1
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Hunter I, Norton MM, Chen B, Simonetti C, Moustaka ME, Touboul J, Fraden S. Pattern formation in a four-ring reaction-diffusion network with heterogeneity. Phys Rev E 2022; 105:024310. [PMID: 35291089 DOI: 10.1103/physreve.105.024310] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 01/28/2022] [Indexed: 11/07/2022]
Abstract
In networks of nonlinear oscillators, symmetries place hard constraints on the system that can be exploited to predict universal dynamical features and steady states, providing a rare generic organizing principle for far-from-equilibrium systems. However, the robustness of this class of theories to symmetry-disrupting imperfections is untested in free-running (i.e., non-computer-controlled) systems. Here, we develop a model experimental reaction-diffusion network of chemical oscillators to test applications of the theory of dynamical systems with symmeries in the context of self-organizing systems relevant to biology and soft robotics. The network is a ring of four microreactors containing the oscillatory Belousov-Zhabotinsky reaction coupled to nearest neighbors via diffusion. Assuming homogeneity across the oscillators, theory predicts four categories of stable spatiotemporal phase-locked periodic states and four categories of invariant manifolds that guide and structure transitions between phase-locked states. In our experiments, we observed that three of the four phase-locked states were displaced from their idealized positions and, in the ensemble of measurements, appeared as clusters of different shapes and sizes, and that one of the predicted states was absent. We also observed the predicted symmetry-derived synchronous clustered transients that occur when the dynamical trajectories coincide with invariant manifolds. Quantitative agreement between experiment and numerical simulations is found by accounting for the small amount of experimentally determined heterogeneity in intrinsic frequency. We further elucidate how different patterns of heterogeneity impact each attractor differently through a bifurcation analysis. We show that examining bifurcations along invariant manifolds provides a general framework for developing intuition about how chemical-specific dynamics interact with topology in the presence of heterogeneity that can be applied to other oscillators in other topologies.
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Affiliation(s)
- Ian Hunter
- Brandeis University Physics, Waltham, Massachusetts 02453, USA
| | - Michael M Norton
- Center for Neural Engineering, Department of Engineering Science and Mechanics, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Bolun Chen
- Volen National Center for Complex Systems, Brandeis University, Waltham, Massachusetts 02453, USA.,Department of Physics, Boston University, Boston Massachusetts 02215, USA
| | - Chris Simonetti
- Brandeis University Physics, Waltham, Massachusetts 02453, USA
| | | | - Jonathan Touboul
- Volen National Center for Complex Systems, Brandeis University, Waltham, Massachusetts 02453, USA.,Brandeis University Mathematics Department, Waltham, Massachusetts 02453, USA
| | - Seth Fraden
- Brandeis University Physics, Waltham, Massachusetts 02453, USA
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2
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Mallphanov IL, Vanag VK. Chemical micro-oscillators based on the Belousov–Zhabotinsky reaction. RUSSIAN CHEMICAL REVIEWS 2021. [DOI: 10.1070/rcr5009] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Abstract
The results of studies on the development of micro-oscillators (MOs) based on the Belousov –Zhabotinsky (BZ) oscillatory chemical reaction are integrated and systematized. The mechanisms of the BZ reaction and the methods of immobilization of the catalyst of the BZ reaction in micro-volumes are briefly discussed. Methods for creating BZ MOs based on water microdroplets in the oil phase and organic and inorganic polymer microspheres are considered. Methods of control and management of the dynamics of BZ MO networks are described, including methods of MO synchronization. The prospects for the design of neural networks of MOs with intelligent-like behaviour are outlined. Such networks present a new area of nonlinear chemistry, including, in particular, the creation of a chemical ‘computer’.
The bibliography includes 250 references.
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3
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Mersing D, Tyler SA, Ponboonjaroenchai B, Tinsley MR, Showalter K. Novel modes of synchronization in star networks of coupled chemical oscillators. CHAOS (WOODBURY, N.Y.) 2021; 31:093127. [PMID: 34598462 DOI: 10.1063/5.0058403] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2021] [Accepted: 08/30/2021] [Indexed: 06/13/2023]
Abstract
Photochemically coupled micro-oscillators are studied experimentally and computationally in star networks to investigate the modes and mechanisms of synchronization. The micro-oscillators are catalyst-loaded beads that are placed in catalyst-free Belousov-Zhabotinsky (BZ) solutions. The properties of the photochemical coupling between the oscillators are determined by the composition of the BZ reaction mixtures, and both excitatory coupling and inhibitory coupling are studied. Synchronization of peripheral oscillators coupled through a hub oscillator is exhibited at coupling strengths leading to novel modes of synchronization of the hub with the peripheral oscillators. A theoretical analysis provides insights into the mechanism of the synchronization. The heterogeneous peripheral oscillators have different phase velocities that give rise to a phase divergence; however, the perturbation from the hub acts to realign the phases by delaying the faster oscillators more than the slower oscillators.
