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Desgranges C, Ferrari M, Chaikin PM, Sacanna S, Tuckerman ME, Delhommelle J. Microswimmers under the spotlight: interplay between agents with different levels of activity. SOFT MATTER 2023; 19:7334-7342. [PMID: 37727916 DOI: 10.1039/d3sm00915g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/21/2023]
Abstract
The ability of active matter to assemble into reconfigurable nonequilibrium structures has drawn considerable interest in recent years. We investigate how active fluids respond to spatial light patterns through simulations and experiments on light-activated self-propelled colloidal particles. We examine the processes of inverse templated assembly, which involves creating a region without active particles through a bright pattern, and templated assembly, which promotes the formation of dense particle regions through a dark pattern. We identify scaling relations for the characteristic times for both processes that quantify the interplay between the dimension of the applied pattern and the intrinsic properties of the active fluid. We also explore the assembly mechanism and dynamics of large clusters and show how assembly and inverse assembly can be combined to create any arbitrarily complex template. In addition to providing protocols for templated assembly via light patterning, our results demonstrate how the local packing fraction can be fine-tuned by modulation of the light intensity. The protocol so obtained exceeds the capabilities of conventional assembly strategies, in which packing fraction is dictated by thermodynamics, and opens the door to arbitrarily precise and programmable nonequilibrium assembly strategies in active matter.
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Affiliation(s)
- Caroline Desgranges
- Department of Physics & Applied Physics, University of Massachusetts, Lowell, MA 01854, USA
| | - Melissa Ferrari
- Department of Physics, New York University, 726 Broadway, New York, New York 10003, USA.
| | - Paul M Chaikin
- Department of Physics, New York University, 726 Broadway, New York, New York 10003, USA.
| | - Stefano Sacanna
- Department of Chemistry, New York University (NYU), New York, New York 10003, USA
| | - Mark E Tuckerman
- Department of Physics, New York University, 726 Broadway, New York, New York 10003, USA.
- Department of Chemistry, New York University (NYU), New York, New York 10003, USA
- Courant Institute of Mathematical Sciences, New York University (NYU), New York, New York 10012, USA
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, 3663 Zhongshan Road North, Shanghai 200062, China
- Simons Center for Computational Physical Chemistry at New York University, New York, New York 10003, USA
| | - Jerome Delhommelle
- Department of Chemistry, University of Massachusetts, Lowell, MA 01854, USA.
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Agrawal NK, Mahapatra PS. Alignment-mediated segregation in an active-passive mixture. Phys Rev E 2021; 104:044610. [PMID: 34781473 DOI: 10.1103/physreve.104.044610] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 10/12/2021] [Indexed: 12/19/2022]
Abstract
We report segregation between the athermal active and passive particles mediated by the local alignment interaction in a confined space. The competition between the alignment interaction and self-propulsion force results in a transition between disordered and ordered phases. We show that as the coordination between the particles increases, they form an ordered mill, which helps the particles to aggregate into isotropic clusters. As a result, particles segregate into active core and passive shells. This segregation phenomenon is adversely affected by the packing fraction and the size dispersion between active and passive particles. We show that this adverse effect can be overcome by incorporating higher coordination in the system. We report that the monodispersed system is more desirable for segregation in a binary mixture than a bidispersed system, as the latter favors the mixed state.
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Affiliation(s)
- Naveen Kumar Agrawal
- Department of Mechanical Engineering, Indian Institute of Technology Madras, Chennai 600036, India
| | - Pallab Sinha Mahapatra
- Department of Mechanical Engineering, Indian Institute of Technology Madras, Chennai 600036, India
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Mohapatra S, Mondal S, Mahapatra PS. Spatiotemporal dynamics of a self-propelled system with opposing alignment and repulsive forces. Phys Rev E 2020; 102:042613. [PMID: 33212711 DOI: 10.1103/physreve.102.042613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2020] [Accepted: 10/05/2020] [Indexed: 11/07/2022]
Abstract
Effect of concurrent alignment and repulsion is studied in the purview of a confined active matter system using a modified force-based Vicsek model. On alteration of the alignment and the repulsive force parameters, a low alignment random phase, a midrange alignment milling phase, and a high alignment oscillatory phase are identified. Based on the particle aggregations, the milling phase is further classified into three subphases, two of which are spatial patterns: one consisting of compact ring-shaped mills and the other incorporating both rings and clusters. A correlation function based on the inner product of spatial velocity fluctuations of the particles shows a high correlation length for the ringed milling and the rings-clusters hybrid milling state. On analyzing temporal velocity fluctuations of particles through chaos detection techniques, low alignment and high alignment states are indicative of chaos, while the middle order alignment is symbolic of periodicity. The extent of synchronization of the particles' motion is analyzed through a Hilbert transform-based mean frequency approach, leading to the detection of a weak chimera state in the case of the spatial structures. The ringed milling state shows a unique category of weak chimera consisting of multiple oscillator groups showcasing different synchronization frequencies coexisting with desynchronized oscillators.
