 DOI: 10.1063/5.0042813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2021] [Accepted: 02/25/2021] [Indexed: 06/12/2023]
Abstract
In this paper, we develop fractal calculus by defining improper fractal integrals and their convergence and divergence conditions with related tests and by providing examples. Using fractal calculus that provides a new mathematical model, we investigate the effect of fractal time on the evolution of the physical system, for example, electrical circuits. In these physical models, we change the dimension of the fractal time; as a result, the order of the fractal derivative changes; therefore, the corresponding solutions also change. We obtain several analytical solutions that are non-differentiable in the sense of ordinary calculus by means of the local fractal Laplace transformation. In addition, we perform a comparative analysis by solving the governing fractal equations in the electrical circuits and using their smooth solutions, and we also show that when α=1, we get the same results as in the standard version.
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Affiliation(s)
| | - Karmina Kamal Ali
- Faculty of Science, Department of Mathematics, University of Zakho, Zakho 42002, Iraq
| | - Resat Yilmazer
- Faculty of Science, Department of Mathematics, Firat University, Elazig 23119, Turkey
| | - Kerri Welch
- School of Undergraduate Studies, California Institute of Integral Studies, San Francisco, California 94103, USA
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Abstract
This review addresses issues of various drift–diffusion and inhomogeneous advection problems with and without resetting on comblike structures. Both a Brownian diffusion search with drift and an inhomogeneous advection search on the comb structures are analyzed. The analytical results are verified by numerical simulations in terms of coupled Langevin equations for the comb structure. The subordination approach is one of the main technical methods used here, and we demonstrated how it can be effective in the study of various random search problems with and without resetting.
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Suleiman K, Liu C, Zhang X, Wang E, Ma L, Zheng L. Anomalous diffusion on Archimedean spiral structure with Cattaneo flux model. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.114256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Abstract
A random walk on a two dimensional square in R2 space with a hidden absorbing fractal set Fμ is considered. This search-like problem is treated in the framework of a diffusion–reaction equation, when an absorbing term is included inside a Fokker–Planck equation as a reaction term. This macroscopic approach for the 2D transport in the R2 space corresponds to the comb geometry, when the random walk consists of 1D movements in the x and y directions, respectively, as a direct-Cartesian product of the 1D movements. The main value in task is the first arrival time distribution (FATD) to sink points of the fractal set, where travelling particles are absorbed. Analytical expression for the FATD is obtained in the subdiffusive regime for both the fractal set of sinks and for a single sink.
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Liang Y, Sandev T, Lenzi EK. Reaction and ultraslow diffusion on comb structures. Phys Rev E 2020; 101:042119. [PMID: 32422761 DOI: 10.1103/physreve.101.042119] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Accepted: 03/20/2020] [Indexed: 11/07/2022]
Abstract
A two-dimensional (2D) comb model is proposed to characterize reaction-ultraslow diffusion of tracers both in backbones (x direction) and side branches (y direction) of the comblike structure with two memory kernels. The memory kernels include Dirac delta, power-law, and logarithmic and inverse Mittag-Leffler (ML) functions, which can also be considered as the structural functions in the time structural derivative. Based on the comb model, ultraslow diffusion on a fractal comb structure is also investigated by considering spatial fractal geometry of the backbone volume. The mean squared displacement (MSD) and the corresponding concentration of the tracers, i.e., the solution of the comb model, are derived for reactive and conservative tracers. For a fractal structure of backbones, the derived MSDs and corresponding solutions depend on the backbone's fractal dimension. The proposed 2D comb model with different kernel functions is feasible to describe ultraslow diffusion in both the backbone and side branches of the comblike structure.
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Affiliation(s)
- Yingjie Liang
- Key Laboratory of Coastal Disaster and Defence of Ministry of Education, College of Mechanics and Materials, Hohai University, Nanjing, Jiangsu 211100, China
| | - Trifce Sandev
- Research Center for Computer Science and Information Technologies, Macedonian Academy of Sciences and Arts, Bulevar Krste Misirkov 2, 1000 Skopje, Macedonia; Institute of Physics & Astronomy, University of Potsdam, D-14776 Potsdam-Golm, Germany; and Institute of Physics, Faculty of Natural Sciences and Mathematics, Saints Cyril and Methodius University, Arhimedova 3, 1000 Skopje, Macedonia
| | - Ervin Kaminski Lenzi
- Departmento de Fisica, Universidade Estadual de Ponta Grossa, Avenida Carlos Cavalcanti 4748, 84030-900 Ponta Grossa, Paraná, Brazil
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Tateishi AA, Ribeiro HV, Sandev T, Petreska I, Lenzi EK. Quenched and annealed disorder mechanisms in comb models with fractional operators. Phys Rev E 2020; 101:022135. [PMID: 32168676 DOI: 10.1103/physreve.101.022135] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Accepted: 02/11/2020] [Indexed: 06/10/2023]
Abstract
Recent experimental findings on anomalous diffusion have demanded novel models that combine annealed (temporal) and quenched (spatial or static) disorder mechanisms. The comb model is a simplified description of diffusion on percolation clusters, where the comblike structure mimics quenched disorder mechanisms and yields a subdiffusive regime. Here we extend the comb model to simultaneously account for quenched and annealed disorder mechanisms. To do so, we replace usual derivatives in the comb diffusion equation by different fractional time-derivative operators and the conventional comblike structure by a generalized fractal structure. Our hybrid comb models thus represent a diffusion where different comblike structures describe different quenched disorder mechanisms, and the fractional operators account for various annealed disorder mechanisms. We find exact solutions for the diffusion propagator and mean square displacement in terms of different memory kernels used for defining the fractional operators. Among other findings, we show that these models describe crossovers from subdiffusion to Brownian or confined diffusions, situations emerging in empirical results. These results reveal the critical role of interactions between geometrical restrictions and memory effects on modeling anomalous diffusion.
