1
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Paoluzzi M, Levis D, Crisanti A, Pagonabarraga I. Noise-Induced Phase Separation and Time Reversal Symmetry Breaking in Active Field Theories Driven by Persistent Noise. PHYSICAL REVIEW LETTERS 2024; 133:118301. [PMID: 39332006 DOI: 10.1103/physrevlett.133.118301] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Revised: 01/23/2024] [Accepted: 07/25/2024] [Indexed: 09/29/2024]
Abstract
Within the Landau-Ginzburg picture of phase transitions, scalar field theories develop phase separation because of a spontaneous symmetry-breaking mechanism. This picture works in thermodynamics but also in the dynamics of phase separation. Here we show that scalar nonequilibrium field theories undergo phase separation just because of nonequilibrium fluctuations driven by a persistent noise. The mechanism is similar to what happens in motility-induced phase separation where persistent motion introduces an effective attractive force. We observe that noise-induced phase separation occurs in a region of the phase diagram where disordered field configurations would otherwise be stable at equilibrium. Measuring the local entropy production rate to quantify the time-reversal symmetry breaking, we find that such breaking is concentrated on the boundary between the two phases.
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2
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Boffi NM, Vanden-Eijnden E. Deep learning probability flows and entropy production rates in active matter. Proc Natl Acad Sci U S A 2024; 121:e2318106121. [PMID: 38861599 PMCID: PMC11194503 DOI: 10.1073/pnas.2318106121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 05/01/2024] [Indexed: 06/13/2024] Open
Abstract
Active matter systems, from self-propelled colloids to motile bacteria, are characterized by the conversion of free energy into useful work at the microscopic scale. They involve physics beyond the reach of equilibrium statistical mechanics, and a persistent challenge has been to understand the nature of their nonequilibrium states. The entropy production rate and the probability current provide quantitative ways to do so by measuring the breakdown of time-reversal symmetry. Yet, their efficient computation has remained elusive, as they depend on the system's unknown and high-dimensional probability density. Here, building upon recent advances in generative modeling, we develop a deep learning framework to estimate the score of this density. We show that the score, together with the microscopic equations of motion, gives access to the entropy production rate, the probability current, and their decomposition into local contributions from individual particles. To represent the score, we introduce a spatially local transformer network architecture that learns high-order interactions between particles while respecting their underlying permutation symmetry. We demonstrate the broad utility and scalability of the method by applying it to several high-dimensional systems of active particles undergoing motility-induced phase separation (MIPS). We show that a single network trained on a system of 4,096 particles at one packing fraction can generalize to other regions of the phase diagram, including to systems with as many as 32,768 particles. We use this observation to quantify the spatial structure of the departure from equilibrium in MIPS as a function of the number of particles and the packing fraction.
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Affiliation(s)
- Nicholas M. Boffi
- Courant Institute of Mathematical Sciences, New York University, New York, NY10012
| | - Eric Vanden-Eijnden
- Courant Institute of Mathematical Sciences, New York University, New York, NY10012
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3
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Dutta S. Most probable paths for active Ornstein-Uhlenbeck particles. Phys Rev E 2023; 107:054130. [PMID: 37329007 DOI: 10.1103/physreve.107.054130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Accepted: 05/05/2023] [Indexed: 06/18/2023]
Abstract
Fluctuations play an important role in the dynamics of stochastic systems. In particular, for small systems, the most probable thermodynamic quantities differ from their averages because of the fluctuations. Using the Onsager Machlup variational formalism we analyze the most probable paths for nonequilibrium systems, in particular, active Ornstein-Uhlenbeck particles, and investigate how the entropy production along these paths differs from the average entropy production. We investigate how much information about their nonequilibrium nature can be obtained from their extremum paths and how these paths depend on the persistence time and their swim velocities. We also look at how the entropy production along the most probable paths varies with the active noise and how it differs from the average entropy production. This study would be useful to design artificial active systems with certain target trajectories.
