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Dunham CS, Mackenzie ME, Nakano H, Kim AR, Juda MB, Nakano A, Stieg AZ, Gimzewski JK. Pacemaker translocations and power laws in 2D stem cell-derived cardiomyocyte cultures. PLoS One 2022; 17:e0263976. [PMID: 35286321 PMCID: PMC8920264 DOI: 10.1371/journal.pone.0263976] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2021] [Accepted: 02/01/2022] [Indexed: 11/18/2022] Open
Abstract
Power laws are of interest to several scientific disciplines because they can provide important information about the underlying dynamics (e.g. scale invariance and self-similarity) of a given system. Because power laws are of increasing interest to the cardiac sciences as potential indicators of cardiac dysfunction, it is essential that rigorous, standardized analytical methods are employed in the evaluation of power laws. This study compares the methods currently used in the fields of condensed matter physics, geoscience, neuroscience, and cardiology in order to provide a robust analytical framework for evaluating power laws in stem cell-derived cardiomyocyte cultures. One potential power law-obeying phenomenon observed in these cultures is pacemaker translocations, or the spatial and temporal instability of the pacemaker region, in a 2D cell culture. Power law analysis of translocation data was performed using increasingly rigorous methods in order to illustrate how differences in analytical robustness can result in misleading power law interpretations. Non-robust methods concluded that pacemaker translocations adhere to a power law while robust methods convincingly demonstrated that they obey a doubly truncated power law. The results of this study highlight the importance of employing comprehensive methods during power law analysis of cardiomyocyte cultures.
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Affiliation(s)
- Christopher S. Dunham
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California, United States of America
| | - Madelynn E. Mackenzie
- Department of Microbiology, Immunology & Molecular Genetics, University of California, Los Angeles, California, United States of America
| | - Haruko Nakano
- Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, California, United States of America
| | - Alexis R. Kim
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California, United States of America
| | - Michal B. Juda
- Molecular Biology Institute, University of California, Los Angeles, California, United States of America
| | - Atsushi Nakano
- Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, California, United States of America
- Molecular Biology Institute, University of California, Los Angeles, California, United States of America
- Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California, Los Angeles, California, United States of America
- Division of Cardiology, Department of Medicine, University of California, Los Angeles, California, United States of America
- Department of Cell Physiology, The Jikei University, Tokyo, Japan
| | - Adam Z. Stieg
- California NanoSystems Institute, University of California, Los Angeles, California, United States of America
- International Center for Materials Nanoarchitectonics (MANA), National Institute of Materials Science, Tsukuba, Japan
| | - James K. Gimzewski
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California, United States of America
- California NanoSystems Institute, University of California, Los Angeles, California, United States of America
- International Center for Materials Nanoarchitectonics (MANA), National Institute of Materials Science, Tsukuba, Japan
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No Significant Effect of Coulomb Stress on the Gutenberg-Richter Law after the Landers Earthquake. Sci Rep 2020; 10:2901. [PMID: 32075986 PMCID: PMC7031507 DOI: 10.1038/s41598-020-59416-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Accepted: 01/28/2020] [Indexed: 11/08/2022] Open
Abstract
AbstractCoulomb-stress theory has been used for years in seismology to understand how earthquakes trigger each other. Whenever an earthquake occurs, the stress field changes, and places with positive increases are brought closer to failure. Earthquake models that relate earthquake rates and Coulomb stress after a main event, such as the rate-and-state model, assume that the magnitude distribution of earthquakes is not affected by the change in the Coulomb stress. By using different slip models, we calculate the change in Coulomb stress in the fault plane for every aftershock after the Landers event (California, USA, 1992, moment magnitude 7.3). Applying several statistical analyses to test whether the distribution of magnitudes is sensitive to the sign of the Coulomb-stress increase, we are not able to find any significant effect. Further, whereas the events with a positive increase of the stress are characterized by a much larger proportion of strike-slip events in comparison with the seismicity previous to the mainshock, the events happening despite a decrease in Coulomb stress show no relevant differences in focal-mechanism distribution with respect to previous seismicity.