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Affiliation(s)
- David Mersing
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045, USA
| | - Shannyn A Tyler
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045, USA
| | - Benjamas Ponboonjaroenchai
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045, USA
| | - Mark R Tinsley
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045, USA
| | - Kenneth Showalter
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045, USA
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4
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Mallphanov IL, Vanag VK. Distance dependent types of coupling of chemical micro-oscillators immersed in a water-in-oil microemulsion. Phys Chem Chem Phys 2021; 23:9130-9138. [DOI: 10.1039/d1cp00758k] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A system of micro-spheres immersed in a water-in-oil microemulsion (ME) is studied both theoretically and experimentally.
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Affiliation(s)
- Ilya L. Mallphanov
- Centre for Nonlinear Chemistry
- Immanuel Kant Baltic Federal University
- Kaliningrad 236016
- Russia
| | - Vladimir K. Vanag
- Centre for Nonlinear Chemistry
- Immanuel Kant Baltic Federal University
- Kaliningrad 236016
- Russia
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5
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Paul S, Pal K, Ray DS. Parametric instability-induced synchronization in chemical oscillations and spatiotemporal patterns. Phys Rev E 2020; 102:052209. [PMID: 33327123 DOI: 10.1103/physreve.102.052209] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2020] [Accepted: 10/25/2020] [Indexed: 11/07/2022]
Abstract
We consider a model reaction-diffusion system with two coupled layers in which one of the components in a layer is parametrically driven by a periodic force. On perturbation of a homogeneous stable steady state, the system exhibits parametric instability inducing synchronization in temporal oscillation at half the forcing frequency in absence of diffusion and spatiotemporal patterns in presence of diffusion, when strength of parametric forcing and the strength of coupling are kept above their critical thresholds. We have formulated a general scheme to derive analytically the critical thresholds and dispersion relation to locate the unstable spatial modes lying between the tilted Arnold tongue in the amplitude-frequency plot. Full numerical simulations on Gierer-Meinhardt activator-inhibitor model corroborate our theoretical analysis on parametric instability-induced antiphase synchronization in chemical oscillation and spatiotemporal pattern formation, between the two layers.
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Affiliation(s)
- Shibashis Paul
- Indian Association for the Cultivation of Science, Jadavpur, Kolkata-700032, India
| | - Krishnendu Pal
- Indian Association for the Cultivation of Science, Jadavpur, Kolkata-700032, India
| | - Deb Shankar Ray
- Indian Association for the Cultivation of Science, Jadavpur, Kolkata-700032, India
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6
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Wang Y, Wang L, Fan H, Wang X. Cluster synchronization in networked nonidentical chaotic oscillators. CHAOS (WOODBURY, N.Y.) 2019; 29:093118. [PMID: 31575156 DOI: 10.1063/1.5097242] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2019] [Accepted: 08/26/2019] [Indexed: 06/10/2023]
Abstract
In exploring oscillator synchronization, a general observation is that as the oscillators become nonidentical, e.g., introducing parameter mismatch among the oscillators, the propensity for synchronization will be deteriorated. Yet in realistic systems, parameter mismatch is unavoidable and even worse in some circumstances, the oscillators might follow different types of dynamics. Considering the significance of synchronization to the functioning of many realistic systems, it is natural to ask the following question: Can synchronization be achieved in networked oscillators of clearly different parameters or dynamics? Here, by the model of networked chaotic oscillators, we are able to demonstrate and argue that, despite the presence of parameter mismatch (or different dynamics), stable synchronization can still be achieved on symmetric complex networks. Specifically, we find that when the oscillators are configured on the network in such a way that the symmetric nodes have similar parameters (or follow the same type of dynamics), cluster synchronization can be generated. The stabilities of the cluster synchronization states are analyzed by the method of symmetry-based stability analysis, with the theoretical predictions in good agreement with the numerical results. Our study sheds light on the interplay between symmetry and cluster synchronization in complex networks and give insights into the functionalities of realistic systems where nonidentical nonlinear oscillators are presented and cluster synchronization is crucial.