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Affiliation(s)
- Sandipan Dutta
- Department of Physics, Birla Institute of Technology and Science, Pilani, Rajasthan, 333031, India
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4
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Crisanti A, Paoluzzi M. Most probable path of active Ornstein-Uhlenbeck particles. Phys Rev E 2023; 107:034110. [PMID: 37072947 DOI: 10.1103/physreve.107.034110] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2022] [Accepted: 02/17/2023] [Indexed: 04/20/2023]
Abstract
Using the path integral representation of the nonequilibrium dynamics, we compute the most probable path between arbitrary starting and final points that is followed by an active particle driven by persistent noise. We focus our attention on the case of active particles immersed in harmonic potentials, where the trajectory can be computed analytically. Once we consider the extended Markovian dynamics where the self-propulsive drive evolves according to an Ornstein-Uhlenbeck process, we can compute the trajectory analytically with arbitrary conditions on position and self-propulsion velocity. We test the analytical predictions against numerical simulations and we compare the analytical results with those obtained within approximated equilibriumlike dynamics.
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Affiliation(s)
- Andrea Crisanti
- Dipartimento di Fisica, Sapienza Università di Roma Piazzale A. Moro 2, I-00185 Rome, Italy
| | - Matteo Paoluzzi
- Departament de Física de la Matèria Condensada, Universitat de Barcelona, C. Martí Franquès 1, 08028 Barcelona, Spain
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5
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Speck T. Critical behavior of active Brownian particles: Connection to field theories. Phys Rev E 2022; 105:064601. [PMID: 35854575 DOI: 10.1103/physreve.105.064601] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Accepted: 05/12/2022] [Indexed: 06/15/2023]
Abstract
We explore the relation between active Brownian particles, a minimal particle-based model for active matter, and scalar field theories. Both show a liquid-gas-like phase transition toward stable coexistence of a dense liquid with a dilute active gas that terminates in a critical point. However, a comprehensive mapping between the particle-based model parameters and the effective coefficients governing the field theories has not been established yet. We discuss conflicting recent numerical results for the critical exponents of active Brownian particles in two dimensions. Starting from the intermediate effective hydrodynamic equations, we then present a construction for a scalar order parameter for active Brownian particles that yields the active model B+. We argue that a crucial ingredient is the coupling between density and polarization in the particle current. The renormalization flow close to two dimensions exhibits a pair of perturbative fixed points that limit the attractive basin of the Wilson-Fisher fixed point, with the perspective that the critical behavior of active Brownian particles in two dimensions is governed by a strong-coupling fixed point different from Wilson-Fisher and not necessarily corresponding to Ising universality.
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Affiliation(s)
- Thomas Speck
- Institut für Physik, Johannes Gutenberg-Universität Mainz, Staudingerweg 7-9, 55128 Mainz, Germany
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6
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Paoluzzi M. Scaling of the entropy production rate in a φ^{4} model of active matter. Phys Rev E 2022; 105:044139. [PMID: 35590560 DOI: 10.1103/physreve.105.044139] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Accepted: 04/05/2022] [Indexed: 06/15/2023]
Abstract
In active φ^{4} field theories the nonequilibrium terms play an important role in describing active phase separation; however, they are irrelevant, in the renormalization group sense, at the critical point. Their irrelevance makes the critical exponents the same as those of the Ising universality class. Despite their irrelevance, they contribute to a nontrivial scaling of the entropy production rate at criticality. We consider the nonequilibrium dynamics of a nonconserved scalar field φ (Model A) driven out-of-equilibrium by a persistent noise that is correlated on a finite timescale τ, as in the case of active baths. We perform the computation of the density of entropy production rate σ and we study its scaling near the critical point. We find that similar to the case of active Model A, and although the nonlinearities responsible for nonvanishing entropy production rates in the two models are quite different, the irrelevant parameter τ makes the critical dynamics irreversible.