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Corral Á, Serra I. The Brevity Law as a Scaling Law, and a Possible Origin of Zipf's Law for Word Frequencies. ENTROPY 2020; 22:e22020224. [PMID: 33285998 PMCID: PMC7516654 DOI: 10.3390/e22020224] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/31/2019] [Revised: 02/12/2020] [Accepted: 02/12/2020] [Indexed: 11/16/2022]
Abstract
An important body of quantitative linguistics is constituted by a series of statistical laws about language usage. Despite the importance of these linguistic laws, some of them are poorly formulated, and, more importantly, there is no unified framework that encompasses all them. This paper presents a new perspective to establish a connection between different statistical linguistic laws. Characterizing each word type by two random variables-length (in number of characters) and absolute frequency-we show that the corresponding bivariate joint probability distribution shows a rich and precise phenomenology, with the type-length and the type-frequency distributions as its two marginals, and the conditional distribution of frequency at fixed length providing a clear formulation for the brevity-frequency phenomenon. The type-length distribution turns out to be well fitted by a gamma distribution (much better than with the previously proposed lognormal), and the conditional frequency distributions at fixed length display power-law-decay behavior with a fixed exponent α ≃ 1.4 and a characteristic-frequency crossover that scales as an inverse power δ ≃ 2.8 of length, which implies the fulfillment of a scaling law analogous to those found in the thermodynamics of critical phenomena. As a by-product, we find a possible model-free explanation for the origin of Zipf's law, which should arise as a mixture of conditional frequency distributions governed by the crossover length-dependent frequency.
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Affiliation(s)
- Álvaro Corral
- Centre de Recerca Matemàtica, Edifici C, Campus Bellaterra, E-08193 Barcelona, Spain;
- Departament de Matemàtiques, Facultat de Ciències, Universitat Autònoma de Barcelona, E-08193 Barcelona, Spain
- Barcelona Graduate School of Mathematics, Edifici C, Campus Bellaterra, E-08193 Barcelona, Spain
- Complexity Science Hub Vienna, Josefstädter Straβe 39, 1080 Vienna, Austria
- Correspondence:
| | - Isabel Serra
- Centre de Recerca Matemàtica, Edifici C, Campus Bellaterra, E-08193 Barcelona, Spain;
- Barcelona Supercomputing Center-Centro Nacional de Supercomputación, Jordi Girona 29, E-08034 Barcelona, Spain
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Navas-Portella V, González Á, Serra I, Vives E, Corral Á. Universality of power-law exponents by means of maximum-likelihood estimation. Phys Rev E 2020; 100:062106. [PMID: 31962489 DOI: 10.1103/physreve.100.062106] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Indexed: 11/07/2022]
Abstract
Power-law-type distributions are extensively found when studying the behavior of many complex systems. However, due to limitations in data acquisition, empirical datasets often only cover a narrow range of observation, making it difficult to establish power-law behavior unambiguously. In this work we present a statistical procedure to merge different datasets, with two different aims. First, we obtain a broader fitting range for the statistics of different experiments or observations of the same system. Second, we establish whether two or more different systems may belong to the same universality class. By means of maximum likelihood estimation, this methodology provides rigorous statistical information to discern whether power-law exponents characterizing different datasets can be considered equal among them or not. This procedure is applied to the Gutenberg-Richter law for earthquakes and for synthetic earthquakes (acoustic emission events) generated in the laboratory: labquakes. Different earthquake catalogs have been merged finding a Gutenberg-Richter law holding for more than eight orders of magnitude in seismic moment. The value of the exponent of the energy distribution of labquakes depends on the material used in the compression experiments. By means of the procedure proposed in this manuscript, we find that the Gutenberg-Richter law for earthquakes and charcoal labquakes can be characterized by the same power-law exponent, whereas Vycor labquakes exhibit a significantly different exponent.
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Affiliation(s)
- Víctor Navas-Portella
- Centre de Recerca Matemàtica, Edifici C, Campus Bellaterra, E-08193 Bellaterra, Catalonia, Spain.,Barcelona Graduate School of Mathematics, Edifici C, Campus Bellaterra, E-08193 Barcelona, Spain.,Facultat de Matemàtiques i Informàtica, Universitat de Barcelona, E-08007 Barcelona, Spain
| | - Álvaro González
- Centre de Recerca Matemàtica, Edifici C, Campus Bellaterra, E-08193 Bellaterra, Catalonia, Spain.,GFZ German Research Centre for Geosciences. Telegrafenberg, 14473 Potsdam, Germany
| | - Isabel Serra
- Centre de Recerca Matemàtica, Edifici C, Campus Bellaterra, E-08193 Bellaterra, Catalonia, Spain.,Barcelona Supercomputing Center, Nexus II, 08034 Barcelona, Spain
| | - Eduard Vives
- Departament de Matèria Condensada, Facultat de Física, Universitat de Barcelona, 08028 Barcelona, Catalonia, Spain.,Universitat de Barcelona Institute of Complex Systems (UBICS), Facultat de Física, Universitat de Barcelona, E-08028 Barcelona, Catalonia, Spain
