1
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Forão GAL, Filho FS, Akasaki BAN, Fiore CE. Thermodynamics of underdamped Brownian collisional engines: General features and resonant phenomena. Phys Rev E 2024; 110:054125. [PMID: 39690699 DOI: 10.1103/physreve.110.054125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2024] [Accepted: 10/11/2024] [Indexed: 12/19/2024]
Abstract
Collisional Brownian engines have been proposed as alternatives to nonequilibrium nanoscale engines. However, most studies have focused on the simpler overdamped case, leaving the role of inertia much less explored. In this work, we introduce the idea of collisional engines to underdamped Brownian particles, where at each stage the particle is sequentially subjected to a distinct driving force. A careful comparison between the performance of underdamped and overdamped Brownian work-to-work engines has been undertaken. The results show that underdamped Brownian engines generally outperform their overdamped counterparts. A key difference is the presence of a resonant regime in underdamped engines, in which both efficiency and power output are enhanced across a broad set of parameters. Our study highlights the importance of carefully selecting dynamics and driving protocols to achieve optimal engine performance.
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Affiliation(s)
| | - Fernando S Filho
- Universidade de São Paulo, Instituto de Física, Rua do Matão, 1371, 05508-090 São Paulo, SP, Brazil
- UHasselt, Faculty of Sciences, Theory Lab, Agoralaan, 3590 Diepenbeek, Belgium
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2
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Varma SG, Mitra A, Sarkar S. Self-diffusion is temperature independent on active membranes. Phys Chem Chem Phys 2024; 26:23348-23362. [PMID: 39211961 DOI: 10.1039/d4cp02470b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]
Abstract
Molecular transport maintains cellular structures and functions. For example, lipid and protein diffusion sculpts the dynamic shapes and structures on the cell membrane that perform essential cellular functions, such as cell signaling. Temperature variations in thermal equilibrium rapidly change molecular transport properties. The coefficient of lipid self-diffusion increases exponentially with temperature in thermal equilibrium, for example. Hence, maintaining cellular homeostasis through molecular transport is hard in thermal equilibrium in the noisy cellular environment, where temperatures can fluctuate widely due to local heat generation. In this paper, using both molecular and lattice-based modeling of membrane transport, we show that the presence of active transport originating from the cell's cytoskeleton can make the self-diffusion of the molecules on the membrane robust to temperature fluctuations. The resultant temperature-independence of self-diffusion keeps the precision of cellular signaling invariant over a broad range of ambient temperatures, allowing cells to make robust decisions. We have also found that the Kawasaki algorithm, the widely used model of lipid transport on lattices, predicts incorrect temperature dependence of lipid self-diffusion in equilibrium. We propose a new algorithm that correctly captures the equilibrium properties of lipid self-diffusion and reproduces experimental observations.
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Affiliation(s)
- Saurav G Varma
- Center for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bengaluru, Karnataka, 560012, India.
| | - Argha Mitra
- Center for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bengaluru, Karnataka, 560012, India.
| | - Sumantra Sarkar
- Center for Condensed Matter Theory, Department of Physics, Indian Institute of Science, Bengaluru, Karnataka, 560012, India.
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3
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Sau Fa K. Two coupled population growth models driven by Gaussian white noises. CHAOS (WOODBURY, N.Y.) 2024; 34:093138. [PMID: 39321469 DOI: 10.1063/5.0226621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Accepted: 09/05/2024] [Indexed: 09/27/2024]
Abstract
Exact solution for the probability density function is considered for two coupled population growth models driven by Gaussian white noises. Moreover, n-moments of interactions of the Gompertz and Verhulst logistic models are obtained and analyzed. It is shown that interactions can modify the behaviors of the population growth models, i.e, the species may collaborate and/or compete between them.
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Affiliation(s)
- Kwok Sau Fa
- Departamento de Física, Universidade Estadual de Maringá, Av. Colombo 5790, 87020-900 Maringá-PR, Brazil
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4
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Sevilla FJ, Valdés-Gómez A, Torres-Carbajal A. Anomalous diffusion of scaled Brownian tracers. Phys Rev E 2024; 110:014113. [PMID: 39160948 DOI: 10.1103/physreve.110.014113] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Accepted: 05/29/2024] [Indexed: 08/21/2024]
Abstract
A model for anomalous transport of tracer particles diffusing in complex media in two dimensions is proposed. The model takes into account the characteristics of persistent motion that an active bath transfers to the tracer; thus, the model proposed here extends active Brownian motion, for which the stochastic dynamics of the orientation of the propelling force is described by scaled Brownian motion (sBm), identified by time-dependent diffusivity of the form D_{β}∝t^{β-1}, β>0. If β≠1, sBm is highly nonstationary and suitable to describe such nonequilibrium dynamics induced by complex media. In this paper, we provide analytical calculations and computer simulations to show that genuine anomalous diffusion emerges in the long-time regime, with a time scaling of the mean-squared displacement t^{2-β}, while ballistic transport t^{2}, characteristic of persistent motion, is found in the short-time regime. We also analyze the time dependence of the kurtosis, and the intermediate scattering function of the position distribution, as well as the propulsion autocorrelation function, which defines the effective persistence time.
