1
|
Peng J, Agliari E. Exact results for the first-passage properties in a class of fractal networks. CHAOS (WOODBURY, N.Y.) 2019; 29:023105. [PMID: 30823739 DOI: 10.1063/1.5080481] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2018] [Accepted: 01/13/2019] [Indexed: 06/09/2023]
Abstract
In this work, we consider a class of recursively grown fractal networks Gn(t) whose topology is controlled by two integer parameters, t and n. We first analyse the structural properties of Gn(t) (including fractal dimension, modularity, and clustering coefficient), and then we move to its transport properties. The latter are studied in terms of first-passage quantities (including the mean trapping time, the global mean first-passage time, and Kemeny's constant), and we highlight that their asymptotic behavior is controlled by the network's size and diameter. Remarkably, if we tune n (or, analogously, t) while keeping the network size fixed, as n increases (t decreases) the network gets more and more clustered and modular while its diameter is reduced, implying, ultimately, a better transport performance. The connection between this class of networks and models for polymer architectures is also discussed.
Collapse
Affiliation(s)
- Junhao Peng
- School of Math and Information Science, Guangzhou University, Guangzhou 510006, China
| | - Elena Agliari
- Department of Mathematics, Sapienza Università di Roma, 00185 Rome, Italy
| |
Collapse
|
2
|
Jurjiu A, Gomes Maia Júnior D, Galiceanu M. Relaxation dynamics of generalized scale-free polymer networks. Sci Rep 2018; 8:3731. [PMID: 29487316 PMCID: PMC5829225 DOI: 10.1038/s41598-018-21968-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2017] [Accepted: 02/13/2018] [Indexed: 11/25/2022] Open
Abstract
We focus on treelike generalized scale-free polymer networks, whose geometries depend on a parameter, γ, that controls their connectivity and on two modularity parameters: the minimum allowed degree, Kmin, and the maximum allowed degree, Kmax. We monitor the influence of these parameters on the static and dynamic properties of the achieved generalized scale-free polymer networks. The relaxation dynamics is studied in the framework of generalized Gaussian structures model by employing the Rouse-type approach. The dynamical quantities on which we focus are the average monomer displacement under external forces and the mechanical relaxation moduli (storage and loss modulus), while for the static and structure properties of these networks we concentrate on the eigenvalue spectrum, diameter, and degree correlations. Depending on the values of network’s parameters we were able to switch between distinct hyperbranched structures: networks with more linearlike segments or with a predominant star or dendrimerlike topology. We have observed a stronger influence on Kmin than on Kmax. In the intermediate time (frequency) domain, all physical quantities obey power-laws for polymer networks with γ = 2.5 and Kmin = 2 and we prove additionally that for networks with γ ≥ 2.5 new regions with constant slope emerge by a proper choice of Kmin. Remarkably, we show that for certain values of the parameter set one may obtain self-similar networks.
Collapse
Affiliation(s)
- Aurel Jurjiu
- Department of Condensed Matter Physics and Advanced Technologies, Faculty of Physics, Babes-Bolyai University, Street Mihail Kogalniceanu 1, 400084, Cluj-Napoca, Romania.
| | | | - Mircea Galiceanu
- Departamento de Física, Universidade Federal do Amazonas, 69077-000, Manaus, Brazil.
| |
Collapse
|
3
|
Agliari E, Cassi D, Cattivelli L, Sartori F. Two-particle problem in comblike structures. Phys Rev E 2016; 93:052111. [PMID: 27300834 DOI: 10.1103/physreve.93.052111] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2015] [Indexed: 06/06/2023]
Abstract
Encounters between walkers performing a random motion on an appropriate structure can describe a wide variety of natural phenomena ranging from pharmacokinetics to foraging. On homogeneous structures the asymptotic encounter probability between two walkers is (qualitatively) independent of whether both walkers are moving or one is kept fixed. On infinite comblike structures this is no longer the case and here we deepen the mechanisms underlying the emergence of a finite probability that two random walkers will never meet, while one single random walker is certain to visit any site. In particular, we introduce an analytical approach to address this problem and even more general problems such as the case of two walkers with different diffusivity, particles walking on a finite comb and on arbitrary bundled structures, possibly in the presence of loops. Our investigations are both analytical and numerical and highlight that, in general, the outcome of a reaction involving two reactants on a comblike architecture can strongly differ according to whether both reactants are moving (no matter their relative diffusivities) or only one is moving and according to the density of shortcuts among the branches.