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Affiliation(s)
- Yafeng Wang
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710062, China
| | - Liang Wang
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710062, China
| | - Huawei Fan
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710062, China
| | - Xingang Wang
- School of Physics and Information Technology, Shaanxi Normal University, Xi'an 710062, China
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7
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León I, Pazó D. Phase reduction beyond the first order: The case of the mean-field complex Ginzburg-Landau equation. Phys Rev E 2019; 100:012211. [PMID: 31499758 DOI: 10.1103/physreve.100.012211] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2019] [Indexed: 05/01/2023]
Abstract
Phase reduction is a powerful technique that makes possible to describe the dynamics of a weakly perturbed limit-cycle oscillator in terms of its phase. For ensembles of oscillators, a classical example of phase reduction is the derivation of the Kuramoto model from the mean-field complex Ginzburg-Landau equation (MF-CGLE). Still, the Kuramoto model is a first-order phase approximation that displays either full synchronization or incoherence, but none of the nontrivial dynamics of the MF-CGLE. This fact calls for an expansion beyond the first order in the coupling constant. We develop an isochron-based scheme to obtain the second-order phase approximation, which reproduces the weak-coupling dynamics of the MF-CGLE. The practicality of our method is evidenced by extending the calculation up to third order. Each new term of the power-series expansion contributes with additional higher-order multibody (i.e., nonpairwise) interactions. This points to intricate multibody phase interactions as the source of pure collective chaos in the MF-CGLE at moderate coupling.
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Affiliation(s)
- Iván León
- Instituto de Física de Cantabria (IFCA), CSIC-Universidad de Cantabria, 39005 Santander, Spain
| | - Diego Pazó
- Instituto de Física de Cantabria (IFCA), CSIC-Universidad de Cantabria, 39005 Santander, Spain
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8
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Fengler E, Totz JF, Kaluza P, Engel H. Directed adaptation of synchronization levels in oscillator communities. CHAOS (WOODBURY, N.Y.) 2019; 29:063101. [PMID: 31266320 DOI: 10.1063/1.5094490] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2019] [Accepted: 05/13/2019] [Indexed: 06/09/2023]
Abstract
We present an adaptive control scheme that realizes desired dynamics of an oscillator network with a given number of communities by adjusting the coupling weights between oscillators accordingly. The scheme allows, for example, to simultaneously establish different pregiven synchronization levels in the particular communities as well as phase relationships between them. We apply the method in numerical simulations with all-to-all and randomly coupled networks. Moreover, we provide an experimental proof of concept validating our numerical findings in a network of optically coupled photosensitive chemical micro-oscillators.
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Affiliation(s)
- Enrico Fengler
- Technische Universität Berlin, Institut für Theoretische Physik, Hardenbergstraße 36, EW 7-1, 10623 Berlin, Germany
| | - Jan Frederik Totz
- Technische Universität Berlin, Institut für Theoretische Physik, Hardenbergstraße 36, EW 7-1, 10623 Berlin, Germany
| | - Pablo Kaluza
- National Scientific and Technical Research Council & Faculty of Exact and Natural Sciences, National University of Cuyo, Padre Contreras 1300, 5500 Mendoza, Argentina
| | - Harald Engel
- Technische Universität Berlin, Institut für Theoretische Physik, Hardenbergstraße 36, EW 7-1, 10623 Berlin, Germany
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9
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Hart JD, Zhang Y, Roy R, Motter AE. Topological Control of Synchronization Patterns: Trading Symmetry for Stability. PHYSICAL REVIEW LETTERS 2019; 122:058301. [PMID: 30822003 DOI: 10.1103/physrevlett.122.058301] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Revised: 01/08/2019] [Indexed: 06/09/2023]
Abstract
Symmetries are ubiquitous in network systems and have profound impacts on the observable dynamics. At the most fundamental level, many synchronization patterns are induced by underlying network symmetry, and a high degree of symmetry is believed to enhance the stability of identical synchronization. Yet, here we show that the synchronizability of almost any symmetry cluster in a network of identical nodes can be enhanced precisely by breaking its structural symmetry. This counterintuitive effect holds for generic node dynamics and arbitrary network structure and is, moreover, robust against noise and imperfections typical of real systems, which we demonstrate by implementing a state-of-the-art optoelectronic experiment. These results lead to new possibilities for the topological control of synchronization patterns, which we substantiate by presenting an algorithm that optimizes the structure of individual clusters under various constraints.
