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Del Bono LM, Nicoletti F, Ricci-Tersenghi F. The most uniform distribution of points on the sphere. PLoS One 2024; 19:e0313863. [PMID: 39729461 DOI: 10.1371/journal.pone.0313863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2024] [Accepted: 10/31/2024] [Indexed: 12/29/2024] Open
Abstract
How to distribute a set of points uniformly on a spherical surface is a longstanding problem that still lacks a definite answer. In this work, we introduce a physical measure of uniformity based on the distribution of distances between points, as an alternative to commonly adopted measures based on interaction potentials. We then use this new measure of uniformity to characterize several algorithms available in the literature. We also study the effect of optimizing the position of the points through the minimization of different interaction potentials via a gradient descent procedure. In this way, we can classify different algorithms and interaction potentials to find the one that generates the most uniform distribution of points on the sphere.
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Affiliation(s)
| | - Flavio Nicoletti
- Dipartimento di Fisica, Sapienza Università di Roma, Rome, Italy
| | - Federico Ricci-Tersenghi
- Dipartimento di Fisica, Sapienza Università di Roma, Rome, Italy
- CNR-Nanotec, Rome Unit, Rome, Italy
- INFN, Sezione di Roma1, Rome, Italy
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2
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Lei Y, Ni R. Non-equilibrium dynamic hyperuniform states. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2024; 37:023004. [PMID: 39431432 DOI: 10.1088/1361-648x/ad83a0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2024] [Accepted: 10/04/2024] [Indexed: 10/22/2024]
Abstract
Disordered hyperuniform structures are an exotic state of matter having suppressed density fluctuations at large length-scale similar to perfect crystals and quasicrystals but without any long range orientational order. In the past decade, an increasing number of non-equilibrium systems were found to have dynamic hyperuniform states, which have emerged as a new research direction coupling both non-equilibrium physics and hyperuniformity. Here we review the recent progress in understanding dynamic hyperuniform states found in various non-equilibrium systems, including the critical hyperuniformity in absorbing phase transitions, non-equilibrium hyperuniform fluids and the hyperuniform structures in phase separating systems via spinodal decomposition.
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Affiliation(s)
- Yusheng Lei
- School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, 62 Nanyang Drive, Singapore 637459, Singapore
| | - Ran Ni
- School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, 62 Nanyang Drive, Singapore 637459, Singapore
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3
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Gnidovec A, Božič A, Čopar S. Dense packings of geodesic hard ellipses on a sphere. SOFT MATTER 2022; 18:7670-7678. [PMID: 36172841 DOI: 10.1039/d2sm00624c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Packing problems are abundant in nature and have been researched thoroughly both experimentally and in numerical models. In particular, packings of anisotropic, elliptical particles often emerge in models of liquid crystals, colloids, and granular and jammed matter. While most theoretical studies on anisotropic particles have thus far dealt with packings in Euclidean geometry, there are many experimental systems where anisotropically-shaped particles are confined to a curved surface, such as Pickering emulsions stabilized by ellipsoidal particles or protein adsorbates on lipid vesicles. Here, we study random close packing configurations in a two-dimensional model of spherical geodesic ellipses. We focus on the interplay between finite-size effects and curvature that is most prominent at smaller system sizes. We demonstrate that on a spherical surface, monodisperse ellipse packings are inherently disordered, with a non-monotonic dependence of both their packing fraction and the mean contact number on the ellipse aspect ratio, as has also been observed in packings of ellipsoids in both 2D and 3D flat space. We also point out some fundamental differences with previous Euclidean studies and discuss the effects of curvature on our results. Importantly, we show that the underlying spherical surface introduces frustration and results in disordered packing configurations even in systems of monodispersed particles, in contrast to the 2D Euclidean case of ellipse packing. This demonstrates that closed curved surfaces can be effective at introducing disorder in a system and could facilitate the study of monodispersed random packings.
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Affiliation(s)
- Andraž Gnidovec
- University of Ljubljana, Faculty of Mathematics and Physics, SI-1000 Ljubljana, Slovenia.
| | - Anže Božič
- Department of Theoretical Physics, Jožef Stefan Institute, SI-1000 Ljubljana, Slovenia
| | - Simon Čopar
- University of Ljubljana, Faculty of Mathematics and Physics, SI-1000 Ljubljana, Slovenia.