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5
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Ow MJK, Yeow EKL. Revealing the Existence of Long-Range Liquid-Liquid Interfacial Potential in Phase-Transfer Processes. J Phys Chem Lett 2024; 15:6241-6248. [PMID: 38842186 DOI: 10.1021/acs.jpclett.4c01135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2024]
Abstract
By employing fluorescence wide-field microscopy and a nanoparticle-based phase transfer catalyst (PTC), consisting of a fluorescent silica nanoparticle functionalized with trioctylpropylammonium bromide, we demonstrate that in the presence of NaOH, single nanoparticles display subdiffusive motion along the axis normal to an aqueous liquid-organic liquid interface. This is because of an extended interfacial potential with a shallow well (∼1 kBT) that stretches a few μm into the organic phase, in contrast to previous molecular dynamics studies that reported narrow interfaces on the order of ∼1 nm. Spontaneous interfacial emulsification induced by NaOH results in the propagation of water-in-oil nanoemulsions into the organic solvent that creates an equilibrium hybrid-solvent composition that solvates the PTC. A greater mobility and longer residence time of the PTC at the potential well enhance the interfacial phase transfer process and catalytic efficiency.
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Affiliation(s)
- Matthew J K Ow
- School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore
| | - Edwin K L Yeow
- School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, 21 Nanyang Link, Singapore 637371, Singapore
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6
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Nolte DD. Coherent light scattering from cellular dynamics in living tissues. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2024; 87:036601. [PMID: 38433567 DOI: 10.1088/1361-6633/ad2229] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Accepted: 01/24/2024] [Indexed: 03/05/2024]
Abstract
This review examines the biological physics of intracellular transport probed by the coherent optics of dynamic light scattering from optically thick living tissues. Cells and their constituents are in constant motion, composed of a broad range of speeds spanning many orders of magnitude that reflect the wide array of functions and mechanisms that maintain cellular health. From the organelle scale of tens of nanometers and upward in size, the motion inside living tissue is actively driven rather than thermal, propelled by the hydrolysis of bioenergetic molecules and the forces of molecular motors. Active transport can mimic the random walks of thermal Brownian motion, but mean-squared displacements are far from thermal equilibrium and can display anomalous diffusion through Lévy or fractional Brownian walks. Despite the average isotropic three-dimensional environment of cells and tissues, active cellular or intracellular transport of single light-scattering objects is often pseudo-one-dimensional, for instance as organelle displacement persists along cytoskeletal tracks or as membranes displace along the normal to cell surfaces, albeit isotropically oriented in three dimensions. Coherent light scattering is a natural tool to characterize such tissue dynamics because persistent directed transport induces Doppler shifts in the scattered light. The many frequency-shifted partial waves from the complex and dynamic media interfere to produce dynamic speckle that reveals tissue-scale processes through speckle contrast imaging and fluctuation spectroscopy. Low-coherence interferometry, dynamic optical coherence tomography, diffusing-wave spectroscopy, diffuse-correlation spectroscopy, differential dynamic microscopy and digital holography offer coherent detection methods that shed light on intracellular processes. In health-care applications, altered states of cellular health and disease display altered cellular motions that imprint on the statistical fluctuations of the scattered light. For instance, the efficacy of medical therapeutics can be monitored by measuring the changes they induce in the Doppler spectra of livingex vivocancer biopsies.
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Affiliation(s)
- David D Nolte
- Department of Physics and Astronomy, Purdue University, West Lafayette, IN 47907, United States of America
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7
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Li MG, Hu M, Fan LM, Bao JD, Li PC. Quantifying the energy landscape in weakly and strongly disordered frictional media. J Chem Phys 2024; 160:024903. [PMID: 38189619 DOI: 10.1063/5.0178092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Accepted: 12/19/2023] [Indexed: 01/09/2024] Open
Abstract
We investigate the "roughness" of the energy landscape of a system that diffuses in a heterogeneous medium with a random position-dependent friction coefficient α(x). This random friction acting on the system stems from spatial inhomogeneity in the surrounding medium and is modeled using the generalized Caldira-Leggett model. For a weakly disordered medium exhibiting a Gaussian random diffusivity D(x) = kBT/α(x) characterized by its average value ⟨D(x)⟩ and a pair-correlation function ⟨D(x1)D(x2)⟩, we find that the renormalized intrinsic diffusion coefficient is lower than the average one due to the fluctuations in diffusivity. The induced weak internal friction leads to increased roughness in the energy landscape. When applying this idea to diffusive motion in liquid water, the dissociation energy for a hydrogen bond gradually approaches experimental findings as fluctuation parameters increase. Conversely, for a strongly disordered medium (i.e., ultrafast-folding proteins), the energy landscape ranges from a few to a few kcal/mol, depending on the strength of the disorder. By fitting protein folding dynamics to the escape process from a metastable potential, the decreased escape rate conceptualizes the role of strong internal friction. Studying the energy landscape in complex systems is helpful because it has implications for the dynamics of biological, soft, and active matter systems.
