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Arai T, Kawamura Y, Aoyagi T. Setting of the Poincaré section for accurately calculating the phase of rhythmic spatiotemporal dynamics. Phys Rev E 2025; 111:014205. [PMID: 39972746 DOI: 10.1103/physreve.111.014205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Accepted: 12/10/2024] [Indexed: 02/21/2025]
Abstract
Synchronization analysis of real-world systems is essential across numerous fields, including physics, chemistry, and life sciences. Generally, the governing equations of these systems are unknown, and thus, the phase is calculated from measurements. Although existing phase calculation techniques are designed for oscillators that possess no spatial structure, methods for handling spatiotemporal dynamics remain undeveloped. The presence of spatial structure complicates the determination of which measurements should be used for accurate phase calculation. To address this, we explore a method for calculating the phase from measurements taken at a single spatial grid point. The phase is calculated to increase linearly between event times when the measurement time series intersects the Poincaré section. The difference between the calculated phase and the isochron-based phase, resulting from the discrepancy between the isochron and the Poincaré section, is evaluated using a linear approximation near the limit-cycle solution. We found that the difference is small when measurements are taken from regions that dominate the rhythms of the entire spatiotemporal dynamics. Furthermore, we investigate an alternative method where the Poincaré section is applied to time series obtained through orthogonal decomposition of the entire spatiotemporal dynamics. We present two decomposition schemes that utilize principal component analysis. For illustration, the phase is calculated from the measurements of spatiotemporal dynamics exhibiting target waves or oscillating spots, simulated by weakly coupled FitzHugh-Nagumo reaction-diffusion models.
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Affiliation(s)
- Takahiro Arai
- Japan Agency for Marine-Earth Science and Technology, Center for Mathematical Science and Advanced Technology, Yokohama 236-0001, Japan
| | - Yoji Kawamura
- Japan Agency for Marine-Earth Science and Technology, Center for Mathematical Science and Advanced Technology, Yokohama 236-0001, Japan
| | - Toshio Aoyagi
- Kyoto University, Graduate School of Informatics, Yoshida-Honmachi, Sakyo-ku, Kyoto 606-8501, Japan
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Takata S, Kato Y, Nakao H. Fast optimal entrainment of limit-cycle oscillators by strong periodic inputs via phase-amplitude reduction and Floquet theory. CHAOS (WOODBURY, N.Y.) 2021; 31:093124. [PMID: 34598448 DOI: 10.1063/5.0054603] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2021] [Accepted: 08/30/2021] [Indexed: 06/13/2023]
Abstract
Optimal entrainment of limit-cycle oscillators by strong periodic inputs is studied on the basis of the phase-amplitude reduction and Floquet theory. Two methods for deriving the input waveforms that keep the system state close to the original limit cycle are proposed, which enable the use of strong inputs for entrainment. The first amplitude-feedback method uses feedback control to suppress deviations of the system state from the limit cycle, while the second amplitude-penalty method seeks an input waveform that does not excite large deviations from the limit cycle in the feedforward framework. Optimal entrainment of the van der Pol and Willamowski-Rössler oscillators with real or complex Floquet exponents is analyzed as examples. It is demonstrated that the proposed methods can achieve considerably faster entrainment and provide wider entrainment ranges than the conventional method that relies only on phase reduction.