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Carenza LN, Gonnella G, Marenduzzo D, Negro G, Orlandini E. Cholesteric Shells: Two-Dimensional Blue Fog and Finite Quasicrystals. PHYSICAL REVIEW LETTERS 2022; 128:027801. [PMID: 35089738 DOI: 10.1103/physrevlett.128.027801] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2021] [Revised: 09/22/2021] [Accepted: 12/08/2021] [Indexed: 06/14/2023]
Abstract
We study the phase behavior of a quasi-two-dimensional cholesteric liquid crystal shell. We characterize the topological phases arising close to the isotropic-cholesteric transition and show that they differ in a fundamental way from those observed on a flat geometry. For spherical shells, we discover two types of quasi-two-dimensional topological phases: finite quasicrystals and amorphous structures, both made up of mixtures of polygonal tessellations of half-skyrmions. These structures generically emerge instead of regular double twist lattices because of geometric frustration, which disallows a regular hexagonal tiling of curved space. For toroidal shells, the variations in the local curvature of the surface stabilizes heterogeneous phases where cholesteric patterns coexist with hexagonal lattices of half-skyrmions. Quasicrystals and amorphous and heterogeneous structures could be sought experimentally by self-assembling cholesteric shells on the surface of emulsion droplets.
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Affiliation(s)
- L N Carenza
- Dipartimento di Fisica, Università degli Studi di Bari and INFN, Sezione di Bari, via Amendola 173, Bari I-70126, Italy
- Instituut-Lorentz, Universiteit Leiden, P.O. Box 9506, 2300 RA Leiden, Netherlands
| | - G Gonnella
- Dipartimento di Fisica, Università degli Studi di Bari and INFN, Sezione di Bari, via Amendola 173, Bari I-70126, Italy
| | - D Marenduzzo
- SUPA, School of Physics and Astronomy, University of Edinburgh, Peter Guthrie Tait Road, Edinburgh EH9 3FD, United Kingdom
| | - G Negro
- Dipartimento di Fisica, Università degli Studi di Bari and INFN, Sezione di Bari, via Amendola 173, Bari I-70126, Italy
| | - E Orlandini
- Dipartimento di Fisica e Astronomia, Università di Padova and INFN, Sezione di Padova, Via Marzolo 8, 35131 Padova, Italy
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Gnidovec A, Čopar S. Long-range order in quadrupolar systems on spherical surfaces. SOFT MATTER 2021; 17:4874-4883. [PMID: 33890591 DOI: 10.1039/d1sm00228g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The interplay between curvature, confinement and ordering on curved manifolds, with anisotropic interactions between building blocks, takes a central role in many fields of physics. In this paper, we investigate the effects of lattice symmetry and local positional order on orientational ordering in systems of long-range interacting point quadrupoles on a sphere in the zero temperature limit. Locally triangular spherical lattices show long-range ordered quadrupolar configurations only for specific symmetric lattices as strong geometric frustration prevents general global ordering. Conversely, the ground states on Caspar-Klug lattices are more diverse, with many different symmetries depending on the position of quadrupoles within the fundamental domain. We also show that by constraining the quadrupole tilts with respect to the surface normal, which models interactions with the substrate, and by considering general quadrupole tensors, we can manipulate the ground state configuration symmetry.
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Affiliation(s)
- AndraŽ Gnidovec
- University of Ljubljana, Faculty of Mathematics and Physics, SI-1000 Ljubljana, Slovenia.
| | - Simon Čopar
- University of Ljubljana, Faculty of Mathematics and Physics, SI-1000 Ljubljana, Slovenia.
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Javidpour L, BoŽič A, Naji A, Podgornik R. Electrostatic interactions between the SARS-CoV-2 virus and a charged electret fibre. SOFT MATTER 2021; 17:4296-4303. [PMID: 33908595 DOI: 10.1039/d1sm00232e] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
While almost any kind of face mask offers some protection against particles and pathogens of different sizes, the most efficient ones make use of a layered structure where one or more layers are electrically charged. These electret layers are essential for the efficient filtration of difficult-to-capture small particles, yet the exact nature of electrostatic capture with respect to the charge on both the particles and the electret fibres as well as the effect of the immediate environment remain unclear. Here, we explore in detail the electrostatic interactions between the surface of a single charged electret fibre and a model of the SARS-CoV-2 virus. Using Poisson-Boltzmann electrostatics coupled to a detailed spike protein charge regulation model, we show how pH and salt concentration drastically change both the scale and the sign of the interaction. Furthermore, the configuration of the few spike proteins closest to the electret fibre turns out to be as important for the strength of the interaction as their total number on the virus envelope, a direct consequence of spike protein charge regulation. The results of our work elucidate the details of virus electrostatics and contribute to the general understanding of efficient virus filtration mechanisms.