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Affiliation(s)
- Ming-Gen Li
- Department of Physics, Shantou University, Shantou, Guangdong 515063, China
| | - Meng Hu
- Department of Mathematics and Physics, North China Electric Power University, Baoding 071003, China
| | - Li-Ming Fan
- College of Physical Science and Technology, Shenyang Normal University, Shenyang 110034, China
| | - Jing-Dong Bao
- Department of Physics, Beijing Normal University, Beijing 100048, China
| | - Peng-Cheng Li
- Department of Physics, Shantou University, Shantou, Guangdong 515063, China
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8
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Li Y, Suleiman K, Xu Y. Anomalous diffusion, non-Gaussianity, nonergodicity, and confinement in stochastic-scaled Brownian motion with diffusing diffusivity dynamics. Phys Rev E 2024; 109:014139. [PMID: 38366530 DOI: 10.1103/physreve.109.014139] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 12/07/2023] [Indexed: 02/18/2024]
Abstract
Scaled Brownian motions (SBMs) with power-law time-dependent diffusivity have been used to describe various types of anomalous diffusion yet Gaussian observed in granular gases kinetics, turbulent diffusion, and molecules mobility in cells, to name a few. However, some of these systems may exhibit non-Gaussian behavior which can be described by SBM with diffusing diffusivity (DD-SBM). Here, we numerically investigate both free and confined DD-SBM models characterized by fixed or stochastic scaling exponent of time-dependent diffusivity. The effects of distributed scaling exponent, random diffusivity, and confinement are considered. Different regimes of ultraslow diffusion, subdiffusion, normal diffusion, and superdiffusion are observed. In addition, weak ergodic and non-Gaussian behaviors are also detected. These results provide insights into diffusion in time-fluctuating diffusivity landscapes with potential applications to time-dependent temperature systems spreading in heterogeneous environments.
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Affiliation(s)
- Yongge Li
- School of Mathematics and Statistics, Northwestern Polytechnical University, Xi'an 710072, China
| | - Kheder Suleiman
- School of Mathematics and Statistics, Northwestern Polytechnical University, Xi'an 710072, China
| | - Yong Xu
- School of Mathematics and Statistics, Northwestern Polytechnical University, Xi'an 710072, China
- MOE Key Laboratory for Complexity Science in Aerospace, Northwestern Polytechnical University, Xi'an 710072, China
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9
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Liang Y, Wang W, Metzler R, Cherstvy AG. Anomalous diffusion, nonergodicity, non-Gaussianity, and aging of fractional Brownian motion with nonlinear clocks. Phys Rev E 2023; 108:034113. [PMID: 37849140 DOI: 10.1103/physreve.108.034113] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Accepted: 08/07/2023] [Indexed: 10/19/2023]
Abstract
How do nonlinear clocks in time and/or space affect the fundamental properties of a stochastic process? Specifically, how precisely may ergodic processes such as fractional Brownian motion (FBM) acquire predictable nonergodic and aging features being subjected to such conditions? We address these questions in the current study. To describe different types of non-Brownian motion of particles-including power-law anomalous, ultraslow or logarithmic, as well as superfast or exponential diffusion-we here develop and analyze a generalized stochastic process of scaled-fractional Brownian motion (SFBM). The time- and space-SFBM processes are, respectively, constructed based on FBM running with nonlinear time and space clocks. The fundamental statistical characteristics such as non-Gaussianity of particle displacements, nonergodicity, as well as aging are quantified for time- and space-SFBM by selecting different clocks. The latter parametrize power-law anomalous, ultraslow, and superfast diffusion. The results of our computer simulations are fully consistent with the analytical predictions for several functional forms of clocks. We thoroughly examine the behaviors of the probability-density function, the mean-squared displacement, the time-averaged mean-squared displacement, as well as the aging factor. Our results are applicable for rationalizing the impact of nonlinear time and space properties superimposed onto the FBM-type dynamics. SFBM offers a general framework for a universal and more precise model-based description of anomalous, nonergodic, non-Gaussian, and aging diffusion in single-molecule-tracking observations.
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Affiliation(s)
- Yingjie Liang
- College of Mechanics and Materials, Hohai University, 211100 Nanjing, China
- Institute of Physics and Astronomy, University of Potsdam, 14476 Potsdam, Germany
| | - Wei Wang
- Institute of Physics and Astronomy, University of Potsdam, 14476 Potsdam, Germany
| | - Ralf Metzler
- Institute of Physics and Astronomy, University of Potsdam, 14476 Potsdam, Germany
- Asia Pacific Center for Theoretical Physics, Pohang 37673, Republic of Korea
| | - Andrey G Cherstvy
- Institute of Physics and Astronomy, University of Potsdam, 14476 Potsdam, Germany
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10
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Hua DY, Khan RAA, Luo MB. Langevin Dynamics Simulation on the Diffusivity of Polymers in Crowded Environments with Immobile Nanoparticles. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c01786] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Dao-Yang Hua
- Department of Physics, Zhejiang University, Hangzhou310027, China
| | | | - Meng-Bo Luo
- Department of Physics, Zhejiang University, Hangzhou310027, China
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11
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Vinod D, Cherstvy AG, Metzler R, Sokolov IM. Time-averaging and nonergodicity of reset geometric Brownian motion with drift. Phys Rev E 2022; 106:034137. [PMID: 36266856 DOI: 10.1103/physreve.106.034137] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2022] [Accepted: 08/09/2022] [Indexed: 06/16/2023]
Abstract
How do near-bankruptcy events in the past affect the dynamics of stock-market prices in the future? Specifically, what are the long-time properties of a time-local exponential growth of stock-market prices under the influence of stochastically occurring economic crashes? Here, we derive the ensemble- and time-averaged properties of the respective "economic" or geometric Brownian motion (GBM) with a nonzero drift exposed to a Poissonian constant-rate price-restarting process of "resetting." We examine-based both on thorough analytical calculations and on findings from systematic stochastic computer simulations-the general situation of reset GBM with a nonzero [positive] drift and for all special cases emerging for varying parameters of drift, volatility, and reset rate in the model. We derive and summarize all short- and long-time dependencies for the mean-squared displacement (MSD), the variance, and the mean time-averaged MSD (TAMSD) of the process of Poisson-reset GBM under the conditions of both rare and frequent resetting. We consider three main regions of model parameters and categorize the crossovers between different functional behaviors of the statistical quantifiers of this process. The analytical relations are fully supported by the results of computer simulations. In particular, we obtain that Poisson-reset GBM is a nonergodic stochastic process, with generally MSD(Δ)≠TAMSD(Δ) and Variance(Δ)≠TAMSD(Δ) at short lag times Δ and for long trajectory lengths T. We investigate the behavior of the ergodicity-breaking parameter in each of the three regions of parameters and examine its dependence on the rate of reset at Δ/T≪1. Applications of these theoretical results to the analysis of prices of reset-containing options are pertinent.
