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Shao Y, Dahmen D, Recanatesi S, Shea-Brown E, Ostojic S. Identifying the impact of local connectivity patterns on dynamics in excitatory-inhibitory networks. ARXIV 2025:arXiv:2411.06802v3. [PMID: 39650608 PMCID: PMC11623704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 12/11/2024]
Abstract
Networks of excitatory and inhibitory (EI) neurons form a canonical circuit in the brain. Seminal theoretical results on dynamics of such networks are based on the assumption that synaptic strengths depend on the type of neurons they connect, but are otherwise statistically independent. Recent synaptic physiology datasets however highlight the prominence of specific connectivity patterns that go well beyond what is expected from independent connections. While decades of influential research have demonstrated the strong role of the basic EI cell type structure, to which extent additional connectivity features influence dynamics remains to be fully determined. Here we examine the effects of pairwise connectivity motifs on the linear dynamics in EI networks using an analytical framework that approximates the connectivity in terms of low-rank structures. This low-rank approximation is based on a mathematical derivation of the dominant eigenvalues of the connectivity matrix and predicts the impact on responses to external inputs of connectivity motifs and their interactions with cell-type structure. Our results reveal that a particular pattern of connectivity, chain motifs, have a much stronger impact on dominant eigenmodes than other pairwise motifs. An overrepresentation of chain motifs induces a strong positive eigenvalue in inhibition-dominated networks and generates a potential instability that requires revisiting the classical excitation-inhibition balance criteria. Examining effects of external inputs, we show that chain motifs can on their own induce paradoxical responses where an increased input to inhibitory neurons leads to a decrease in their activity due to the recurrent feedback. These findings have direct implications for the interpretation of experiments in which responses to optogenetic perturbations are measured and used to infer the dynamical regime of cortical circuits.
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2
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Baron JW. Path-integral approach to sparse non-Hermitian random matrices. Phys Rev E 2025; 111:034217. [PMID: 40247566 DOI: 10.1103/physreve.111.034217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2024] [Accepted: 03/06/2025] [Indexed: 04/19/2025]
Abstract
The theory of large random matrices has proved an invaluable tool for the study of systems with disordered interactions in many quite disparate research areas. Widely applicable results, such as the celebrated elliptic law for dense random matrices, allow one to deduce the statistical properties of the interactions in a complex dynamical system that permit stability. However, such simple and universal results have so far proved difficult to come by in the case of sparse random matrices. Here, we perform an expansion in the inverse connectivity, and thus derive general modified versions of the classic elliptic and semicircle laws, taking into account the sparse correction. This is accomplished using a dynamical approach, which maps the hermitized resolvent of a random matrix onto the response functions of a linear dynamical system. The response functions are then evaluated using a path integral formalism, enabling one to construct Feynman diagrams, which facilitate the perturbative analysis. Additionally, in order to demonstrate the broad utility of the path integral framework, we derive a generic non-Hermitian generalization of the Marchenko-Pastur law, and we also show how one can handle non-negligible higher-order statistics (i.e., non-Gaussian statistics) in dense ensembles.
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Affiliation(s)
- Joseph W Baron
- Sorbonne Université, Université PSL, Laboratoire de Physique de l'Ecole Normale Supèrieure, ENS, CNRS, Université de Paris, F-75005 Paris, France
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Chen C, Wang XW, Liu YY. Stability of Ecological Systems: A Theoretical Review. PHYSICS REPORTS 2024; 1088:1-41. [PMID: 40017996 PMCID: PMC11864804 DOI: 10.1016/j.physrep.2024.08.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/01/2025]
Abstract
The stability of ecological systems is a fundamental concept in ecology, which offers profound insights into species coexistence, biodiversity, and community persistence. In this article, we provide a systematic and comprehensive review on the theoretical frameworks for analyzing the stability of ecological systems. Notably, we survey various stability notions, including linear stability, sign stability, diagonal stability, D-stability, total stability, sector stability, and structural stability. For each of these stability notions, we examine necessary or sufficient conditions for achieving such stability and demonstrate the intricate interplay of these conditions on the network structures of ecological systems. We further discuss the stability of ecological systems with higher-order interactions.