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Affiliation(s)
- Joseph D Hart
- Institute for Research in Electronics and Applied Physics, University of Maryland, College Park, Maryland 20742, USA
- Department of Physics, University of Maryland, College Park, Maryland 20742, USA
| | - Yuanzhao Zhang
- Department of Physics and Astronomy, Northwestern University, Evanston, Illinois 60208, USA
| | - Rajarshi Roy
- Institute for Research in Electronics and Applied Physics, University of Maryland, College Park, Maryland 20742, USA
- Department of Physics, University of Maryland, College Park, Maryland 20742, USA
- Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742, USA
| | - Adilson E Motter
- Department of Physics and Astronomy, Northwestern University, Evanston, Illinois 60208, USA
- Northwestern Institute on Complex Systems, Northwestern University, Evanston, Illinois 60208, USA
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10
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Wilson D, Faramarzi S, Moehlis J, Tinsley MR, Showalter K. Synchronization of heterogeneous oscillator populations in response to weak and strong coupling. CHAOS (WOODBURY, N.Y.) 2018; 28:123114. [PMID: 30599520 DOI: 10.1063/1.5049475] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2018] [Accepted: 11/19/2018] [Indexed: 06/09/2023]
Abstract
Synchronous behavior of a population of chemical oscillators is analyzed in the presence of both weak and strong coupling. In each case, we derive upper bounds on the critical coupling strength which are valid for arbitrary populations of nonlinear, heterogeneous oscillators. For weak perturbations, infinitesimal phase response curves are used to characterize the response to coupling, and graph theoretical techniques are used to predict synchronization. In the strongly perturbed case, we observe a phase dependent perturbation threshold required to elicit an immediate spike and use this behavior for our analytical predictions. Resulting upper bounds on the critical coupling strength agree well with our experimental observations and numerical simulations. Furthermore, important system parameters which determine synchronization are different in the weak and strong coupling regimes. Our results point to new strategies by which limit cycle oscillators can be studied when the applied perturbations become strong enough to immediately reset the phase.
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Affiliation(s)
- Dan Wilson
- Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, Tennessee 37996, USA
| | - Sadegh Faramarzi
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045, USA
| | - Jeff Moehlis
- Department of Mechanical Engineering, University of California, Santa Barbara, California 93106, USA
| | - Mark R Tinsley
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045, USA
| | - Kenneth Showalter
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045, USA
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11
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Röhm A, Lüdge K, Schneider I. Bistability in two simple symmetrically coupled oscillators with symmetry-broken amplitude- and phase-locking. CHAOS (WOODBURY, N.Y.) 2018; 28:063114. [PMID: 29960415 DOI: 10.1063/1.5018262] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
In the model system of two instantaneously and symmetrically coupled identical Stuart-Landau oscillators, we demonstrate that there exist stable solutions with symmetry-broken amplitude- and phase-locking. These states are characterized by a non-trivial fixed phase or amplitude relationship between both oscillators, while simultaneously maintaining perfectly harmonic oscillations of the same frequency. While some of the surrounding bifurcations have been previously described, we present the first detailed analytical and numerical description of these states and present analytically and numerically how they are embedded in the bifurcation structure of the system, arising both from the in-phase and the anti-phase solutions, as well as through a saddle-node bifurcation. The dependence of both the amplitude and the phase on parameters can be expressed explicitly with analytic formulas. As opposed to the previous reports, we find that these symmetry-broken states are stable, which can even be shown analytically. As an example of symmetry-breaking solutions in a simple and symmetric system, these states have potential applications as bistable states for switches in a wide array of coupled oscillatory systems.