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Affiliation(s)
- Matteo Paoluzzi
- Departament de Física de la Matèria Condensada, Universitat de Barcelona, Carrer Martí i Franquès 1, 08028 Barcelona, Spain
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7
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Cates ME, Fodor É, Markovich T, Nardini C, Tjhung E. Stochastic Hydrodynamics of Complex Fluids: Discretisation and Entropy Production. ENTROPY 2022; 24:e24020254. [PMID: 35205548 PMCID: PMC8870959 DOI: 10.3390/e24020254] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/16/2021] [Revised: 01/18/2022] [Accepted: 01/27/2022] [Indexed: 12/04/2022]
Abstract
Many complex fluids can be described by continuum hydrodynamic field equations, to which noise must be added in order to capture thermal fluctuations. In almost all cases, the resulting coarse-grained stochastic partial differential equations carry a short-scale cutoff, which is also reflected in numerical discretisation schemes. We draw together our recent findings concerning the construction of such schemes and the interpretation of their continuum limits, focusing, for simplicity, on models with a purely diffusive scalar field, such as ‘Model B’ which describes phase separation in binary fluid mixtures. We address the requirement that the steady-state entropy production rate (EPR) must vanish for any stochastic hydrodynamic model in a thermal equilibrium. Only if this is achieved can the given discretisation scheme be relied upon to correctly calculate the nonvanishing EPR for ‘active field theories’ in which new terms are deliberately added to the fluctuating hydrodynamic equations that break detailed balance. To compute the correct probabilities of forward and time-reversed paths (whose ratio determines the EPR), we must make a careful treatment of so-called ‘spurious drift’ and other closely related terms that depend on the discretisation scheme. We show that such subtleties can arise not only in the temporal discretisation (as is well documented for stochastic ODEs with multiplicative noise) but also from spatial discretisation, even when noise is additive, as most active field theories assume. We then review how such noise can become multiplicative via off-diagonal couplings to additional fields that thermodynamically encode the underlying chemical processes responsible for activity. In this case, the spurious drift terms need careful accounting, not just to evaluate correctly the EPR but also to numerically implement the Langevin dynamics itself.
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Affiliation(s)
- Michael E. Cates
- Department of Applied Mathematics and Theoretical Physics, Centre for Mathematical Sciences, University of Cambridge, Wilberforce Road, Cambridge CB3 0WA, UK;
| | - Étienne Fodor
- Department of Physics and Materials Science, University of Luxembourg, L-1511 Luxembourg, Luxembourg;
| | - Tomer Markovich
- Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA
- Correspondence:
| | - Cesare Nardini
- Service de Physique de l’Etat Condensé, CEA, CNRS Université Paris-Saclay, CEA-Saclay, 91191 Gif-sur-Yvette, France;
- Laboratoire de Physique Théorique de la Matière Condensée, Sorbonne Université, CNRS, 75005 Paris, France
| | - Elsen Tjhung
- Department of Physics, University of Durham, Science Laboratories, South Road, Durham DH1 3LE, UK;
- School of Mathematics and Statistics, The Open University, Walton Hall, Milton Keynes MK7 6AA, UK
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8
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Paoluzzi M, Angelani L, Gosti G, Marchetti MC, Pagonabarraga I, Ruocco G. Alignment interactions drive structural transitions in biological tissues. Phys Rev E 2021; 104:044606. [PMID: 34781522 DOI: 10.1103/physreve.104.044606] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Accepted: 09/23/2021] [Indexed: 12/24/2022]
Abstract
Experimental evidence shows that there is a feedback between cell shape and cell motion. How this feedback impacts the collective behavior of dense cell monolayers remains an open question. We investigate the effect of a feedback that tends to align the cell crawling direction with cell elongation in a biological tissue model. We find that the alignment interaction promotes nematic patterns in the fluid phase that eventually undergo a nonequilibrium phase transition into a quasihexagonal solid. Meanwhile, highly asymmetric cells do not undergo the liquid-to-solid transition for any value of the alignment coupling. In this regime, the dynamics of cell centers and shape fluctuation show features typical of glassy systems.