Collapse
Affiliation(s)
- Elena Agliari
- Dipartimento di Matematica, Sapienza Università di Roma, P. le Aldo Moro 5, 00185 Roma, Italy
| | - Davide Cassi
- Dipartimento di Fisica e Scienze della Terra, Parco Area delle Scienze 7/A, 43124 Parma, Italy
| | - Luca Cattivelli
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
| | - Fabio Sartori
- Max Planck Institute for Brain Research, Max-von-Laue-Straße 4, 60438 Frankfurt am Main, Germany
| |
Collapse
|
4
|
Liu H, Lin Y, Dolgushev M, Zhang Z. Dynamics of comb-of-comb networks. Phys Rev E 2016; 93:032502. [PMID: 27078400 DOI: 10.1103/physreve.93.032502] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2015] [Indexed: 11/07/2022]
Abstract
The dynamics of complex networks, a current hot topic in many scientific fields, is often coded through the corresponding Laplacian matrix. The spectrum of this matrix carries the main features of the networks' dynamics. Here we consider the deterministic networks which can be viewed as "comb-of-comb" iterative structures. For their Laplacian spectra we find analytical equations involving Chebyshev polynomials whose properties allow one to analyze the spectra in deep. Here, in particular, we find that in the infinite size limit the corresponding spectral dimension goes as d(s) → 2. The d(s) leaves its fingerprint on many dynamical processes, as we exemplarily show by considering the dynamical properties of polymer networks, including single monomer displacement under a constant force, mechanical relaxation, and fluorescence depolarization.
Collapse
Affiliation(s)
- Hongxiao Liu
- School of Computer Science, Fudan University, Shanghai 200433, China.,Shanghai Key Laboratory of Intelligent Information Processing, Fudan University, Shanghai 200433, China
| | - Yuan Lin
- School of Computer Science, Fudan University, Shanghai 200433, China.,Shanghai Key Laboratory of Intelligent Information Processing, Fudan University, Shanghai 200433, China
| | - Maxim Dolgushev
- Institute of Physics, University of Freiburg, Hermann-Herder-Str. 3, D-79104 Freiburg, Germany.,Institut Charles Sadron, Université de Strasbourg and CNRS, 23 rue du Loess, 67034 Strasbourg Cedex, France
| | - Zhongzhi Zhang
- School of Computer Science, Fudan University, Shanghai 200433, China.,Shanghai Key Laboratory of Intelligent Information Processing, Fudan University, Shanghai 200433, China
| |
Collapse
|
5
|
Méndez V, Iomin A, Campos D, Horsthemke W. Mesoscopic description of random walks on combs. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 92:062112. [PMID: 26764637 DOI: 10.1103/physreve.92.062112] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2015] [Indexed: 06/05/2023]
Abstract
Combs are a simple caricature of various types of natural branched structures, which belong to the category of loopless graphs and consist of a backbone and branches. We study continuous time random walks on combs and present a generic method to obtain their transport properties. The random walk along the branches may be biased, and we account for the effect of the branches by renormalizing the waiting time probability distribution function for the motion along the backbone. We analyze the overall diffusion properties along the backbone and find normal diffusion, anomalous diffusion, and stochastic localization (diffusion failure), respectively, depending on the characteristics of the continuous time random walk along the branches, and compare our analytical results with stochastic simulations.
