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Sun L, Marques MAL, Botti S. Direct insight into the structure-property relation of interfaces from constrained crystal structure prediction. Nat Commun 2021; 12:811. [PMID: 33547276 PMCID: PMC7864966 DOI: 10.1038/s41467-020-20855-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2019] [Accepted: 12/22/2020] [Indexed: 01/30/2023] Open
Abstract
A major issue that prevents a full understanding of heterogeneous materials is the lack of systematic first-principles methods to consistently predict energetics and electronic properties of reconstructed interfaces. In this work we address this problem with an efficient and accurate computational scheme. We extend the minima-hopping method implementing constraints crafted for two-dimensional atomic relaxation and enabling variations of the atomic density close to the interface. A combination of density-functional and accurate density-functional tight-binding calculations supply energy and forces to structure prediction. We demonstrate the power of this method by applying it to extract structure-property relations for a large and varied family of symmetric and asymmetric tilt boundaries in polycrystalline silicon. We find a rich polymorphism in the interface reconstructions, with recurring bonding patterns that we classify in increasing energetic order. Finally, a clear relation between bonding patterns and electrically active grain boundary states is unveiled and discussed.
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Affiliation(s)
- Lin Sun
- Institut für Festkörpertheorie und -optik, Friedrich-Schiller-Universität Jena, Jena, Germany
| | - Miguel A L Marques
- Institut für Physik, Martin-Luther-Universität Halle-Wittenberg, Halle, Germany
- European Theoretical Spectroscopy Facility
| | - Silvana Botti
- Institut für Festkörpertheorie und -optik, Friedrich-Schiller-Universität Jena, Jena, Germany.
- European Theoretical Spectroscopy Facility, .
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2
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Scheurer M, Dreuw A, Epifanovsky E, Head-Gordon M, Stauch T. Modeling Molecules under Pressure with Gaussian Potentials. J Chem Theory Comput 2021; 17:583-597. [PMID: 33350311 DOI: 10.1021/acs.jctc.0c01212] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
The computational modeling of molecules under high pressure is a growing research area that augments experimental high-pressure chemistry. Here, a new electronic structure method for modeling atoms and molecules under pressure, Gaussians On Surface Tesserae Simulate HYdrostatic Pressure (GOSTSHYP) approach, is introduced. In this method, a set of Gaussian potentials is distributed evenly on the van der Waals surface of the investigated chemical system, leading to a compression of the electron density and the atomic scaffold. Since no parameters other than pressure need to be specified, GOSTSHYP allows straightforward geometry optimizations and ab initio molecular dynamics simulations of chemical systems under pressure for nonexpert users. Calculated energies, bond lengths, and dipole moments under pressure fall within the range of established computational methods for high-pressure chemistry. A Diels-Alder reaction and the cyclotrimerization of acetylene showcase the ability of GOSTSHYP to model pressure-induced chemical reactions. The connection to mechanochemistry is pointed out.
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Affiliation(s)
- Maximilian Scheurer
- Interdisciplinary Center for Scientific Computing, Heidelberg University, D-69120 Heidelberg, Germany
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing, Heidelberg University, D-69120 Heidelberg, Germany
| | - Evgeny Epifanovsky
- Q-Chem Inc., 6601 Owens Dr, Suite 105, Pleasanton, California 94588, United States
| | - Martin Head-Gordon
- Pitzer Center for Theoretical Chemistry, University of California, Berkeley, South Dr, Berkeley, California 94720, United States.,Chemical Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, Berkeley, California 94720, United States
| | - Tim Stauch
- Institute for Physical and Theoretical Chemistry, University of Bremen, Leobener Str. NW2, D-28359 Bremen, Germany.,Bremen Center for Computational Materials Science, University of Bremen, Am Fallturm 1, D-28359 Bremen, Germany.,MAPEX Center for Materials and Processes, University of Bremen, Bibliothekstr. 1, D-28359 Bremen, Germany
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Marques MRG, Wolff J, Steigemann C, Marques MAL. Neural network force fields for simple metals and semiconductors: construction and application to the calculation of phonons and melting temperatures. Phys Chem Chem Phys 2019; 21:6506-6516. [PMID: 30843548 DOI: 10.1039/c8cp05771k] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
We present a practical procedure to obtain reliable and unbiased neural network based force fields for solids. Training and test sets are efficiently generated from global structural prediction runs, at the same time assuring the structural variety and importance of sampling the relevant regions of phase space. The neural networks are trained to yield not only good formation energies, but also accurate forces and stresses, which are the quantities of interest for molecular dynamics simulations. Finally, we construct, as an example, several force fields for both semiconducting and metallic elements, and prove their accuracy for a variety of structural and dynamical properties. These are then used to study the melting of bulk copper and gold.