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Affiliation(s)
- André Röhm
- Institut für Theoretische Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - Kathy Lüdge
- Institut für Theoretische Physik, Technische Universität Berlin, 10623 Berlin, Germany
| | - Isabelle Schneider
- Institut für Mathematik, Freie Universität Berlin, 14195 Berlin, Germany
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12
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Falcke M, Friedhoff VN. The stretch to stray on time: Resonant length of random walks in a transient. CHAOS (WOODBURY, N.Y.) 2018; 28:053117. [PMID: 29857685 DOI: 10.1063/1.5023164] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
First-passage times in random walks have a vast number of diverse applications in physics, chemistry, biology, and finance. In general, environmental conditions for a stochastic process are not constant on the time scale of the average first-passage time or control might be applied to reduce noise. We investigate moments of the first-passage time distribution under an exponential transient describing relaxation of environmental conditions. We solve the Laplace-transformed (generalized) master equation analytically using a novel method that is applicable to general state schemes. The first-passage time from one end to the other of a linear chain of states is our application for the solutions. The dependence of its average on the relaxation rate obeys a power law for slow transients. The exponent ν depends on the chain length N like ν=-N/(N+1) to leading order. Slow transients substantially reduce the noise of first-passage times expressed as the coefficient of variation (CV), even if the average first-passage time is much longer than the transient. The CV has a pronounced minimum for some lengths, which we call resonant lengths. These results also suggest a simple and efficient noise control strategy and are closely related to the timing of repetitive excitations, coherence resonance, and information transmission by noisy excitable systems. A resonant number of steps from the inhibited state to the excitation threshold and slow recovery from negative feedback provide optimal timing noise reduction and information transmission.
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Affiliation(s)
- Martin Falcke
- Max Delbrück Center for Molecular Medicine, Robert Rössle Str. 10, 13125 Berlin, Germany
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13
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Yengi D, Tinsley MR, Showalter K. Autonomous cycling between excitatory and inhibitory coupling in photosensitive chemical oscillators. CHAOS (WOODBURY, N.Y.) 2018; 28:045114. [PMID: 31906667 DOI: 10.1063/1.5018388] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Photochemically coupled Belousov-Zhabotinsky micro-oscillators are studied in experiments and simulations. The photosensitive oscillators exhibit excitatory or inhibitory coupling depending on the surrounding reaction mixture composition, which can be systematically varied. In-phase or out-of-phase synchronization is observed with predominantly excitatory or inhibitory coupling, respectively, and complex frequency cycling between excitatory and inhibitory coupling is found between these extremes. The dynamical behavior is characterized in terms of the corresponding phase response curves, and a map representation of the dynamics is presented.
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Affiliation(s)
- Desmond Yengi
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045, USA
| | - Mark R Tinsley
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045, USA
| | - Kenneth Showalter
- C. Eugene Bennett Department of Chemistry, West Virginia University, Morgantown, West Virginia 26506-6045, USA
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14
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Zheng M, Li L, Peng H, Xiao J, Yang Y, Zhang Y, Zhao H. Globally fixed-time synchronization of coupled neutral-type neural network with mixed time-varying delays. PLoS One 2018; 13:e0191473. [PMID: 29370248 PMCID: PMC5784957 DOI: 10.1371/journal.pone.0191473] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2017] [Accepted: 01/07/2018] [Indexed: 11/18/2022] Open
Abstract
This paper mainly studies the globally fixed-time synchronization of a class of coupled neutral-type neural networks with mixed time-varying delays via discontinuous feedback controllers. Compared with the traditional neutral-type neural network model, the model in this paper is more general. A class of general discontinuous feedback controllers are designed. With the help of the definition of fixed-time synchronization, the upper right-hand derivative and a defined simple Lyapunov function, some easily verifiable and extensible synchronization criteria are derived to guarantee the fixed-time synchronization between the drive and response systems. Finally, two numerical simulations are given to verify the correctness of the results.
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Affiliation(s)
- Mingwen Zheng
- School of Science, Beijing University of Posts and Telecommunications, Beijing 100876, China
- School of Mathematics and Statistics, Shandong University of Technology, Zibo 255000, China
| | - Lixiang Li
- Information Security Center, State Key Laboratory of Networking and Switching Technology, National Engineering Laboratory for Disaster Backup and Recovery, Beijing University of Posts and Telecommunications, Beijing 100876, China
| | - Haipeng Peng
- Information Security Center, State Key Laboratory of Networking and Switching Technology, National Engineering Laboratory for Disaster Backup and Recovery, Beijing University of Posts and Telecommunications, Beijing 100876, China
| | - Jinghua Xiao
- School of Science, Beijing University of Posts and Telecommunications, Beijing 100876, China
- State Key Laboratory of Information Photonics and Optical Communications, Beijing University of Posts and Telecommunications, Beijing 100876, China
| | - Yixian Yang
- Information Security Center, State Key Laboratory of Networking and Switching Technology, National Engineering Laboratory for Disaster Backup and Recovery, Beijing University of Posts and Telecommunications, Beijing 100876, China
| | - Yanping Zhang
- School of Mathematics and Statistics, Shandong University of Technology, Zibo 255000, China
| | - Hui Zhao
- Shandong Provincial Key Laboratory of Network Based Intelligent Computing, School of Information Science and Engineering, University of Jinan, Jinan 250022, China
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15
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Zou C, Wei X, Zhang Q. Visual synchronization of two 3-variable Lotka–Volterra oscillators based on DNA strand displacement. RSC Adv 2018; 8:20941-20951. [PMID: 35542339 PMCID: PMC9080848 DOI: 10.1039/c8ra01393d] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2018] [Accepted: 05/21/2018] [Indexed: 01/30/2023] Open
Abstract
DNA strand displacement as a theoretic foundation is helpful in constructing reaction networks and DNA circuits.