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Affiliation(s)
- Shohei Takata
- Department of Systems and Control Engineering, Tokyo Institute of Technology, Tokyo 152-8552, Japan
| | - Yuzuru Kato
- Department of Systems and Control Engineering, Tokyo Institute of Technology, Tokyo 152-8552, Japan
| | - Hiroya Nakao
- Department of Systems and Control Engineering, Tokyo Institute of Technology, Tokyo 152-8552, Japan
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Nakao H, Yamaguchi K, Katayama S, Yanagita T. Sparse optimization of mutual synchronization in collectively oscillating networks. CHAOS (WOODBURY, N.Y.) 2021; 31:063113. [PMID: 34241311 DOI: 10.1063/5.0049091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Accepted: 05/14/2021] [Indexed: 06/13/2023]
Abstract
We consider a pair of collectively oscillating networks of dynamical elements and optimize their internetwork coupling for efficient mutual synchronization based on the phase reduction theory developed by Nakao et al. [Chaos 28, 045103 (2018)]. The dynamical equations describing a pair of weakly coupled networks are reduced to a pair of coupled phase equations, and the linear stability of the synchronized state between the networks is represented as a function of the internetwork coupling matrix. We seek the optimal coupling by minimizing the Frobenius and L1 norms of the internetwork coupling matrix for the prescribed linear stability of the synchronized state. Depending on the norm, either a dense or sparse internetwork coupling yielding efficient mutual synchronization of the networks is obtained. In particular, a sparse yet resilient internetwork coupling is obtained by L1-norm optimization with additional constraints on the individual connection weights.
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Affiliation(s)
- Hiroya Nakao
- Department of Systems and Control Engineering, Tokyo Institute of Technology, Tokyo 152-8552, Japan
| | - Katsunori Yamaguchi
- Department of Systems and Control Engineering, Tokyo Institute of Technology, Tokyo 152-8552, Japan
| | - Shingo Katayama
- Department of Systems and Control Engineering, Tokyo Institute of Technology, Tokyo 152-8552, Japan
| | - Tatsuo Yanagita
- Department of Engineering Science, Osaka Electro-Communication University, Neyagawa, Osaka 572-8530, Japan
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Watanabe N, Kato Y, Shirasaka S, Nakao H. Optimization of linear and nonlinear interaction schemes for stable synchronization of weakly coupled limit-cycle oscillators. Phys Rev E 2019; 100:042205. [PMID: 31770949 DOI: 10.1103/physreve.100.042205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Indexed: 06/10/2023]
Abstract
Optimization of mutual synchronization between a pair of limit-cycle oscillators with weak symmetric coupling is considered in the framework of the phase-reduction theory. By generalizing our previous study [S. Shirasaka, N. Watanabe, Y. Kawamura, and H. Nakao, Optimizing stability of mutual synchronization between a pair of limit-cycle oscillators with weak cross coupling, Phys. Rev. E 96, 012223 (2017)2470-004510.1103/PhysRevE.96.012223] on the optimization of cross-diffusion coupling matrices between the oscillators, we consider optimization of mutual coupling signals to maximize the linear stability of the synchronized state, which are functionals of the past time sequences of the oscillator states. For the case of linear coupling, optimization of the delay time and linear filtering of coupling signals are considered. For the case of nonlinear coupling, general drive-response coupling is considered and the optimal response and driving functions are derived. The theoretical results are illustrated by numerical simulations.
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Affiliation(s)
- Nobuhiro Watanabe
- Department of Systems and Control Engineering, Tokyo Institute of Technology, Tokyo 152-8552, Japan
| | - Yuzuru Kato
- Department of Systems and Control Engineering, Tokyo Institute of Technology, Tokyo 152-8552, Japan
| | - Sho Shirasaka
- Department of Information and Physical Sciences, Graduate School of Information Science and Technology, Osaka University 1-5 Yamadaoka, Suita, Osaka 565-0871, Japan
| | - Hiroya Nakao
- Department of Systems and Control Engineering, Tokyo Institute of Technology, Tokyo 152-8552, Japan
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Nakao H, Yasui S, Ota M, Arai K, Kawamura Y. Phase reduction and synchronization of a network of coupled dynamical elements exhibiting collective oscillations. CHAOS (WOODBURY, N.Y.) 2018; 28:045103. [PMID: 31906627 DOI: 10.1063/1.5009669] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
A general phase reduction method for a network of coupled dynamical elements exhibiting collective oscillations, which is applicable to arbitrary networks of heterogeneous dynamical elements, is developed. A set of coupled adjoint equations for phase sensitivity functions, which characterize the phase response of the collective oscillation to small perturbations applied to individual elements, is derived. Using the phase sensitivity functions, collective oscillation of the network under weak perturbation can be described approximately by a one-dimensional phase equation. As an example, mutual synchronization between a pair of collectively oscillating networks of excitable and oscillatory FitzHugh-Nagumo elements with random coupling is studied.