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Affiliation(s)
- Mário R G Marques
- Institut für Physik, Martin-Luther-Universität Halle-Wittenberg, D-06120 Halle (Saale), Germany.
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Shi J, Cerqueira TFT, Cui W, Nogueira F, Botti S, Marques MAL. High-throughput search of ternary chalcogenides for p-type transparent electrodes. Sci Rep 2017; 7:43179. [PMID: 28266587 PMCID: PMC5339873 DOI: 10.1038/srep43179] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2016] [Accepted: 01/19/2017] [Indexed: 11/16/2022] Open
Abstract
Delafossite crystals are fascinating ternary oxides that have demonstrated transparent conductivity and ambipolar doping. Here we use a high-throughput approach based on density functional theory to find delafossite and related layered phases of composition ABX2, where A and B are elements of the periodic table, and X is a chalcogen (O, S, Se, and Te). From the 15 624 compounds studied in the trigonal delafossite prototype structure, 285 are within 50 meV/atom from the convex hull of stability. These compounds are further investigated using global structural prediction methods to obtain their lowest-energy crystal structure. We find 79 systems not present in the materials project database that are thermodynamically stable and crystallize in the delafossite or in closely related structures. These novel phases are then characterized by calculating their band gaps and hole effective masses. This characterization unveils a large diversity of properties, ranging from normal metals, magnetic metals, and some candidate compounds for p-type transparent electrodes.
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Affiliation(s)
- Jingming Shi
- Institut Lumière Matière, UMR5306 Universitè Lyon 1-CNRS, Universitè de Lyon, F-69622 Villeurbanne Cedex, France
| | - Tiago F T Cerqueira
- Institut für Festkörpertheorie und -optik and ETSF, Friedrich-Schiller-Universität Jena, Max-Wien-Platz 1, 07743 Jena, Germany
| | - Wenwen Cui
- Institut Lumière Matière, UMR5306 Universitè Lyon 1-CNRS, Universitè de Lyon, F-69622 Villeurbanne Cedex, France
| | - Fernando Nogueira
- CFisUC, Department of Physics, University of Coimbra, 3004-516, Portugal
| | - Silvana Botti
- Institut für Festkörpertheorie und -optik and ETSF, Friedrich-Schiller-Universität Jena, Max-Wien-Platz 1, 07743 Jena, Germany
| | - Miguel A L Marques
- Institut für Physik, Martin-Luther-Universität Halle-Wittenberg, D-06099 Halle, Germany
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Stevanović V. Sampling Polymorphs of Ionic Solids using Random Superlattices. PHYSICAL REVIEW LETTERS 2016; 116:075503. [PMID: 26943545 DOI: 10.1103/physrevlett.116.075503] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2015] [Indexed: 06/05/2023]
Abstract
Polymorphism offers rich and virtually unexplored space for discovering novel functional materials. To harness this potential approaches capable of both exploring the space of polymorphs and assessing their realizability are needed. One such approach devised for partially ionic solids is presented. The structure prediction part is carried out by performing local density functional theory relaxations on a large set of random supperlattices (RSLs) with atoms distributed randomly over different planes in a way that favors cation-anion coordination. Applying the RSL sampling on MgO, ZnO, and SnO_{2} reveals that the resulting probability of occurrence of a given structure offers a measure of its realizability explaining fully the experimentally observed, metastable polymorphs in these three systems.