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Affiliation(s)
- A A Tateishi
- Departamento de Física, Universidade Tecnologica Federal de Pato Branco, Pato Branco, Paraná 85503-390, Brazil
| | - H V Ribeiro
- Departamento de Física, Universidade Estadual de Maringá, Maringá, Paraná 87020-900, Brazil
| | - T Sandev
- Research Center for Computer Science and Information Technologies, Macedonian Academy of Sciences and Arts, Bul. Krste Misirkov 2, 1000 Skopje, Macedonia
- Institute of Physics & Astronomy, University of Potsdam, D-14776 Potsdam-Golm, Germany
- Institute of Physics, Faculty of Natural Sciences and Mathematics, Ss Cyril and Methodius University, Arhimedova 3, 1000 Skopje, Macedonia
| | - I Petreska
- Institute of Physics, Faculty of Natural Sciences and Mathematics, Ss Cyril and Methodius University, Arhimedova 3, 1000 Skopje, Macedonia
| | - E K Lenzi
- Departamento de Física, Universidade Estadual de Ponta Grossa, Av. Carlos Cavalcanti 4748, 84030-900 Ponta Grossa, Paraná, Brazil
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Abstract
In this manuscript, integrals and derivatives of functions on Cantor tartan spaces are defined. The generalisation of standard calculus, which is called F η -calculus, is utilised to obtain definitions of the integral and derivative of functions on Cantor tartan spaces of different dimensions. Differential equations involving the new derivatives are solved. Illustrative examples are presented to check the details.
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Zhokh A, Trypolskyi A, Strizhak P. Relationship between the anomalous diffusion and the fractal dimension of the environment. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.02.015] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Abstract
We present exact analytical results for properties of anomalous diffusion on a fractal mesh. The fractal mesh structure is a direct product of two fractal sets, one belonging to a main branch of backbones, the other to the side branches of fingers. Both fractal sets are constructed on the entire (infinite) y and x axes. We suggest a special algorithm in order to construct such sets out of standard Cantor sets embedded in the unit interval. The transport properties of the fractal mesh are studied, in particular, subdiffusion along the backbones is obtained with the dispersion relation 〈x^{2}(t)〉≃t^{β}, where the transport exponent β<1 is determined by the fractal dimensions of both backbone and fingers. Superdiffusion with β>1 has been observed as well when the environment is controlled by means of a memory kernel.
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Affiliation(s)
- Trifce Sandev
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Strasse 38, 01187 Dresden, Germany
- Radiation Safety Directorate, Partizanski odredi 143, P.O. Box 22, 1020 Skopje, Macedonia
- Research Center for Computer Science and Information Technologies, Macedonian Academy of Sciences and Arts, Bul. Krste Misirkov 2, 1000 Skopje, Macedonia
| | - Alexander Iomin
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Strasse 38, 01187 Dresden, Germany
- Department of Physics, Technion, Haifa 32000, Israel
| | - Holger Kantz
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Strasse 38, 01187 Dresden, Germany
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Time fractional Cattaneo-Christov anomalous diffusion in comb frame with finite length of fingers. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.03.034] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Yuste SB, Abad E, Baumgaertner A. Anomalous diffusion and dynamics of fluorescence recovery after photobleaching in the random-comb model. Phys Rev E 2016; 94:012118. [PMID: 27575088 DOI: 10.1103/physreve.94.012118] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2016] [Indexed: 06/06/2023]
Abstract
We address the problem of diffusion on a comb whose teeth display varying lengths. Specifically, the length ℓ of each tooth is drawn from a probability distribution displaying power law behavior at large ℓ,P(ℓ)∼ℓ^{-(1+α)} (α>0). To start with, we focus on the computation of the anomalous diffusion coefficient for the subdiffusive motion along the backbone. This quantity is subsequently used as an input to compute concentration recovery curves mimicking fluorescence recovery after photobleaching experiments in comblike geometries such as spiny dendrites. Our method is based on the mean-field description provided by the well-tested continuous time random-walk approach for the random-comb model, and the obtained analytical result for the diffusion coefficient is confirmed by numerical simulations of a random walk with finite steps in time and space along the backbone and the teeth. We subsequently incorporate retardation effects arising from binding-unbinding kinetics into our model and obtain a scaling law characterizing the corresponding change in the diffusion coefficient. Finally, we show that recovery curves obtained with the help of the analytical expression for the anomalous diffusion coefficient cannot be fitted perfectly by a model based on scaled Brownian motion, i.e., a standard diffusion equation with a time-dependent diffusion coefficient. However, differences between the exact curves and such fits are small, thereby providing justification for the practical use of models relying on scaled Brownian motion as a fitting procedure for recovery curves arising from particle diffusion in comblike systems.
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Affiliation(s)
- S B Yuste
- Departamento de Física and Instituto de Computación Científica Avanzada (ICCAEX), Universidad de Extremadura, E-06071 Badajoz, Spain
| | - E Abad
- Departamento de Física Aplicada and Instituto de Computación Científica Avanzada (ICCAEX), Centro Universitario de Mérida, Universidad de Extremadura, E-06800 Mérida, Spain
| | - A Baumgaertner
- Departamento de Física and Instituto de Computación Científica Avanzada (ICCAEX), Universidad de Extremadura, E-06071 Badajoz, Spain
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