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Affiliation(s)
- Can Chen
- School of Data Science and Society and Department of Mathematics, University of North Carolina at Chapel Hill, Chapel Hill, 27599, NC, USA
- Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, 02115, MA, USA
| | - Xu-Wen Wang
- Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, 02115, MA, USA
| | - Yang-Yu Liu
- Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, 02115, MA, USA
- Carl R. Woese Institute for Genomic Biology, Center for Artificial Intelligence and Modeling, University of Illinois at Urbana-Champaign, Champaign, 61801, IL, USA
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Poley L, Galla T, Baron JW. Eigenvalue spectra of finely structured random matrices. Phys Rev E 2024; 109:064301. [PMID: 39020998 DOI: 10.1103/physreve.109.064301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2023] [Accepted: 04/12/2024] [Indexed: 07/20/2024]
Abstract
Random matrix theory allows for the deduction of stability criteria for complex systems using only a summary knowledge of the statistics of the interactions between components. As such, results like the well-known elliptical law are applicable in a myriad of different contexts. However, it is often assumed that all components of the complex system in question are statistically equivalent, which is unrealistic in many applications. Here we introduce the concept of a finely structured random matrix. These are random matrices with element-specific statistics, which can be used to model systems in which the individual components are statistically distinct. By supposing that the degree of "fine structure" in the matrix is small, we arrive at a succinct "modified" elliptical law. We demonstrate the direct applicability of our results to the niche and cascade models in theoretical ecology, as well as a model of a neural network, and a directed network with arbitrary degree distribution. The simple closed form of our central results allow us to draw broad qualitative conclusions about the effect of fine structure on stability.
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Baron JW, Jewell TJ, Ryder C, Galla T. Breakdown of Random-Matrix Universality in Persistent Lotka-Volterra Communities. PHYSICAL REVIEW LETTERS 2023; 130:137401. [PMID: 37067312 DOI: 10.1103/physrevlett.130.137401] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 06/17/2022] [Accepted: 03/06/2023] [Indexed: 06/19/2023]
Abstract
The eigenvalue spectrum of a random matrix often only depends on the first and second moments of its elements, but not on the specific distribution from which they are drawn. The validity of this universality principle is often assumed without proof in applications. In this Letter, we offer a pertinent counterexample in the context of the generalized Lotka-Volterra equations. Using dynamic mean-field theory, we derive the statistics of the interactions between species in an evolved ecological community. We then show that the full statistics of these interactions, beyond those of a Gaussian ensemble, are required to correctly predict the eigenvalue spectrum and therefore stability. Consequently, the universality principle fails in this system. We thus show that the eigenvalue spectra of random matrices can be used to deduce the stability of "feasible" ecological communities, but only if the emergent non-Gaussian statistics of the interactions between species are taken into account.
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Affiliation(s)
- Joseph W Baron
- Instituto de Física Interdisciplinar y Sistemas Complejos IFISC (CSIC-UIB), 07122 Palma de Mallorca, Spain
| | - Thomas Jun Jewell
- Department of Physics and Astronomy, School of Natural Sciences, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Christopher Ryder
- Department of Physics and Astronomy, School of Natural Sciences, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Tobias Galla
- Instituto de Física Interdisciplinar y Sistemas Complejos IFISC (CSIC-UIB), 07122 Palma de Mallorca, Spain
- Department of Physics and Astronomy, School of Natural Sciences, The University of Manchester, Manchester M13 9PL, United Kingdom
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Poley L, Baron JW, Galla T. Generalized Lotka-Volterra model with hierarchical interactions. Phys Rev E 2023; 107:024313. [PMID: 36932524 DOI: 10.1103/physreve.107.024313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Accepted: 12/21/2022] [Indexed: 03/19/2023]
Abstract
In the analysis of complex ecosystems it is common to use random interaction coefficients, which are often assumed to be such that all species are statistically equivalent. In this work we relax this assumption by imposing hierarchical interspecies interactions. These are incorporated into a generalized Lotka-Volterra dynamical system. In a hierarchical community species benefit more, on average, from interactions with species further below them in the hierarchy than from interactions with those above. Using dynamic mean-field theory, we demonstrate that a strong hierarchical structure is stabilizing, but that it reduces the number of species in the surviving community, as well as their abundances. Additionally, we show that increased heterogeneity in the variances of the interaction coefficients across positions in the hierarchy is destabilizing. We also comment on the structure of the surviving community and demonstrate that the abundance and probability of survival of a species are dependent on its position in the hierarchy.