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Affiliation(s)
- Vladan Stevanović
- Colorado School of Mines, Golden, Colorado 80401, USA
- National Renewable Energy Laboratory, Golden, Colorado 80401, USA
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Cerqueira TFT, Sarmiento-Pérez R, Amsler M, Nogueira F, Botti S, Marques MAL. Materials Design On-the-Fly. J Chem Theory Comput 2015; 11:3955-60. [DOI: 10.1021/acs.jctc.5b00212] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tiago F. T. Cerqueira
- Institut
für Festkörpertheorie und -optik, Friedrich-Schiller-Universität Jena and European Theoretical Spectroscopy Facility, Max-Wien-Platz 1, 07743 Jena, Germany
- Institut
Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, F-69622 Cedex Villeurbanne, France
| | - Rafael Sarmiento-Pérez
- Institut
für Festkörpertheorie und -optik, Friedrich-Schiller-Universität Jena and European Theoretical Spectroscopy Facility, Max-Wien-Platz 1, 07743 Jena, Germany
- Institut
Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, F-69622 Cedex Villeurbanne, France
| | - Maximilian Amsler
- Department
of Physics, Universität Basel, Klingelbergstrasse 82, 4056 Basel, Switzerland
| | - F. Nogueira
- Centro
de Física Computacional, Departamento de Física, Universidade de Coimbra, Rua Larga, 3004-516 Coimbra, Portugal
| | - Silvana Botti
- Institut
für Festkörpertheorie und -optik, Friedrich-Schiller-Universität Jena and European Theoretical Spectroscopy Facility, Max-Wien-Platz 1, 07743 Jena, Germany
- Institut
Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, F-69622 Cedex Villeurbanne, France
| | - Miguel A. L. Marques
- Institut
Lumière Matière, UMR5306 Université Lyon 1-CNRS, Université de Lyon, F-69622 Cedex Villeurbanne, France
- Institut
für Physik, Martin-Luther-Universität Halle-Wittenberg, D-06099 Halle, Germany
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Baldwin AF, Huan TD, Ma R, Mannodi-Kanakkithodi A, Tefferi M, Katz N, Cao Y, Ramprasad R, Sotzing GA. Rational Design of Organotin Polyesters. Macromolecules 2015. [DOI: 10.1021/ma502424r] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Aaron F. Baldwin
- Polymer Program, University of Connecticut, 97 North Eagleville Road, Storrs, Connecticut 06269, United States
| | - Tran Doan Huan
- Department of Materials Science and Engineering, University of Connecticut, 97 North Eagleville Road, Storrs, Connecticut 06269, United States
| | - Rui Ma
- Polymer Program, University of Connecticut, 97 North Eagleville Road, Storrs, Connecticut 06269, United States
| | - Arun Mannodi-Kanakkithodi
- Department of Materials Science and Engineering, University of Connecticut, 97 North Eagleville Road, Storrs, Connecticut 06269, United States
| | - Mattewos Tefferi
- Department of Electrical and Computer Engineering, University of Connecticut, 97 North Eagleville Road, Storrs, Connecticut 06269, United States
| | - Nathan Katz
- Polymer Program, University of Connecticut, 97 North Eagleville Road, Storrs, Connecticut 06269, United States
| | - Yang Cao
- Department of Electrical and Computer Engineering, University of Connecticut, 97 North Eagleville Road, Storrs, Connecticut 06269, United States
| | - Rampi Ramprasad
- Department of Materials Science and Engineering, University of Connecticut, 97 North Eagleville Road, Storrs, Connecticut 06269, United States
| | - Gregory A. Sotzing
- Polymer Program, University of Connecticut, 97 North Eagleville Road, Storrs, Connecticut 06269, United States
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Zurek E, Grochala W. Predicting crystal structures and properties of matter under extreme conditions via quantum mechanics: the pressure is on. Phys Chem Chem Phys 2015; 17:2917-34. [DOI: 10.1039/c4cp04445b] [Citation(s) in RCA: 86] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The role of quantum mechanical calculations in understanding and predicting the behavior of matter at extreme pressures is discussed in this feature contribution.
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Affiliation(s)
- Eva Zurek
- Department of Chemistry
- State University of New York at Buffalo
- Buffalo
- USA
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Tran HD, Amsler M, Botti S, Marques MAL, Goedecker S. First-principles predicted low-energy structures of NaSc(BH4)4. J Chem Phys 2014; 140:124708. [DOI: 10.1063/1.4869194] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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