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Affiliation(s)
- Deepak Vinod
- Institute for Physics & Astronomy, University of Potsdam, Karl-Liebknecht-Straße 24/25, 14476 Potsdam-Golm, Germany
| | - Andrey G Cherstvy
- Institute for Physics & Astronomy, University of Potsdam, Karl-Liebknecht-Straße 24/25, 14476 Potsdam-Golm, Germany
- Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany
| | - Ralf Metzler
- Institute for Physics & Astronomy, University of Potsdam, Karl-Liebknecht-Straße 24/25, 14476 Potsdam-Golm, Germany
| | - Igor M Sokolov
- Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany
- IRIS Adlershof, Zum Großen Windkanal 6, 12489 Berlin, Germany
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12
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Luo Y, Zeng C, Li B. Negative rectification and anomalous diffusion in nonlinear substrate potentials: Dynamical relaxation and information entropy. Phys Rev E 2022; 105:024204. [PMID: 35291109 DOI: 10.1103/physreve.105.024204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Accepted: 01/12/2022] [Indexed: 06/14/2023]
Abstract
We numerically investigate the rectification of the probability flux and dynamical relaxation of particles moving in a system with and without noise. The system, driven by two external forces, consists of two substrate potentials that have identical shapes and different potential barriers with different friction coefficients. The deterministic model exhibits the perfect rectification of the probability flux, ratchet effect, and the dependence of the unpredictability of the dynamics on basin of attraction. In contrast, the stochastic model displays that the rectification is sensitive to the temperature and an external bias. They can induce kinetic phase transitions between no transport and a finite net transport. These transitions lead to an unexpected phenomenon, called negative rectification. The results are analyzed through the corresponding time-dependent diffusion coefficient, information entropy (IE), etc. At a low temperature, anomalous diffusions occur in system. For the occurrence of the flux in certain parameter regimes, the larger the diffusion is, the smaller the corresponding IE is, and vice versa. We also present the selected parameter regimes for the emergence of the rectification and negative rectification. Additionally, we study the rectification of the interacting particles in the system and find that the flux may depend on the coupling strength and the number of the interacting particles, and that collective motions occur for the forward flux. Our work provides not only a way of the rectification for the transport of various particles (e.g., ions, electrons, photons, phonons, molecules, DNA chains, nanoswimmers, dust particles, etc.) in physics, chemistry, biology, and material science, but also a design of various circuits.
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Affiliation(s)
- Yuhui Luo
- Faculty of Civil Engineering and Mechanics/Faculty of Science, Kunming University of Science and Technology, Kunming 650500, China
- School of Physics and Information Engineering, Zhaotong University, Zhaotong 657000, China
| | - Chunhua Zeng
- Faculty of Civil Engineering and Mechanics/Faculty of Science, Kunming University of Science and Technology, Kunming 650500, China
| | - Baowen Li
- Paul M. Rady Department of Mechanical Engineering and Department of Physics, University of Colorado, Boulder, Colorado 80309-0427, USA
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13
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Klett K, Cherstvy AG, Shin J, Sokolov IM, Metzler R. Non-Gaussian, transiently anomalous, and ergodic self-diffusion of flexible dumbbells in crowded two-dimensional environments: Coupled translational and rotational motions. Phys Rev E 2022; 104:064603. [PMID: 35030844 DOI: 10.1103/physreve.104.064603] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Accepted: 11/18/2021] [Indexed: 12/22/2022]
Abstract
We employ Langevin-dynamics simulations to unveil non-Brownian and non-Gaussian center-of-mass self-diffusion of massive flexible dumbbell-shaped particles in crowded two-dimensional solutions. We study the intradumbbell dynamics of the relative motion of the two constituent elastically coupled disks. Our main focus is on effects of the crowding fraction ϕ and of the particle structure on the diffusion characteristics. We evaluate the time-averaged mean-squared displacement (TAMSD), the displacement probability-density function (PDF), and the displacement autocorrelation function (ACF) of the dimers. For the TAMSD at highly crowded conditions of dumbbells, e.g., we observe a transition from the short-time ballistic behavior, via an intermediate subdiffusive regime, to long-time Brownian-like spreading dynamics. The crowded system of dimers exhibits two distinct diffusion regimes distinguished by the scaling exponent of the TAMSD, the dependence of the diffusivity on ϕ, and the features of the displacement-ACF. We attribute these regimes to a crowding-induced transition from viscous to viscoelastic diffusion upon growing ϕ. We also analyze the relative motion in the dimers, finding that larger ϕ suppress their vibrations and yield strongly non-Gaussian PDFs of rotational displacements. For the diffusion coefficients D(ϕ) of translational and rotational motion of the dumbbells an exponential decay with ϕ for weak and a power-law variation D(ϕ)∝(ϕ-ϕ^{★})^{2.4} for strong crowding is found. A comparison of simulation results with theoretical predictions for D(ϕ) is discussed and some relevant experimental systems are overviewed.