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Affiliation(s)
- Lyle Poley
- Department of Physics and Astronomy, School of Natural Science, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Joseph W Baron
- Instituto de Física Interdisciplinar y Sistemas Complejos, CSIC, UIB, 07122 Palma de Mallorca, Spain
| | - Tobias Galla
- Department of Physics and Astronomy, School of Natural Science, The University of Manchester, Manchester M13 9PL, United Kingdom.,Instituto de Física Interdisciplinar y Sistemas Complejos, CSIC, UIB, 07122 Palma de Mallorca, Spain
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Shao Y, Ostojic S. Relating local connectivity and global dynamics in recurrent excitatory-inhibitory networks. PLoS Comput Biol 2023; 19:e1010855. [PMID: 36689488 PMCID: PMC9894562 DOI: 10.1371/journal.pcbi.1010855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Revised: 02/02/2023] [Accepted: 01/06/2023] [Indexed: 01/24/2023] Open
Abstract
How the connectivity of cortical networks determines the neural dynamics and the resulting computations is one of the key questions in neuroscience. Previous works have pursued two complementary approaches to quantify the structure in connectivity. One approach starts from the perspective of biological experiments where only the local statistics of connectivity motifs between small groups of neurons are accessible. Another approach is based instead on the perspective of artificial neural networks where the global connectivity matrix is known, and in particular its low-rank structure can be used to determine the resulting low-dimensional dynamics. A direct relationship between these two approaches is however currently missing. Specifically, it remains to be clarified how local connectivity statistics and the global low-rank connectivity structure are inter-related and shape the low-dimensional activity. To bridge this gap, here we develop a method for mapping local connectivity statistics onto an approximate global low-rank structure. Our method rests on approximating the global connectivity matrix using dominant eigenvectors, which we compute using perturbation theory for random matrices. We demonstrate that multi-population networks defined from local connectivity statistics for which the central limit theorem holds can be approximated by low-rank connectivity with Gaussian-mixture statistics. We specifically apply this method to excitatory-inhibitory networks with reciprocal motifs, and show that it yields reliable predictions for both the low-dimensional dynamics, and statistics of population activity. Importantly, it analytically accounts for the activity heterogeneity of individual neurons in specific realizations of local connectivity. Altogether, our approach allows us to disentangle the effects of mean connectivity and reciprocal motifs on the global recurrent feedback, and provides an intuitive picture of how local connectivity shapes global network dynamics.
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Affiliation(s)
- Yuxiu Shao
- Laboratoire de Neurosciences Cognitives et Computationnelles, INSERM U960, Ecole Normale Superieure—PSL Research University, Paris, France
| | - Srdjan Ostojic
- Laboratoire de Neurosciences Cognitives et Computationnelles, INSERM U960, Ecole Normale Superieure—PSL Research University, Paris, France
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Evaluating the statistical similarity of neural network activity and connectivity via eigenvector angles. Biosystems 2023; 223:104813. [PMID: 36460172 DOI: 10.1016/j.biosystems.2022.104813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 11/15/2022] [Accepted: 11/15/2022] [Indexed: 12/02/2022]
Abstract
Neural systems are networks, and strategic comparisons between multiple networks are a prevalent task in many research scenarios. In this study, we construct a statistical test for the comparison of matrices representing pairwise aspects of neural networks, in particular, the correlation between spiking activity and connectivity. The "eigenangle test" quantifies the similarity of two matrices by the angles between their ranked eigenvectors. We calibrate the behavior of the test for use with correlation matrices using stochastic models of correlated spiking activity and demonstrate how it compares to classical two-sample tests, such as the Kolmogorov-Smirnov distance, in the sense that it is able to evaluate also structural aspects of pairwise measures. Furthermore, the principle of the eigenangle test can be applied to compare the similarity of adjacency matrices of certain types of networks. Thus, the approach can be used to quantitatively explore the relationship between connectivity and activity with the same metric. By applying the eigenangle test to the comparison of connectivity matrices and correlation matrices of a random balanced network model before and after a specific synaptic rewiring intervention, we gauge the influence of connectivity features on the correlated activity. Potential applications of the eigenangle test include simulation experiments, model validation, and data analysis.