Collapse
Affiliation(s)
- Vicenç Méndez
- Grup de Física Estadística, Departament de Física, Facultat de Ciències, Edifici Cc, Universitat Autònoma de Barcelona, 08193 Bellaterra (Barcelona), Spain
| | | | - Daniel Campos
- Grup de Física Estadística, Departament de Física, Facultat de Ciències, Edifici Cc, Universitat Autònoma de Barcelona, 08193 Bellaterra (Barcelona), Spain
| | - Werner Horsthemke
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275-0314, USA
| |
Collapse
|
6
|
Bénichou O, Illien P, Oshanin G, Sarracino A, Voituriez R. Diffusion and Subdiffusion of Interacting Particles on Comblike Structures. PHYSICAL REVIEW LETTERS 2015; 115:220601. [PMID: 26650285 DOI: 10.1103/physrevlett.115.220601] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2015] [Indexed: 06/05/2023]
Abstract
We study the dynamics of a tracer particle (TP) on a comb lattice populated by randomly moving hard-core particles in the dense limit. We first consider the case where the TP is constrained to move on the backbone of the comb only. In the limit of high density of the particles, we present exact analytical results for the cumulants of the TP position, showing a subdiffusive behavior ∼t^{3/4}. At longer times, a second regime is observed where standard diffusion is recovered, with a surprising nonanalytical dependence of the diffusion coefficient on the particle density. When the TP is allowed to visit the teeth of the comb, based on a mean-field-like continuous time random walk description, we unveil a rich and complex scenario with several successive subdiffusive regimes, resulting from the coupling between the geometrical constraints of the comb lattice and particle interactions. In this case, remarkably, the presence of hard-core interactions asymptotically speeds up the TP motion along the backbone of the structure.
Collapse
Affiliation(s)
- O Bénichou
- Sorbonne Universités, UPMC Université Paris 06, UMR 7600, LPTMC, F-75005 Paris, France and CNRS, UMR 7600, Laboratoire de Physique Théorique de la Matière Condensée, F-75005 Paris, France
| | - P Illien
- Sorbonne Universités, UPMC Université Paris 06, UMR 7600, LPTMC, F-75005 Paris, France and CNRS, UMR 7600, Laboratoire de Physique Théorique de la Matière Condensée, F-75005 Paris, France
| | - G Oshanin
- Sorbonne Universités, UPMC Université Paris 06, UMR 7600, LPTMC, F-75005 Paris, France and CNRS, UMR 7600, Laboratoire de Physique Théorique de la Matière Condensée, F-75005 Paris, France
| | - A Sarracino
- Sorbonne Universités, UPMC Université Paris 06, UMR 7600, LPTMC, F-75005 Paris, France and CNRS, UMR 7600, Laboratoire de Physique Théorique de la Matière Condensée, F-75005 Paris, France
| | - R Voituriez
- Sorbonne Universités, UPMC Université Paris 06, UMR 7600, LPTMC, F-75005 Paris, France and CNRS, UMR 7600, Laboratoire de Physique Théorique de la Matière Condensée, F-75005 Paris, France
| |
Collapse
|
7
|
Peng J, Agliari E, Zhang Z. Exact calculations of first-passage properties on the pseudofractal scale-free web. CHAOS (WOODBURY, N.Y.) 2015; 25:073118. [PMID: 26232969 DOI: 10.1063/1.4927085] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
In this paper, we consider discrete time random walks on the pseudofractal scale-free web (PSFW) and we study analytically the related first passage properties. First, we classify the nodes of the PSFW into different levels and propose a method to derive the generation function of the first passage probability from an arbitrary starting node to the absorbing domain, which is located at one or more nodes of low-level (i.e., nodes with large degree). Then, we calculate exactly the first passage probability, the survival probability, the mean, and the variance of first passage time by using the generating functions as a tool. Finally, for some illustrative examples corresponding to given choices of starting node and absorbing domain, we derive exact and explicit results for such first passage properties. The method we propose can as well address the cases where the absorbing domain is located at one or more nodes of high-level on the PSFW, and it can also be used to calculate the first passage properties on other networks with self-similar structure, such as (u, v) flowers and recursive scale-free trees.
Collapse
Affiliation(s)
- Junhao Peng
- School of Math and Information Science, Guangzhou University, Guangzhou 510006, China
| | - Elena Agliari
- Department of Mathematics, Sapienza University, Rome 00185, Italy
| | - Zhongzhi Zhang
- Shanghai Key Laboratory of Intelligent Information Processing, School of Computer Science, Fudan University, Shanghai 200433, China
| |
Collapse
|