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Affiliation(s)
- Matteo Paoluzzi
- Departament de Física de la Matèria Condensada, Universitat de Barcelona, C. Martí Franquès 1, 08028 Barcelona, Spain
| | - Luca Angelani
- ISC-CNR, Institute for Complex Systems, Piazzale A. Moro 2, I-00185 Rome, Italy.,Dipartimento di Fisica, Sapienza Università di Roma Piazzale A. Moro 2, I-00185 Rome, Italy
| | - Giorgio Gosti
- Center for Life Nano Science, Istituto Italiano di Tecnologia, Viale Regina Elena 291, I-00161 Rome, Italy
| | - M Cristina Marchetti
- Department of Physics, University of California Santa Barbara, Santa Barbara, California 93106, USA
| | - Ignacio Pagonabarraga
- Departament de Física de la Matèria Condensada, Universitat de Barcelona, C. Martí Franquès 1, 08028 Barcelona, Spain.,CECAM Centre Européen de Calcul Atomique et Moléculaire, École Polytechnique Fédérale de Lausanne (EPFL), Batochime, Avenue Forel 2, 1015 Lausanne, Switzerland.,UBICS University of Barcelona Institute of Complex Systems, Martí i Franquès 1, 08028 Barcelona, Spain
| | - Giancarlo Ruocco
- Dipartimento di Fisica, Sapienza Università di Roma Piazzale A. Moro 2, I-00185 Rome, Italy.,Center for Life Nano Science, Istituto Italiano di Tecnologia, Viale Regina Elena 291, I-00161 Rome, Italy
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9
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Maggi C, Paoluzzi M, Crisanti A, Zaccarelli E, Gnan N. Universality class of the motility-induced critical point in large scale off-lattice simulations of active particles. SOFT MATTER 2021; 17:3807-3812. [PMID: 33645615 DOI: 10.1039/d0sm02162h] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
We perform large-scale computer simulations of an off-lattice two-dimensional model of active particles undergoing a motility-induced phase separation (MIPS) to investigate the system's critical behaviour close to the critical point of the MIPS curve. By sampling steady-state configurations for large system sizes and performing finite size scaling analysis we provide exhaustive evidence that the critical behaviour of this active system belongs to the Ising universality class. In addition to the scaling observables that are also typical of passive systems, we study the critical behaviour of the kinetic temperature difference between the two active phases. This quantity, which is always zero in equilibrium, displays instead a critical behavior in the active system which is well described by the same exponent of the order parameter in agreement with mean-field theory.
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Affiliation(s)
- Claudio Maggi
- NANOTEC-CNR, Institute of Nanotechnology, Soft and Living Matter Laboratory -Piazzale A. Moro 2, I-00185, Roma, Italy. and Dipartimento di Fisica, Università di Roma "Sapienza", I-00185, Roma, Italy
| | - Matteo Paoluzzi
- Departamento de Fìsica de la Matèria Condensada, Universitat de Barcelona, C. MartìFranquès 1, 08028 Barcelona, Spain
| | - Andrea Crisanti
- Dipartimento di Fisica, Università di Roma "Sapienza", I-00185, Roma, Italy and CNR-ISC, Institute of Complex Systems, Roma, Italy.
| | - Emanuela Zaccarelli
- Dipartimento di Fisica, Università di Roma "Sapienza", I-00185, Roma, Italy and CNR-ISC, Institute of Complex Systems, Roma, Italy.
| | - Nicoletta Gnan
- Dipartimento di Fisica, Università di Roma "Sapienza", I-00185, Roma, Italy and CNR-ISC, Institute of Complex Systems, Roma, Italy.
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10
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Jose F, Anand SK, Singh SP. Phase separation of an active colloidal suspension via quorum-sensing. SOFT MATTER 2021; 17:3153-3161. [PMID: 33616149 DOI: 10.1039/d0sm02131h] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
We present the Brownian dynamics simulation of an active colloidal suspension in two dimensions, where the self-propulsion speed of a colloid is regulated according to the local density sensed by it. The role of concentration-dependent motility in the phase-separation of colloids and their dynamics is investigated in detail. Interestingly, the system phase separates at a very low packing fraction (Φ≈ 0.125) at higher self-propulsion speeds (Pe), into a dense phase coexisting with a homogeneous phase and attains a long-range crystalline order beyond the transition point. The transition point is quantified here from the local density profiles and local and global-bond order parameters. We have shown that the characteristics of the phase diagram are qualitatively akin to the active Brownian particle (ABP) model. Moreover, our investigation reveals that the density-dependent motility amplifies the slow-down of the directed speed, which facilitates phase-separation even at low packing fractions. The effective diffusivity shows a crossover from quadratic rise to a power-law behavior of exponent 3/2 with Pe in the phase-separated regime. Furthermore, we have shown that the effective diffusion decreases exponentially with packing fraction in the phase-separated regime, while it shows a linear decrease in the single phase regime.