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Affiliation(s)
- Siddhant Mohapatra
- Department of Mechanical Engineering, Indian Institute of Technology Madras, Chennai 600036, India
| | - Sirshendu Mondal
- Department of Mechanical Engineering, National Institute of Technology Durgapur, Kolkata 713209, India
| | - Pallab Sinha Mahapatra
- Department of Mechanical Engineering, Indian Institute of Technology Madras, Chennai 600036, India
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Agrawal NK, Mahapatra PS. Effect of particle fraction on phase transitions in an active-passive particles system. Phys Rev E 2020; 101:042607. [PMID: 32422756 DOI: 10.1103/physreve.101.042607] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2019] [Accepted: 03/31/2020] [Indexed: 12/17/2022]
Abstract
We study phase transition in a binary system of monodisperse active and passive particles. The particles are initially randomly positioned inside a fixed boundary square enclosure. The active particles can move with their self-propulsion force. Whereas, the passive particles do not have any self-propulsion force, and they move by the spatial interactions with other particles. An alignment force in our discrete element model causes the emergence of collective milling motion. Without this alignment interaction, the particle system remains in a disordered phase. Whereas, the ordered milling phase is attained after achieving a minimum coordination among neighboring particles. The phase transition from disordered to ordered depends upon the relative effect of self-propulsion and the alignment, initial states of the particles, noise level, and the fraction of the active particles present in the system. The phase transition we observed is of first-order nature.
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Affiliation(s)
- Naveen Kumar Agrawal
- Department of Mechanical Engineering, Indian Institute of Technology Madras, Chennai, India
| | - Pallab Sinha Mahapatra
- Department of Mechanical Engineering, Indian Institute of Technology Madras, Chennai, India
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Tokunaga K, Akiyama R. Molecular dynamics study of a solvation motor in a Lennard-Jones solvent. Phys Rev E 2020; 100:062608. [PMID: 31962405 DOI: 10.1103/physreve.100.062608] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2019] [Indexed: 11/06/2022]
Abstract
The motions of a solvation motor in a Lennard-Jones solvent were calculated by using molecular dynamics simulation. The results were analyzed considering the large spatial scale effects caused by the motion of the solvation motor. A reaction site was located on the surface of the solvation motor and the attraction between the reaction site and the solvent molecules was varied for 100 fs. The motion of the motor was driven by solvation changes near the reaction site on the motor. Two finite-size effects were observed in the motion. One was the hydrodynamic effect and the other was the increase in solvent viscosity caused by heat generation. The latter affected not only the displacement of the motor caused by the reaction but also the wave propagation phenomena. Both effects reduced the motor displacement. Heat generation affects the displacement, in particular for small systems. By contrast, the hydrodynamic effect remained even for large systems. An extrapolation method was proposed for the displacement.
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Affiliation(s)
- Ken Tokunaga
- Division of Liberal Arts, Center for Promotion of Higher Education, Kogakuin University, Nakano machi 2665-1, Hachioji, Tokyo 192-0015, Japan
| | - Ryo Akiyama
- Department of Chemistry, Graduate School of Science, Kyushu University, Motooka 744, Nishi-ku, Fukuoka 819-0395, Japan
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Mohapatra S, Mahapatra PS. Confined System Analysis of a Predator-Prey Minimalistic Model. Sci Rep 2019; 9:11258. [PMID: 31375724 PMCID: PMC6677773 DOI: 10.1038/s41598-019-47603-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2018] [Accepted: 07/18/2019] [Indexed: 11/15/2022] Open
Abstract
In nature exists a properly defined food chain- an order of hunting and getting hunted. One such hunter-hunted pair is considered in this context and coordinated escape manoeuvres in response to predation is studied in case of a rarely examined confined system. Both the predator agent and prey agents are considered to be self-propelled particles moving in a viscous fluid. The state of motility when alive and passivity on death has been accounted for. A novel individual-based combination of Vicsek model and Boids flocking model is used for defining the self-propelling action and inter-agent interactions. The regimes observed at differing levels of co-ordination segregated by quantification of global order parameter are found to be in agreement with the extant literature. This study strives to understand the penalty on the collective motion due to the restraints employed by the rigid walls of the confinement and the predator’s hunting tactics. The success of any escape manoeuvre is dependent on the rate of information transfer and the strength of the agitation at the source of the manoeuvre. The rate of information transfer is studied as a function of co-ordination and the size of the influence zone and the source strength is studied as a function of escape acceleration activated on the agitated prey. The role of these factors in affecting survival rate of prey is given due coverage.
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Affiliation(s)
- Siddhant Mohapatra
- Department of Mechanical Engineering, National Institute of Technology Silchar, Silchar, India
| | - Pallab Sinha Mahapatra
- Department of Mechanical Engineering, Indian Institute of Technology Madras, Chennai, India.
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