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Affiliation(s)
- Kolja Klett
- Institute of Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
| | - Andrey G Cherstvy
- Institute of Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany.,Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany
| | - Jaeoh Shin
- Department of Chemistry, Rice University, Houston, Texas 77005, USA.,Center for Theoretical Biological Physics, Rice University, Houston, Texas 77005, USA
| | - Igor M Sokolov
- Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany.,IRIS Adlershof, Zum Großen Windkanal 6, 12489 Berlin, Germany
| | - Ralf Metzler
- Institute of Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
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14
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Wang W, Metzler R, Cherstvy AG. Anomalous diffusion, aging, and nonergodicity of scaled Brownian motion with fractional Gaussian noise: overview of related experimental observations and models. Phys Chem Chem Phys 2022; 24:18482-18504. [DOI: 10.1039/d2cp01741e] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
How does a systematic time-dependence of the diffusion coefficient $D (t)$ affect the ergodic and statistical characteristics of fractional Brownian motion (FBM)? Here, we examine how the behavior of the...
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15
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Cherstvy AG, Wang W, Metzler R, Sokolov IM. Inertia triggers nonergodicity of fractional Brownian motion. Phys Rev E 2021; 104:024115. [PMID: 34525594 DOI: 10.1103/physreve.104.024115] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Accepted: 07/29/2021] [Indexed: 11/07/2022]
Abstract
How related are the ergodic properties of the over- and underdamped Langevin equations driven by fractional Gaussian noise? We here find that for massive particles performing fractional Brownian motion (FBM) inertial effects not only destroy the stylized fact of the equivalence of the ensemble-averaged mean-squared displacement (MSD) to the time-averaged MSD (TAMSD) of overdamped or massless FBM, but also dramatically alter the values of the ergodicity-breaking parameter (EB). Our theoretical results for the behavior of EB for underdamped or massive FBM for varying particle mass m, Hurst exponent H, and trace length T are in excellent agreement with the findings of stochastic computer simulations. The current results can be of interest for the experimental community employing various single-particle-tracking techniques and aiming at assessing the degree of nonergodicity for the recorded time series (studying, e.g., the behavior of EB versus lag time). To infer FBM as a realizable model of anomalous diffusion for a set single-particle-tracking data when massive particles are being tracked, the EBs from the data should be compared to EBs of massive (rather than massless) FBM.
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Affiliation(s)
- Andrey G Cherstvy
- Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany.,Institute for Physics & Astronomy, University of Potsdam, Karl-Liebknecht-Straße 24/25, 14476 Potsdam-Golm, Germany
| | - Wei Wang
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Straße 38, 01187 Dresden, Germany
| | - Ralf Metzler
- Institute for Physics & Astronomy, University of Potsdam, Karl-Liebknecht-Straße 24/25, 14476 Potsdam-Golm, Germany
| | - Igor M Sokolov
- Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany.,IRIS Adlershof, Zum Großen Windkanal 6, 12489 Berlin, Germany
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16
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Wang W, Cherstvy AG, Kantz H, Metzler R, Sokolov IM. Time averaging and emerging nonergodicity upon resetting of fractional Brownian motion and heterogeneous diffusion processes. Phys Rev E 2021; 104:024105. [PMID: 34525678 DOI: 10.1103/physreve.104.024105] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Accepted: 07/14/2021] [Indexed: 12/12/2022]
Abstract
How different are the results of constant-rate resetting of anomalous-diffusion processes in terms of their ensemble-averaged versus time-averaged mean-squared displacements (MSDs versus TAMSDs) and how does stochastic resetting impact nonergodicity? We examine, both analytically and by simulations, the implications of resetting on the MSD- and TAMSD-based spreading dynamics of particles executing fractional Brownian motion (FBM) with a long-time memory, heterogeneous diffusion processes (HDPs) with a power-law space-dependent diffusivity D(x)=D_{0}|x|^{γ} and their "combined" process of HDP-FBM. We find, inter alia, that the resetting dynamics of originally ergodic FBM for superdiffusive Hurst exponents develops disparities in scaling and magnitudes of the MSDs and mean TAMSDs indicating weak ergodicity breaking. For subdiffusive HDPs we also quantify the nonequivalence of the MSD and TAMSD and observe a new trimodal form of the probability density function. For reset FBM, HDPs and HDP-FBM we compute analytically and verify by simulations the short-time MSD and TAMSD asymptotes and long-time plateaus reminiscent of those for processes under confinement. We show that certain characteristics of these reset processes are functionally similar despite a different stochastic nature of their nonreset variants. Importantly, we discover nonmonotonicity of the ergodicity-breaking parameter EB as a function of the resetting rate r. For all reset processes studied we unveil a pronounced resetting-induced nonergodicity with a maximum of EB at intermediate r and EB∼(1/r)-decay at large r. Alongside the emerging MSD-versus-TAMSD disparity, this r-dependence of EB can be an experimentally testable prediction. We conclude by discussing some implications to experimental systems featuring resetting dynamics.