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Affiliation(s)
- Francis Jose
- Department of Physics, Indian Institute of Science Education and Research, Bhopal 462 066, Madhya Pradesh, India.
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11
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Chvykov P, Berrueta TA, Vardhan A, Savoie W, Samland A, Murphey TD, Wiesenfeld K, Goldman DI, England JL. Low rattling: A predictive principle for self-organization in active collectives. Science 2021; 371:90-95. [PMID: 33384378 DOI: 10.1126/science.abc6182] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Accepted: 11/27/2020] [Indexed: 12/21/2022]
Abstract
Self-organization is frequently observed in active collectives as varied as ant rafts and molecular motor assemblies. General principles describing self-organization away from equilibrium have been challenging to identify. We offer a unifying framework that models the behavior of complex systems as largely random while capturing their configuration-dependent response to external forcing. This allows derivation of a Boltzmann-like principle for understanding and manipulating driven self-organization. We validate our predictions experimentally, with the use of shape-changing robotic active matter, and outline a methodology for controlling collective behavior. Our findings highlight how emergent order depends sensitively on the matching between external patterns of forcing and internal dynamical response properties, pointing toward future approaches for the design and control of active particle mixtures and metamaterials.
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Affiliation(s)
- Pavel Chvykov
- Physics of Living Systems, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Thomas A Berrueta
- Department of Mechanical Engineering, Northwestern University, Evanston, IL 60208, USA
| | - Akash Vardhan
- School of Physics, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | - William Savoie
- School of Physics, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | - Alexander Samland
- Department of Mechanical Engineering, Northwestern University, Evanston, IL 60208, USA
| | - Todd D Murphey
- Department of Mechanical Engineering, Northwestern University, Evanston, IL 60208, USA
| | - Kurt Wiesenfeld
- School of Physics, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | - Daniel I Goldman
- School of Physics, Georgia Institute of Technology, Atlanta, GA 30332, USA
| | - Jeremy L England
- School of Physics, Georgia Institute of Technology, Atlanta, GA 30332, USA. .,GlaxoSmithKline AI/ML, 200 Cambridgepark Drive, Cambridge, MA 02140, USA
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12
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Dulaney AR, Mallory SA, Brady JF. The "isothermal" compressibility of active matter. J Chem Phys 2021; 154:014902. [PMID: 33412882 DOI: 10.1063/5.0029364] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
We demonstrate that the mechanically defined "isothermal" compressibility behaves as a thermodynamic-like response function for suspensions of active Brownian particles. The compressibility computed from the active pressure-a combination of the collision and unique swim pressures-is capable of predicting the critical point for motility induced phase separation, as expected from the mechanical stability criterion. We relate this mechanical definition to the static structure factor via an active form of the thermodynamic compressibility equation and find the two to be equivalent, as would be the case for equilibrium systems. This equivalence indicates that compressibility behaves like a thermodynamic response function, even when activity is large. Finally, we discuss the importance of the phase interface when defining an active chemical potential. Previous definitions of the active chemical potential are shown to be accurate above the critical point but breakdown in the coexistence region. Inclusion of the swim pressure in the mechanical compressibility definition suggests that the interface is essential for determining phase behavior.