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Affiliation(s)
- Chengye Zou
- School of Computer Science and Engineering
- Dalian University of Technology
- Dalian 116024
- China
| | - Xiaopeng Wei
- School of Computer Science and Engineering
- Dalian University of Technology
- Dalian 116024
- China
| | - Qiang Zhang
- School of Computer Science and Engineering
- Dalian University of Technology
- Dalian 116024
- China
- Key Laboratory of Advanced and Intelligent Computing
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16
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Hart JD, Schmadel DC, Murphy TE, Roy R. Experiments with arbitrary networks in time-multiplexed delay systems. CHAOS (WOODBURY, N.Y.) 2017; 27:121103. [PMID: 29289048 DOI: 10.1063/1.5016047] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We report a new experimental approach using an optoelectronic feedback loop to investigate the dynamics of oscillators coupled on large complex networks with arbitrary topology. Our implementation is based on a single optoelectronic feedback loop with time delays. We use the space-time interpretation of systems with time delay to create large networks of coupled maps. Others have performed similar experiments using high-pass filters to implement the coupling; this restricts the network topology to the coupling of only a few nearest neighbors. In our experiment, the time delays and coupling are implemented on a field-programmable gate array, allowing the creation of networks with arbitrary coupling topology. This system has many advantages: the network nodes are truly identical, the network is easily reconfigurable, and the network dynamics occur at high speeds. We use this system to study cluster synchronization and chimera states in both small and large networks of different topologies.
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Affiliation(s)
- Joseph D Hart
- Institute for Research in Electronics and Applied Physics, University of Maryland, College Park, Maryland 20742, USA
| | - Don C Schmadel
- Institute for Research in Electronics and Applied Physics, University of Maryland, College Park, Maryland 20742, USA
| | - Thomas E Murphy
- Institute for Research in Electronics and Applied Physics, University of Maryland, College Park, Maryland 20742, USA
| | - Rajarshi Roy
- Institute for Research in Electronics and Applied Physics, University of Maryland, College Park, Maryland 20742, USA
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17
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Gentili PL, Giubila MS, Heron BM. Processing Binary and Fuzzy Logic by Chaotic Time Series Generated by a Hydrodynamic Photochemical Oscillator. Chemphyschem 2017; 18:1831-1841. [DOI: 10.1002/cphc.201601443] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2016] [Revised: 02/02/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Pier Luigi Gentili
- Department of Chemistry, Biology and Biotechnology; University of Perugia; 06123 Perugia Italy
| | - Maria Sole Giubila
- Department of Chemistry, Biology and Biotechnology; University of Perugia; 06123 Perugia Italy
| | - B. Mark Heron
- Department of Chemical and Biological Sciences, School of Applied Science; University of Huddersfield; Queensgate Huddersfield HD1 3DH UK
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18
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Peron TKD, Kurths J, Rodrigues FA, Schimansky-Geier L, Sonnenschein B. Traveling phase waves in asymmetric networks of noisy chaotic attractors. Phys Rev E 2016; 94:042210. [PMID: 27841493 DOI: 10.1103/physreve.94.042210] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2016] [Indexed: 06/06/2023]
Abstract
We explore identical Rössler systems organized into two equally sized groups, among which differing positive and negative in- and out-coupling strengths are allowed. With this asymmetric coupling, we analyze patterns in the phase dynamics that coexist with chaotic amplitudes. We specifically investigate traveling phase waves where the oscillators settle on a new rhythm different from their own. We show that these waves are possible even without coherence in the phase angles. It is further demonstrated that the emergence of these incoherent traveling waves depends on the type of coupling, not on the individual dynamics of the Rössler systems. Together with the study of noise effects, our results suggest a promising new avenue toward the interplay of chaotic, noisy, coherent, and incoherent collective dynamics.