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Affiliation(s)
- Wei Wang
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Straße 38, 01187 Dresden, Germany
| | - Andrey G Cherstvy
- Institute for Physics & Astronomy University of Potsdam, Karl-Liebknecht-Straße 24/25, 14476 Potsdam-Golm, Germany.,Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany
| | - Holger Kantz
- Max Planck Institute for the Physics of Complex Systems, Nöthnitzer Straße 38, 01187 Dresden, Germany
| | - Ralf Metzler
- Institute for Physics & Astronomy University of Potsdam, Karl-Liebknecht-Straße 24/25, 14476 Potsdam-Golm, Germany
| | - Igor M Sokolov
- Institut für Physik, Humboldt-Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany.,IRIS Adlershof, Zum Großen Windkanal 6, 12489 Berlin, Germany
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17
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Abstract
Motivated from the central role of the mean-square displacement and its second time-derivative - that is the velocity autocorrelation function in the description of Brownian motion and its implications to microrheology, we revisit the physical meaning of the first time-derivative of the mean-square displacement of Brownian particles. By employing a rheological analogue for Brownian motion, we show that the time-derivative of the mean-square displacement of Brownian microspheres with mass m and radius R immersed in any linear, isotropic viscoelastic material is identical to , where h(t) is the impulse response function (strain history γ(t), due to an impulse stress τ(t) = δ(t - 0)) of a rheological network that is a parallel connection of the linear viscoelastic material with an inerter with distributed inertance . The impulse response function of the viscoelastic material-inerter parallel connection derived in this paper at the stress-strain level of the rheological analogue is essentially the response function of the Brownian particles expressed at the force-displacement level by Nishi et al. after making use of the fluctuation-dissipation theorem. By employing the viscoelastic material-inerter rheological analogue we derive the mean-square displacement and its time-derivatives of Brownian particles immersed in a viscoelastic material described with a Maxwell element connected in parallel with a dashpot and we show that for Brownian motion of microparticles immersed in such fluid-like materials, the impulse response function h(t) maintains a finite constant value in the long term.
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Affiliation(s)
- Nicos Makris
- Dept. of Civil and Environmental Engineering, Southern Methodist University, Dallas, Texas 75276, USA. and Office of Theoretical and Applied Mechanics, Academy of Athens, 10679, Greece
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18
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Balcerek M, Burnecki K, Sikora G, Wyłomańska A. Discriminating Gaussian processes via quadratic form statistics. CHAOS (WOODBURY, N.Y.) 2021; 31:063101. [PMID: 34241327 DOI: 10.1063/5.0044878] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Accepted: 05/10/2021] [Indexed: 06/13/2023]
Abstract
Gaussian processes are powerful tools for modeling and predicting various numerical data. Hence, checking their quality of fit becomes a vital issue. In this article, we introduce a testing methodology for general Gaussian processes based on a quadratic form statistic. We illustrate the methodology on three statistical tests recently introduced in the literature, which are based on the sample autocovariance function, time average mean-squared displacement, and detrended moving average statistics. We compare the usefulness of the tests by taking into consideration three very important Gaussian processes: the fractional Brownian motion, which is self-similar with stationary increments (SSSIs), scaled Brownian motion, which is self-similar with independent increments (SSIIs), and the Ornstein-Uhlenbeck (OU) process, which is stationary. We show that the considered statistics' ability to distinguish between these Gaussian processes is high, and we identify the best performing tests for different scenarios. We also find that there is no omnibus quadratic form test; however, the detrended moving average test seems to be the first choice in distinguishing between same processes with different parameters. We also show that the detrended moving average method outperforms the Cholesky method. Based on the previous findings, we introduce a novel procedure of discriminating between Gaussian SSSI, SSII, and stationary processes. Finally, we illustrate the proposed procedure by applying it to real-world data, namely, the daily EURUSD currency exchange rates, and show that the data can be modeled by the OU process.
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Affiliation(s)
- Michał Balcerek
- Faculty of Pure and Applied Mathematics, Hugo Steinhaus Center, Wroclaw University of Science and Technology, Wyspianskiego 27, 50-370 Wroclaw, Poland
| | - Krzysztof Burnecki
- Faculty of Pure and Applied Mathematics, Hugo Steinhaus Center, Wroclaw University of Science and Technology, Wyspianskiego 27, 50-370 Wroclaw, Poland
| | - Grzegorz Sikora
- Faculty of Pure and Applied Mathematics, Hugo Steinhaus Center, Wroclaw University of Science and Technology, Wyspianskiego 27, 50-370 Wroclaw, Poland
| | - Agnieszka Wyłomańska
- Faculty of Pure and Applied Mathematics, Hugo Steinhaus Center, Wroclaw University of Science and Technology, Wyspianskiego 27, 50-370 Wroclaw, Poland
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19
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Abad E, Angstmann CN, Henry BI, McGann AV, Le Vot F, Yuste SB. Reaction-diffusion and reaction-subdiffusion equations on arbitrarily evolving domains. Phys Rev E 2020; 102:032111. [PMID: 33075977 DOI: 10.1103/physreve.102.032111] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Accepted: 08/19/2020] [Indexed: 01/22/2023]
Abstract
Reaction-diffusion equations are widely used as the governing evolution equations for modeling many physical, chemical, and biological processes. Here we derive reaction-diffusion equations to model transport with reactions on a one-dimensional domain that is evolving. The model equations, which have been derived from generalized continuous time random walks, can incorporate complexities such as subdiffusive transport and inhomogeneous domain stretching and shrinking. Inhomogeneously growing domains are frequently encountered in biological phenomena involving stochastic transport, such as tumor growth and morphogen gradient formation. A method for constructing analytic expressions for short-time moments of the position of the particles is developed and moments calculated from this approach are shown to compare favorably with results from random walk simulations and numerical integration of the reaction transport equation. The results show the important role played by the initial condition. In particular, it strongly affects the time dependence of the moments in the short-time regime by introducing additional drift and diffusion terms. We also discuss how our reaction transport equation could be applied to study the spreading of a population on an evolving interface. From a more general perspective, our findings help to mitigate the scarcity of analytic results for reaction-diffusion problems in geometries displaying nonuniform growth. They are also expected to pave the way for further results, including the treatment of first-passage problems associated with encounter-controlled reactions in such domains.