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Affiliation(s)
- Austin R Dulaney
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
| | - Stewart A Mallory
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
| | - John F Brady
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
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13
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Abstract
The diffusion in two dimensions of noninteracting active particles that follow an arbitrary motility pattern is considered for analysis. A Fokker-Planck-like equation is generalized to take into account an arbitrary distribution of scattered angles of the swimming direction, which encompasses the pattern of active motion of particles that move at constant speed. An exact analytical expression for the marginal probability density of finding a particle on a given position at a given instant, independently of its direction of motion, is provided, and a connection with a generalized diffusion equation is unveiled. Exact analytical expressions for the time dependence of the mean-square displacement and of the kurtosis of the distribution of the particle positions are presented. The analysis is focused in the intermediate-time regime, where the effects of the specific pattern of active motion are conspicuous. For this, it is shown that only the expectation value of the first two harmonics of the scattering angle of the direction of motion are needed. The effects of persistence and of circular motion are discussed for different families of distributions of the scattered direction of motion.
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Affiliation(s)
- Francisco J Sevilla
- Instituto de Física, Universidad Nacional Autónoma de México, Apdo. Postal 20-364, 01000, Ciudad de México, México
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14
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Carenza LN, Gonnella G, Lamura A, Negro G, Tiribocchi A. Lattice Boltzmann methods and active fluids. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2019; 42:81. [PMID: 31250142 DOI: 10.1140/epje/i2019-11843-6] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Accepted: 05/24/2019] [Indexed: 05/24/2023]
Abstract
We review the state of the art of active fluids with particular attention to hydrodynamic continuous models and to the use of Lattice Boltzmann Methods (LBM) in this field. We present the thermodynamics of active fluids, in terms of liquid crystals modelling adapted to describe large-scale organization of active systems, as well as other effective phenomenological models. We discuss how LBM can be implemented to solve the hydrodynamics of active matter, starting from the case of a simple fluid, for which we explicitly recover the continuous equations by means of Chapman-Enskog expansion. Going beyond this simple case, we summarize how LBM can be used to treat complex and active fluids. We then review recent developments concerning some relevant topics in active matter that have been studied by means of LBM: spontaneous flow, self-propelled droplets, active emulsions, rheology, active turbulence, and active colloids.
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Affiliation(s)
- Livio Nicola Carenza
- Dipartimento di Fisica, Università degli Studi di Bari, and INFN Sezione di Bari, Via Amendola 173, 70126, Bari, Italy
| | - Giuseppe Gonnella
- Dipartimento di Fisica, Università degli Studi di Bari, and INFN Sezione di Bari, Via Amendola 173, 70126, Bari, Italy.
| | - Antonio Lamura
- Istituto Applicazioni Calcolo, CNR, Via Amendola 122/D, 70126, Bari, Italy
| | - Giuseppe Negro
- Dipartimento di Fisica, Università degli Studi di Bari, and INFN Sezione di Bari, Via Amendola 173, 70126, Bari, Italy
| | - Adriano Tiribocchi
- Center for Life Nano Science@La Sapienza, Istituto Italiano di Tecnologia, 00161, Roma, Italy
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15
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Krinninger P, Schmidt M. Power functional theory for active Brownian particles: General formulation and power sum rules. J Chem Phys 2019; 150:074112. [DOI: 10.1063/1.5061764] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Philip Krinninger
- Theoretische Physik II, Physikalisches Institut, Universität Bayreuth, D-95440 Bayreuth, Germany
| | - Matthias Schmidt
- Theoretische Physik II, Physikalisches Institut, Universität Bayreuth, D-95440 Bayreuth, Germany
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16
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Paoluzzi M, Marconi UMB, Maggi C. Effective equilibrium picture in the xy model with exponentially correlated noise. Phys Rev E 2018; 97:022605. [PMID: 29548092 DOI: 10.1103/physreve.97.022605] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2017] [Indexed: 11/07/2022]
Abstract
We study the effect of exponentially correlated noise on the xy model in the limit of small correlation time, discussing the order-disorder transition in the mean field and the topological transition in two dimensions. We map the steady states of the nonequilibrium dynamics into an effective equilibrium theory. In the mean field, the critical temperature increases with the noise correlation time τ, indicating that memory effects promote ordering. This finding is confirmed by numerical simulations. The topological transition temperature in two dimensions remains untouched. However, finite-size effects induce a crossover in the vortices proliferation that is confirmed by numerical simulations.
