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St-Onge G, Thibeault V, Allard A, Dubé LJ, Hébert-Dufresne L. Master equation analysis of mesoscopic localization in contagion dynamics on higher-order networks. Phys Rev E 2021; 103:032301. [PMID: 33862710 DOI: 10.1103/physreve.103.032301] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Accepted: 01/04/2021] [Indexed: 12/19/2022]
Abstract
Simple models of infectious diseases tend to assume random mixing of individuals, but real interactions are not random pairwise encounters: they occur within various types of gatherings such as workplaces, households, schools, and concerts, best described by a higher-order network structure. We model contagions on higher-order networks using group-based approximate master equations, in which we track all states and interactions within a group of nodes and assume a mean-field coupling between them. Using the susceptible-infected-susceptible dynamics, our approach reveals the existence of a mesoscopic localization regime, where a disease can concentrate and self-sustain only around large groups in the network overall organization. In this regime, the phase transition is smeared, characterized by an inhomogeneous activation of the groups. At the mesoscopic level, we observe that the distribution of infected nodes within groups of the same size can be very dispersed, even bimodal. When considering heterogeneous networks, both at the level of nodes and at the level of groups, we characterize analytically the region associated with mesoscopic localization in the structural parameter space. We put in perspective this phenomenon with eigenvector localization and discuss how a focus on higher-order structures is needed to discern the more subtle localization at the mesoscopic level. Finally, we discuss how mesoscopic localization affects the response to structural interventions and how this framework could provide important insights for a broad range of dynamics.
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Affiliation(s)
- Guillaume St-Onge
- Département de physique, de génie physique et d'optique, Université Laval, Québec (Québec), Canada G1V 0A6.,Centre interdisciplinaire en modélisation mathématique, Université Laval, Québec (Québec), Canada G1V 0A6
| | - Vincent Thibeault
- Département de physique, de génie physique et d'optique, Université Laval, Québec (Québec), Canada G1V 0A6.,Centre interdisciplinaire en modélisation mathématique, Université Laval, Québec (Québec), Canada G1V 0A6
| | - Antoine Allard
- Département de physique, de génie physique et d'optique, Université Laval, Québec (Québec), Canada G1V 0A6.,Centre interdisciplinaire en modélisation mathématique, Université Laval, Québec (Québec), Canada G1V 0A6
| | - Louis J Dubé
- Département de physique, de génie physique et d'optique, Université Laval, Québec (Québec), Canada G1V 0A6.,Centre interdisciplinaire en modélisation mathématique, Université Laval, Québec (Québec), Canada G1V 0A6
| | - Laurent Hébert-Dufresne
- Département de physique, de génie physique et d'optique, Université Laval, Québec (Québec), Canada G1V 0A6.,Vermont Complex Systems Center, University of Vermont, Burlington, Vermont 05405, USA.,Department of Computer Science, University of Vermont, Burlington, Vermont 05405, USA
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Daniels BC, Romanczuk P. Quantifying the impact of network structure on speed and accuracy in collective decision-making. Theory Biosci 2021; 140:379-390. [PMID: 33635501 DOI: 10.1007/s12064-020-00335-1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2019] [Accepted: 12/24/2020] [Indexed: 11/30/2022]
Abstract
Found in varied contexts from neurons to ants to fish, binary decision-making is one of the simplest forms of collective computation. In this process, information collected by individuals about an uncertain environment is accumulated to guide behavior at the aggregate scale. We study binary decision-making dynamics in networks responding to inputs with small signal-to-noise ratios, looking for quantitative measures of collectivity that control performance in this task. We find that decision accuracy is directly correlated with the speed of collective dynamics, which is in turn controlled by three factors: the leading eigenvalue of the network adjacency matrix, the corresponding eigenvector's participation ratio, and distance from the corresponding symmetry-breaking bifurcation. A novel approximation of the maximal attainable timescale near such a bifurcation allows us to predict how decision-making performance scales in large networks based solely on their spectral properties. Specifically, we explore the effects of localization caused by the hierarchical assortative structure of a "rich club" topology. This gives insight into the trade-offs involved in the higher-order structure found in living networks performing collective computations.
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Affiliation(s)
- Bryan C Daniels
- ASU-SFI Center for Biosocial Complex Systems, Arizona State University, Tempe, AZ, USA.
| | - Pawel Romanczuk
- Institute for Theoretical Biology, Department of Biology, Humboldt Universität zu Berlin, Berlin, Germany.,Bernstein Center for Computational Neuroscience, Berlin, Germany
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Wardeh M, Sharkey KJ, Baylis M. Integration of shared-pathogen networks and machine learning reveals the key aspects of zoonoses and predicts mammalian reservoirs. Proc Biol Sci 2020; 287:20192882. [PMID: 32019444 PMCID: PMC7031665 DOI: 10.1098/rspb.2019.2882] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
Abstract
Diseases that spread to humans from animals, zoonoses, pose major threats to human health. Identifying animal reservoirs of zoonoses and predicting future outbreaks are increasingly important to human health and well-being and economic stability, particularly where research and resources are limited. Here, we integrate complex networks and machine learning approaches to develop a new approach to identifying reservoirs. An exhaustive dataset of mammal–pathogen interactions was transformed into networks where hosts are linked via their shared pathogens. We present a methodology for identifying important and influential hosts in these networks. Ensemble models linking network characteristics with phylogeny and life-history traits are then employed to predict those key hosts and quantify the roles they undertake in pathogen transmission. Our models reveal drivers explaining host importance and demonstrate how these drivers vary by pathogen taxa. Host importance is further integrated into ensemble models to predict reservoirs of zoonoses of various pathogen taxa and quantify the extent of pathogen sharing between humans and mammals. We establish predictors of reservoirs of zoonoses, showcasing host influence to be a key factor in determining these reservoirs. Finally, we provide new insight into the determinants of zoonosis-sharing, and contrast these determinants across major pathogen taxa.
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Affiliation(s)
- Maya Wardeh
- Department of Epidemiology and Population Health, Institute of Infection and Global Health, University of Liverpool, Liverpool Science Park IC2 Building, 146 Brownlow Hill, Liverpool L3 5RF, UK
| | - Kieran J Sharkey
- Department of Mathematical Sciences, University of Liverpool, Peach Street, Liverpool L69 7ZL, UK
| | - Matthew Baylis
- Department of Epidemiology and Population Health, Institute of Infection and Global Health, University of Liverpool, Leahurst Campus, Chester High Road, Neston CH64 7TE, UK.,Health Protection Research Unit in Emerging and Zoonotic Infections, University of Liverpool, Liverpool L69 7BE, UK
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