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Affiliation(s)
- E Abad
- Departamento de Física Aplicada and Instituto de Computación Científica Avanzada, Centro Universitario de Mérida, Universidad de Extremadura, 06800 Mérida, Spain
| | - C N Angstmann
- School of Mathematics and Statistics, UNSW, Sydney New South Wales, 2052, Australia
| | | | | | - F Le Vot
- Departamento de Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain
| | - S B Yuste
- Departamento de Física and Instituto de Computación Científica Avanzada, Universidad de Extremadura, 06071 Badajoz, Spain
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20
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Wang W, Cherstvy AG, Liu X, Metzler R. Anomalous diffusion and nonergodicity for heterogeneous diffusion processes with fractional Gaussian noise. Phys Rev E 2020; 102:012146. [PMID: 32794926 DOI: 10.1103/physreve.102.012146] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Accepted: 06/22/2020] [Indexed: 01/09/2023]
Abstract
Heterogeneous diffusion processes (HDPs) feature a space-dependent diffusivity of the form D(x)=D_{0}|x|^{α}. Such processes yield anomalous diffusion and weak ergodicity breaking, the asymptotic disparity between ensemble and time averaged observables, such as the mean-squared displacement. Fractional Brownian motion (FBM) with its long-range correlated yet Gaussian increments gives rise to anomalous and ergodic diffusion. Here, we study a combined model of HDPs and FBM to describe the particle dynamics in complex systems with position-dependent diffusivity driven by fractional Gaussian noise. This type of motion is, inter alia, relevant for tracer-particle diffusion in biological cells or heterogeneous complex fluids. We show that the long-time scaling behavior predicted theoretically and by simulations for the ensemble- and time-averaged mean-squared displacements couple the scaling exponents α of HDPs and the Hurst exponent H of FBM in a characteristic way. Our analysis of the simulated data in terms of the rescaled variable y∼|x|^{1/(2/(2-α))}/t^{H} coupling particle position x and time t yields a simple, Gaussian probability density function (PDF), P_{HDP-FBM}(y)=e^{-y^{2}}/sqrt[π]. Its universal shape agrees well with theoretical predictions for both uni- and bimodal PDF distributions.
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Affiliation(s)
- Wei Wang
- College of Aerospace Engineering, Nanjing University of Aeronautics and Astronautics, 210016 Nanjing, China.,Institute for Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
| | - Andrey G Cherstvy
- Institute for Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
| | - Xianbin Liu
- College of Aerospace Engineering, Nanjing University of Aeronautics and Astronautics, 210016 Nanjing, China
| | - Ralf Metzler
- Institute for Physics & Astronomy, University of Potsdam, 14476 Potsdam-Golm, Germany
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21
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Bodrova AS, Sokolov IM. Continuous-time random walks under power-law resetting. Phys Rev E 2020; 101:062117. [PMID: 32688585 DOI: 10.1103/physreve.101.062117] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Accepted: 05/20/2020] [Indexed: 06/11/2023]
Abstract
We study continuous-time random walks (CTRW) with power-law distribution of waiting times under resetting which brings the walker back to the origin, with a power-law distribution of times between the resetting events. Two situations are considered. Under complete resetting, the CTRW after the resetting event starts anew, with a new waiting time, independent of the prehistory. Under incomplete resetting, the resetting of the coordinate does not influence the waiting time until the next jump. We focus on the behavior of the mean-squared displacement (MSD) of the walker from its initial position, on the conditions under which the probability density functions of the walker's displacement show universal behavior, and on this universal behavior itself. We show, that the behavior of the MSD is the same as in the scaled Brownian motion (SBM), being the mean-field model of the CTRW. The intermediate asymptotics of the probability density functions (PDF) for CTRW under complete resetting (provided they exist) are also the same as in the corresponding case for SBM. For incomplete resetting, however, the behavior of the PDF for CTRW and SBM is vastly different.
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Affiliation(s)
- Anna S Bodrova
- Department of Physics, Humboldt University, Newtonstrasse 15, D-12489 Berlin, Germany
| | - Igor M Sokolov
- Department of Physics, Humboldt University, Newtonstrasse 15, D-12489 Berlin, Germany
- IRIS Adlershof, Zum Großen Windkanal 6, D-12489 Berlin, Germany
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22
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Guerrero BV, Chakraborty B, Zuriguel I, Garcimartín A. Nonergodicity in silo unclogging: Broken and unbroken arches. Phys Rev E 2019; 100:032901. [PMID: 31639941 DOI: 10.1103/physreve.100.032901] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Indexed: 11/07/2022]
Abstract
We report an experiment on the unclogging dynamics in a two-dimensional silo submitted to a sustained gentle vibration. We find that arches present a jerking motion where rearrangements in the positions of their beads are interspersed with quiescent periods. This behavior occurs for both arches that break down and those that withstand the external perturbation: Arches evolve until they either collapse or get trapped in a stable configuration. This evolution is described in terms of a scalar variable characterizing the arch shape that can be modeled as a continuous-time random walk. By studying the diffusivity of this variable, we show that the unclogging is a weakly nonergodic process. Remarkably, arches that do not collapse explore different configurations before settling in one of them and break ergodicity much in the same way than arches that break down.