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Affiliation(s)
- Thomas K Dm Peron
- Instituto de Física de São Carlos, Universidade de São Paulo, CP 369, 13560-970 São Carlos, São Paulo, Brazil
- Potsdam Institute for Climate Impact Research (PIK), 14473 Potsdam, Germany
| | - Jürgen Kurths
- Potsdam Institute for Climate Impact Research (PIK), 14473 Potsdam, Germany
- Department of Physics, Humboldt-Universität zu Berlin, Newtonstrasse 15, 12489 Berlin, Germany
| | - Francisco A Rodrigues
- Instituto de Ciências Matemáticas e de Computação, Universidade de São Paulo, CP 668, 13560-970 São Carlos, São Paulo, Brazil
| | - Lutz Schimansky-Geier
- Department of Physics, Humboldt-Universität zu Berlin, Newtonstrasse 15, 12489 Berlin, Germany
| | - Bernard Sonnenschein
- Department of Physics, Humboldt-Universität zu Berlin, Newtonstrasse 15, 12489 Berlin, Germany
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Hart JD, Bansal K, Murphy TE, Roy R. Experimental observation of chimera and cluster states in a minimal globally coupled network. CHAOS (WOODBURY, N.Y.) 2016; 26:094801. [PMID: 27781456 DOI: 10.1063/1.4953662] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
A "chimera state" is a dynamical pattern that occurs in a network of coupled identical oscillators when the symmetry of the oscillator population is broken into synchronous and asynchronous parts. We report the experimental observation of chimera and cluster states in a network of four globally coupled chaotic opto-electronic oscillators. This is the minimal network that can support chimera states, and our study provides new insight into the fundamental mechanisms underlying their formation. We use a unified approach to determine the stability of all the observed partially synchronous patterns, highlighting the close relationship between chimera and cluster states as belonging to the broader phenomenon of partial synchronization. Our approach is general in terms of network size and connectivity. We also find that chimera states often appear in regions of multistability between global, cluster, and desynchronized states.
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Affiliation(s)
- Joseph D Hart
- Institute for Research in Electronics and Applied Physics, University of Maryland, College Park, Maryland 20742, USA
| | - Kanika Bansal
- Department of Mathematics, University at Buffalo, SUNY Buffalo, New York 14260, USA
| | - Thomas E Murphy
- Institute for Research in Electronics and Applied Physics, University of Maryland, College Park, Maryland 20742, USA
| | - Rajarshi Roy
- Institute for Research in Electronics and Applied Physics, University of Maryland, College Park, Maryland 20742, USA
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Guo D, Fu YQ, Zheng B. Synchronization of Coupled Oscillators on a Two-Dimensional Plane. Chemphyschem 2016; 17:2355-9. [PMID: 27124217 DOI: 10.1002/cphc.201600293] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2016] [Indexed: 01/11/2023]
Abstract
The effect of the transfer rate of signal molecules on coupled chemical oscillators arranged on a two-dimensional plane was systematically investigated in this paper. A microreactor equipped with a surface acoustic wave (SAW) mixer was applied to adjust the transfer rate of the signal molecules in the microreactor. The SAW mixer with adjustable input powers provided a simple means to generate different mixing rates in the microreactor. A robust synchronization of the oscillators was found at an input radio frequency power of 20 dBm, with which the chemical waves were initiated at a fixed site of the oscillator system. With increasing input power, the frequency of the chemical waves was increased, which agreed well with the prediction given by the time-delayed phase oscillator model. Results from the finite element simulation agreed well with the experimental results.
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Affiliation(s)
- Dameng Guo
- Department of Chemistry, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong
| | - Yong Qing Fu
- Department of Physics & Electrical Engineering, Faculty of Engineering and Environment, Northumbria University, Newcastle Upon Tyne, NE1 8ST, UK
| | - Bo Zheng
- Department of Chemistry, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong.
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Martens S. Note: From reaction-diffusion systems to confined Brownian motion. J Chem Phys 2016; 145:016101. [PMID: 27394126 DOI: 10.1063/1.4955492] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- S Martens
- Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstraße 36, 10623 Berlin, Germany
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