| | - Álvaro Corral
- Centre de Recerca Matemàtica, Edifici C, Campus Bellaterra, E-08193 Bellaterra, Catalonia, Spain.,Barcelona Graduate School of Mathematics, Edifici C, Campus Bellaterra, E-08193 Barcelona, Spain.,Complexity Science Hub Vienna, 1080 Vienna, Austria.,Departament de Matemàtiques, Universitat Autònoma de Barcelona, E-08193 Barcelona, Spain
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5
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Xu Y, Borrego AG, Planes A, Ding X, Vives E. Criticality in failure under compression: Acoustic emission study of coal and charcoal with different microstructures. Phys Rev E 2019; 99:033001. [PMID: 30999452 DOI: 10.1103/physreve.99.033001] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Indexed: 11/07/2022]
Abstract
A systematic study of acoustic emission avalanches in coal and charcoal samples under slow uniaxial compression is presented. The samples exhibit a range of organic composition in terms of chemical elements as well as different degrees of heterogeneity in the microstructure. The experimental analysis focuses on the energies E of the individual acoustic emission events as well as on the time correlations between successive events. The studied samples can be classified into three groups. The more homogeneous samples (group I) with pores in the micro and nanoscales, with signatures of hardening effects in the stress-strain curves, exhibit the cleanest critical power-law behavior for the energy distributions g(E)dE∼E^{-ε}dE with a critical exponent ε=1.4. The more heterogeneous samples with voids, macropores, and granular microstructures (group III), show signatures of weakening effects and a larger effective exponent close to the value ε=1.66, but in some cases truncated by exponential damping factors. The rest of the samples (group II) exhibit a mixed crossover behavior still compatible with an effective exponent ε=1.4 but clearly truncated by exponential factors. These results suggest the existence of two possible universality classes in the failure of porous materials under compression: one for homogeneous samples and another for highly heterogeneous samples. Concerning time correlations between avalanches, all samples exhibit very similar waiting time distributions although some differences for the Omori aftershock distributions cannot be discarded.
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Affiliation(s)
- Yangyang Xu
- State Key Laboratory for Mechanical Behavior of Materials, Xi'an Jiaotong University, Xi'an 710049, China
| | - Angeles G Borrego
- Instituto Nacional del Carbón-CSIC, Fracisco Pintado Fe, 26, 33011 Oviedo, Asturias, Spain
| | - Antoni Planes
- Departament de Física de la Matèria Condensada, Facultat de Física, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Catalonia, Spain.,Institute of Nanoscience and Nanotechnology (IN2UB), Barcelona, Catalonia, Spain
| | - Xiangdong Ding
- State Key Laboratory for Mechanical Behavior of Materials, Xi'an Jiaotong University, Xi'an 710049, China
| | - Eduard Vives
- Departament de Física de la Matèria Condensada, Facultat de Física, Universitat de Barcelona, Martí i Franquès 1, 08028 Barcelona, Catalonia, Spain.,Universitat de Barcelona Institute of Complex Systems (UBICS), Barcelona, Catalonia, Spain
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Curado EMF, Nobre FD, Plastino A. Associating an Entropy with Power-Law Frequency of Events. ENTROPY (BASEL, SWITZERLAND) 2018; 20:E940. [PMID: 33266664 PMCID: PMC7512526 DOI: 10.3390/e20120940] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/03/2018] [Revised: 11/19/2018] [Accepted: 11/23/2018] [Indexed: 11/16/2022]
Abstract
Events occurring with a frequency described by power laws, within a certain range of validity, are very common in natural systems. In many of them, it is possible to associate an energy spectrum and one can show that these types of phenomena are intimately related to Tsallis entropy S q . The relevant parameters become: (i) The entropic index q, which is directly related to the power of the corresponding distribution; (ii) The ground-state energy ε 0 , in terms of which all energies are rescaled. One verifies that the corresponding processes take place at a temperature T q with k T q ∝ ε 0 (i.e., isothermal processes, for a given q), in analogy with those in the class of self-organized criticality, which are known to occur at fixed temperatures. Typical examples are analyzed, like earthquakes, avalanches, and forest fires, and in some of them, the entropic index q and value of T q are estimated. The knowledge of the associated entropic form opens the possibility for a deeper understanding of such phenomena, particularly by using information theory and optimization procedures.
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Affiliation(s)
- Evaldo M. F. Curado
- Centro Brasileiro de Pesquisas Físicas and National Institute of Science and Technology for Complex Systems, Rua Xavier Sigaud 150, Rio de Janeiro 22290-180, Brazil
| | - Fernando D. Nobre
- Centro Brasileiro de Pesquisas Físicas and National Institute of Science and Technology for Complex Systems, Rua Xavier Sigaud 150, Rio de Janeiro 22290-180, Brazil
| | - Angel Plastino
- La Plata National University and Argentina’s National Research Council (IFLP-CCT-CONICET)-C. C. 727, La Plata 1900, Argentina
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