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Affiliation(s)
- Hiroya Nakao
- Department of Systems and Control Engineering, Tokyo Institute of Technology, Tokyo 152-8552, Japan
| | - Sho Yasui
- Department of Mechanical and Environmental Informatics, Tokyo Institute of Technology, Tokyo 152-8552, Japan
| | - Masashi Ota
- Department of Mechanical and Environmental Informatics, Tokyo Institute of Technology, Tokyo 152-8552, Japan
| | - Kensuke Arai
- Department of Statistics and Mathematics, Boston University, Boston, Massachusetts 02215, USA
| | - Yoji Kawamura
- Department of Mathematical Science and Advanced Technology, Japan Agency for Marine-Earth Science and Technology, Yokohama 236-0001, Japan
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Kawamura Y, Tsubaki R. Phase reduction approach to elastohydrodynamic synchronization of beating flagella. Phys Rev E 2018; 97:022212. [PMID: 29548174 DOI: 10.1103/physreve.97.022212] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2017] [Indexed: 06/08/2023]
Abstract
We formulate a theory for the phase reduction of a beating flagellum. The theory enables us to describe the dynamics of a beating flagellum in a systematic manner using a single variable called the phase. The theory can also be considered as a phase reduction method for the limit-cycle solutions in infinite-dimensional dynamical systems, namely, the limit-cycle solutions to partial differential equations representing beating flagella. We derive the phase sensitivity function, which quantifies the phase response of a beating flagellum to weak perturbations applied at each point and at each time. Using the phase sensitivity function, we analyze the phase synchronization between a pair of beating flagella through hydrodynamic interactions at a low Reynolds number.
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Affiliation(s)
- Yoji Kawamura
- Department of Mathematical Science and Advanced Technology, Japan Agency for Marine-Earth Science and Technology, Yokohama 236-0001, Japan
- Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology, Yokosuka 237-0061, Japan
| | - Remi Tsubaki
- Research and Development Center for Marine Biosciences, Japan Agency for Marine-Earth Science and Technology, Yokosuka 237-0061, Japan
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Shirasaka S, Watanabe N, Kawamura Y, Nakao H. Optimizing stability of mutual synchronization between a pair of limit-cycle oscillators with weak cross coupling. Phys Rev E 2017; 96:012223. [PMID: 29347076 DOI: 10.1103/physreve.96.012223] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2017] [Indexed: 12/22/2022]
Abstract
We consider optimization of the linear stability of synchronized states between a pair of weakly coupled limit-cycle oscillators with cross coupling, where different components of state variables of the oscillators are allowed to interact. On the basis of the phase reduction theory, we derive the coupling matrix between different components of the oscillator states that maximizes the linear stability of the synchronized state under given constraints on the overall coupling intensity and the stationary phase difference. The improvement in the linear stability is illustrated by using several types of limit-cycle oscillators as examples.
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Affiliation(s)
- Sho Shirasaka
- Research Center for Advanced Science and Technology, University of Tokyo, Tokyo 153-8904, Japan
| | - Nobuhiro Watanabe
- Department of Systems and Control Engineering, Tokyo Institute of Technology, Tokyo 152-8552, Japan
| | - Yoji Kawamura
- Department of Mathematical Science and Advanced Technology, Japan Agency for Marine-Earth Science and Technology, Yokohama 236-0001, Japan
| | - Hiroya Nakao
- Department of Systems and Control Engineering, Tokyo Institute of Technology, Tokyo 152-8552, Japan.,Department of Mechanical Engineering, University of California, Santa Barbara, California 93106, USA
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