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Baron JW. Eigenvalue spectra and stability of directed complex networks. Phys Rev E 2022; 106:064302. [PMID: 36671075 DOI: 10.1103/physreve.106.064302] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Accepted: 10/30/2022] [Indexed: 12/12/2022]
Abstract
Quantifying the eigenvalue spectra of large random matrices allows one to understand the factors that contribute to the stability of dynamical systems with many interacting components. This work explores the effect that the interaction network between components has on the eigenvalue spectrum. We build on previous results, which usually only take into account the mean degree of the network, by allowing for nontrivial network degree heterogeneity. We derive closed-form expressions for the eigenvalue spectrum of the adjacency matrix of a general weighted and directed network. Using these results, which are valid for any large well-connected complex network, we then derive compact formulas for the corrections (due to nonzero network heterogeneity) to well-known results in random matrix theory. Specifically, we derive modified versions of the Wigner semicircle law, the Girko circle law, and the elliptic law and any outlier eigenvalues. We also derive a surprisingly neat analytical expression for the eigenvalue density of a directed Barabási-Albert network. We are thus able to deduce that network heterogeneity is mostly a destabilizing influence in complex dynamical systems.
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Affiliation(s)
- Joseph W Baron
- Instituto de Física Interdisciplinar y Sistemas Complejos IFISC (CSIC-UIB), 07122 Palma de Mallorca, Spain
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Baron JW, Jewell TJ, Ryder C, Galla T. Eigenvalues of Random Matrices with Generalized Correlations: A Path Integral Approach. PHYSICAL REVIEW LETTERS 2022; 128:120601. [PMID: 35394295 DOI: 10.1103/physrevlett.128.120601] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Revised: 01/10/2022] [Accepted: 02/23/2022] [Indexed: 06/14/2023]
Abstract
Random matrix theory allows one to deduce the eigenvalue spectrum of a large matrix given only statistical information about its elements. Such results provide insight into what factors contribute to the stability of complex dynamical systems. In this Letter, we study the eigenvalue spectrum of an ensemble of random matrices with correlations between any pair of elements. To this end, we introduce an analytical method that maps the resolvent of the random matrix onto the response functions of a linear dynamical system. The response functions are then evaluated using a path integral formalism, enabling us to make deductions about the eigenvalue spectrum. Our central result is a simple, closed-form expression for the leading eigenvalue of a large random matrix with generalized correlations. This formula demonstrates that correlations between matrix elements that are not diagonally opposite, which are often neglected, can have a significant impact on stability.