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Affiliation(s)
- B V Guerrero
- Dep. Física y Mat. Apl., Fac. Ciencias, Universidad de Navarra, 31080 Pamplona, Spain
| | - B Chakraborty
- Martin Fisher School of Physics, Brandeis University, Waltham, Massachusetts 02454, USA
| | - I Zuriguel
- Dep. Física y Mat. Apl., Fac. Ciencias, Universidad de Navarra, 31080 Pamplona, Spain
| | - A Garcimartín
- Dep. Física y Mat. Apl., Fac. Ciencias, Universidad de Navarra, 31080 Pamplona, Spain
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23
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Bodrova AS, Chechkin AV, Sokolov IM. Nonrenewal resetting of scaled Brownian motion. Phys Rev E 2019; 100:012119. [PMID: 31499839 DOI: 10.1103/physreve.100.012119] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Indexed: 11/07/2022]
Abstract
We investigate an intermittent stochastic process in which diffusive motion with a time-dependent diffusion coefficient, D(t)∼t^{α-1}, α>0 (scaled Brownian motion), is stochastically reset to its initial position and starts anew. The resetting follows a renewal process with either an exponential or a power-law distribution of the waiting times between successive renewals. The resetting events, however, do not affect the time dependence of the diffusion coefficient, so that the whole process appears to be a nonrenewal one. We discuss the mean squared displacement of a particle and the probability density function of its positions in this process. We show that scaled Brownian motion with resetting demonstrates rich behavior whose properties essentially depend on the interplay of the parameters of the resetting process and the particle's displacement infree motion. The motion of particles can remain almost unaffected by resetting but can also get slowed down or even be completely suppressed. Especially interesting are the nonstationary situations in which the mean squared displacement stagnates but the distribution of positions does not tend to any steady state. This behavior is compared to the situation [discussed in the companion paper; A. S. Bodrova et al., Phys. Rev. E 100, 012120 (2019)10.1103/PhysRevE.100.012120] in which the memory of the value of the diffusion coefficient at a resetting time is erased, so that the whole process is a fully renewal one. We show that the properties of the probability densities in such processes (erasing or retaining the memory on the diffusion coefficient) are vastly different.
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Affiliation(s)
- Anna S Bodrova
- Department of Physics, Humboldt University, Newtonstrasse 15, 12489 Berlin, Germany.,Moscow Institute of Electronics and Mathematics, National Research University Higher School of Economics, Moscow 123458, Russia.,Faculty of Physics, M. V. Lomonosov Moscow State University, Moscow 119991, Russia
| | - Aleksei V Chechkin
- Institute of Physics and Astronomy, University of Potsdam, 14476 Potsdam, Germany.,Akhiezer Institute for Theoretical Physics, Kharkov Institute of Physics and Technology, 61108 Kharkov, Ukraine
| | - Igor M Sokolov
- Department of Physics, Humboldt University, Newtonstrasse 15, 12489 Berlin, Germany
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24
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Palamarchuk ES. On Upper Functions for Anomalous Diffusions Governed by Time-Varying Ornstein--Uhlenbeck Process. THEORY OF PROBABILITY AND ITS APPLICATIONS 2019. [DOI: 10.1137/s0040585x97t989453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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25
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Budini AA. Memory-induced diffusive-superdiffusive transition: Ensemble and time-averaged observables. Phys Rev E 2017; 95:052110. [PMID: 28618554 DOI: 10.1103/physreve.95.052110] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2017] [Indexed: 06/07/2023]
Abstract
The ensemble properties and time-averaged observables of a memory-induced diffusive-superdiffusive transition are studied. The model consists in a random walker whose transitions in a given direction depend on a weighted linear combination of the number of both right and left previous transitions. The diffusion process is nonstationary, and its probability develops the phenomenon of aging. Depending on the characteristic memory parameters, the ensemble behavior may be normal, superdiffusive, or ballistic. In contrast, the time-averaged mean squared displacement is equal to that of a normal undriven random walk, which renders the process nonergodic. In addition, and similarly to Lévy walks [Godec and Metzler, Phys. Rev. Lett. 110, 020603 (2013)PRLTAO0031-900710.1103/PhysRevLett.110.020603], for trajectories of finite duration the time-averaged displacement apparently become random with properties that depend on the measurement time and also on the memory properties. These features are related to the nonstationary power-law decay of the transition probabilities to their stationary values. Time-averaged response to a bias is also calculated. In contrast with Lévy walks [Froemberg and Barkai, Phys. Rev. E 87, 030104(R) (2013)PLEEE81539-375510.1103/PhysRevE.87.030104], the response always vanishes asymptotically.
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Affiliation(s)
- Adrián A Budini
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Centro Atómico Bariloche, Avenida E. Bustillo Km 9.5, (8400) Bariloche, Argentina and Universidad Tecnológica Nacional (UTN-FRBA), Fanny Newbery 111, (8400) Bariloche, Argentina
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