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Affiliation(s)
- Matteo Paoluzzi
- Department of Physics and Syracuse Soft & Living Matter Program, Syracuse University, Syracuse, New York 13244, USA
| | - Umberto Marini Bettolo Marconi
- Scuola di Scienze e Tecnologie, Università di Camerino, Via Madonna delle Carceri, 62032 Camerino, Italy.,INFN Perugia, 06123 Perugia, Italy
| | - Claudio Maggi
- NANOTEC-CNR, Institute of Nanotechnology, Soft and Living Matter Laboratory, Piazzale A. Moro 2, 00185 Rome, Italy
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17
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Mandal D, Klymko K, DeWeese MR. Entropy Production and Fluctuation Theorems for Active Matter. PHYSICAL REVIEW LETTERS 2017; 119:258001. [PMID: 29303303 DOI: 10.1103/physrevlett.119.258001] [Citation(s) in RCA: 70] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2017] [Indexed: 05/18/2023]
Abstract
Active biological systems reside far from equilibrium, dissipating heat even in their steady state, thus requiring an extension of conventional equilibrium thermodynamics and statistical mechanics. In this Letter, we have extended the emerging framework of stochastic thermodynamics to active matter. In particular, for the active Ornstein-Uhlenbeck model, we have provided consistent definitions of thermodynamic quantities such as work, energy, heat, entropy, and entropy production at the level of single, stochastic trajectories and derived related fluctuation relations. We have developed a generalization of the Clausius inequality, which is valid even in the presence of the non-Hamiltonian dynamics underlying active matter systems. We have illustrated our results with explicit numerical studies.
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Affiliation(s)
- Dibyendu Mandal
- Department of Physics, University of California, Berkeley, California 94720, USA
| | - Katherine Klymko
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Michael R DeWeese
- Department of Physics, University of California, Berkeley, California 94720, USA
- Redwood Center for Theoretical Neuroscience and Helen Wills Neuroscience Institute, University of California, Berkeley, California 94720, USA
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Marini Bettolo Marconi U, Maggi C, Paoluzzi M. Pressure in an exactly solvable model of active fluid. J Chem Phys 2017; 147:024903. [DOI: 10.1063/1.4991731] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
| | - Claudio Maggi
- NANOTEC-CNR, Institute of Nanotechnology, Soft and Living Matter Laboratory, Piazzale A. Moro 2, I-00185 Roma, Italy
| | - Matteo Paoluzzi
- Department of Physics, Syracuse University, Syracuse, New York 13244, USA
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Heat, temperature and Clausius inequality in a model for active Brownian particles. Sci Rep 2017; 7:46496. [PMID: 28429787 PMCID: PMC5399351 DOI: 10.1038/srep46496] [Citation(s) in RCA: 62] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2016] [Accepted: 03/17/2015] [Indexed: 11/20/2022] Open
Abstract
Methods of stochastic thermodynamics and hydrodynamics are applied to a recently introduced model of active particles. The model consists of an overdamped particle subject to Gaussian coloured noise. Inspired by stochastic thermodynamics, we derive from the system’s Fokker-Planck equation the average exchanges of heat and work with the active bath and the associated entropy production. We show that a Clausius inequality holds, with the local (non-uniform) temperature of the active bath replacing the uniform temperature usually encountered in equilibrium systems. Furthermore, by restricting the dynamical space to the first velocity moments of the local distribution function we derive a hydrodynamic description where local pressure, kinetic temperature and internal heat fluxes appear and are consistent with the previous thermodynamic analysis. The procedure also shows under which conditions one obtains the unified coloured noise approximation (UCNA): such an approximation neglects the fast relaxation to the active bath and therefore yields detailed balance and zero entropy production. In the last part, by using multiple time-scale analysis, we provide a constructive method (alternative to UCNA) to determine the solution of the Kramers equation and go beyond the detailed balance condition determining negative entropy production.
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