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Affiliation(s)
- Joseph W Baron
- Instituto de Física Interdisciplinar y Sistemas Complejos IFISC (CSIC-UIB), 07122 Palma de Mallorca, Spain
| | - Thomas Jun Jewell
- Department of Physics and Astronomy, School of Natural Sciences, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Christopher Ryder
- Department of Physics and Astronomy, School of Natural Sciences, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Tobias Galla
- Instituto de Física Interdisciplinar y Sistemas Complejos IFISC (CSIC-UIB), 07122 Palma de Mallorca, Spain
- Department of Physics and Astronomy, School of Natural Sciences, The University of Manchester, Manchester M13 9PL, United Kingdom
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11
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Martí D, Brunel N, Ostojic S. Correlations between synapses in pairs of neurons slow down dynamics in randomly connected neural networks. Phys Rev E 2018; 97:062314. [PMID: 30011528 DOI: 10.1103/physreve.97.062314] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2017] [Indexed: 01/11/2023]
Abstract
Networks of randomly connected neurons are among the most popular models in theoretical neuroscience. The connectivity between neurons in the cortex is however not fully random, the simplest and most prominent deviation from randomness found in experimental data being the overrepresentation of bidirectional connections among pyramidal cells. Using numerical and analytical methods, we investigate the effects of partially symmetric connectivity on the dynamics in networks of rate units. We consider the two dynamical regimes exhibited by random neural networks: the weak-coupling regime, where the firing activity decays to a single fixed point unless the network is stimulated, and the strong-coupling or chaotic regime, characterized by internally generated fluctuating firing rates. In the weak-coupling regime, we compute analytically, for an arbitrary degree of symmetry, the autocorrelation of network activity in the presence of external noise. In the chaotic regime, we perform simulations to determine the timescale of the intrinsic fluctuations. In both cases, symmetry increases the characteristic asymptotic decay time of the autocorrelation function and therefore slows down the dynamics in the network.
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Affiliation(s)
- Daniel Martí
- Laboratoire de Neurosciences Cognitives, Inserm UMR No. 960, Ecole Normale Supérieure, PSL Research University, 75230 Paris, France
| | - Nicolas Brunel
- Department of Statistics and Department of Neurobiology, University of Chicago, Chicago, Illinois 60637, USA.,Department of Neurobiology and Department of Physics, Duke University, Durham, North Carolina 27710, USA
| | - Srdjan Ostojic
- Laboratoire de Neurosciences Cognitives, Inserm UMR No. 960, Ecole Normale Supérieure, PSL Research University, 75230 Paris, France
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Blackwell JM, Geffen MN. Progress and challenges for understanding the function of cortical microcircuits in auditory processing. Nat Commun 2017; 8:2165. [PMID: 29255268 PMCID: PMC5735136 DOI: 10.1038/s41467-017-01755-2] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2017] [Accepted: 10/12/2017] [Indexed: 12/21/2022] Open
Abstract
An important outstanding question in auditory neuroscience is to identify the mechanisms by which specific motifs within inter-connected neural circuits affect auditory processing and, ultimately, behavior. In the auditory cortex, a combination of large-scale electrophysiological recordings and concurrent optogenetic manipulations are improving our understanding of the role of inhibitory–excitatory interactions. At the same time, computational approaches have grown to incorporate diverse neuronal types and connectivity patterns. However, we are still far from understanding how cortical microcircuits encode and transmit information about complex acoustic scenes. In this review, we focus on recent results identifying the special function of different cortical neurons in the auditory cortex and discuss a computational framework for future work that incorporates ideas from network science and network dynamics toward the coding of complex auditory scenes. Advances in multi-neuron recordings and optogenetic manipulation have resulted in an interrogation of the function of specific cortical cell types in auditory cortex during sound processing. Here, the authors review this literature and discuss the merits of integrating computational approaches from dynamic network science.
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Affiliation(s)
- Jennifer M Blackwell
- Department of Otorhinolaryngology: HNS, Department of Neuroscience, Neuroscience Graduate Group, Computational Neuroscience Initiative, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Maria N Geffen
- Department of Otorhinolaryngology: HNS, Department of Neuroscience, Neuroscience Graduate Group, Computational Neuroscience Initiative, University of Pennsylvania, Philadelphia, PA, 19104, USA.
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Plasticity to the Rescue. Neuron 2016; 92:935-936. [PMID: 27930907 DOI: 10.1016/j.neuron.2016.11.042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
The balance between excitatory and inhibitory inputs is critical for the proper functioning of neural circuits. Landau and colleagues show that, in the presence of cell-type-specific connectivity, this balance is difficult to achieve without either synaptic plasticity or spike-frequency adaptation to fine-tune the connection strengths.
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