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Affiliation(s)
- Leili Javidpour
- School of Physics, Institute for Research in Fundamental Sciences (IPM), Tehran, 19395-5531, Iran
| | - AnŽe BoŽič
- Department of Theoretical Physics, JoŽef Stefan Institute, SI-1000 Ljubljana, Slovenia
| | - Ali Naji
- School of Physics, Institute for Research in Fundamental Sciences (IPM), Tehran, 19395-5531, Iran and School of Nano Science, Institute for Research in Fundamental Sciences (IPM), Tehran, 19395-5531, Iran
| | - Rudolf Podgornik
- School of Physical Sciences and Kavli Institute for Theoretical Sciences, University of Chinese Academy of Sciences, Beijing 100049, China and Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China. and Wenzhou Institute of the University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325000, China
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Lomba E, Weis JJ, Guisández L, Torquato S. Minimal statistical-mechanical model for multihyperuniform patterns in avian retina. Phys Rev E 2020; 102:012134. [PMID: 32794939 DOI: 10.1103/physreve.102.012134] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Accepted: 06/22/2020] [Indexed: 11/07/2022]
Abstract
Birds are known for their extremely acute sense of vision. The very peculiar structural distribution of five different types of cones in the retina underlies this exquisite ability to sample light. It was recently found that each cone population as well as their total population display a disordered pattern in which long-wavelength density fluctuations vanish [Jiao et al., Phys. Rev. E 89, 022721 (2014)PLEEE81539-375510.1103/PhysRevE.89.022721]. This property, known as hyperuniformity, is also present in perfect crystals. In situations like the avian retina in which both the global structure and that of each component display hyperuniformity, the system is said to be multihyperuniform. In this work, we aim at devising a minimal statistical-mechanical model that can reproduce the main features of the spatial distribution of photoreceptors in avian retina, namely the presence of disorder, multihyperuniformity, and local heterocoordination. This last feature is key to avoiding local clustering of the same type of photoreceptors, an undesirable feature for the efficient sampling of light. For this purpose, we formulate a minimal statistical-mechanical model that definitively exhibits the required structural properties: an equimolar three-component mixture (one component to sample each primary color: red, green, and blue) of nonadditive hard disks to which a long-range logarithmic repulsion is added between like particles. Interestingly, a Voronoi analysis of our idealized system of photoreceptors shows that the space-filling Voronoi polygons display a rather uniform area distribution, symmetrically centered around that of a regular lattice, a structural property also found in human retina. Disordered multihyperuniformity offers an alternative to generate photoreceptor patterns with minimal long-range concentration and density fluctuations. This is the key to overcoming the difficulties in devising an efficient visual system in which crystal-like order is absent.
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Affiliation(s)
- Enrique Lomba
- Instituto de Química Física Rocasolano, CSIC, Calle Serrano 119, E-28006 Madrid, Spain
| | - Jean-Jacques Weis
- Université de Paris-Saclay, Laboratoire de Physique Théorique, Bâtiment 210, 91405 Orsay Cedex, France
| | - Leandro Guisández
- Instituto de Química Física Rocasolano, CSIC, Calle Serrano 119, E-28006 Madrid, Spain.,IFLYSIB (UNLP, CONICET), 59 No. 789, B1900BTE La Plata, Argentina
| | - Salvatore Torquato
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA.,Princeton Institute for the Science and Technology of Materials, Princeton University, Princeton, New Jersey 08544, USA
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Meyra AG, Zarragoicoechea GJ, Maltz AL, Lomba E, Torquato S. Hyperuniformity on spherical surfaces. Phys Rev E 2019; 100:022107. [PMID: 31574707 DOI: 10.1103/physreve.100.022107] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2018] [Indexed: 11/07/2022]
Abstract
We study and characterize local density fluctuations of ordered and disordered hyperuniform point distributions on spherical surfaces. In spite of the extensive literature on disordered hyperuniform systems in Euclidean geometries, to date few works have dealt with the problem of hyperuniformity in curved spaces. Indeed, some systems that display disordered hyperuniformity, like the spatial distribution of photoreceptors in avian retina, actually occur on curved surfaces. Here we will focus on the local particle number variance and its dependence on the size of the sampling window (which we take to be a spherical cap) for regular and uniform point distributions, as well as for equilibrium configurations of fluid particles interacting through Lennard-Jones, dipole-dipole, and charge-charge potentials. We show that the scaling of the local number variance as a function of the window size enables one to characterize hyperuniform and nonhyperuniform point patterns also on spherical surfaces.
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Affiliation(s)
- Ariel G Meyra
- IFLYSIB (UNLP, CONICET), 59 No. 789, B1900BTE La Plata, Argentina.,Instituto de Química Física Rocasolano, CSIC, Calle Serrano 119, E-28006 Madrid, Spain
| | - Guillermo J Zarragoicoechea
- IFLYSIB (UNLP, CONICET), 59 No. 789, B1900BTE La Plata, Argentina.,Comisión de Investigaciones Científicas de la Provincia de Buenos Aires, Argentina
| | - Alberto L Maltz
- Departamento de Matemática, Facultad de Ciencias Exactas, Universidad Nacional de La Plata, CC 72 Correo Central 1900 La Plata, Argentina
| | - Enrique Lomba
- Instituto de Química Física Rocasolano, CSIC, Calle Serrano 119, E-28006 Madrid, Spain
| | - Salvatore Torquato
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA.,Princeton Institute for the Science and Technology of Materials, Princeton University, Princeton, New Jersey 08544, USA
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