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Michaud A, Leda M, Swider ZT, Kim S, He J, Landino J, Valley JR, Huisken J, Goryachev AB, von Dassow G, Bement WM. A versatile cortical pattern-forming circuit based on Rho, F-actin, Ect2, and RGA-3/4. J Cell Biol 2022; 221:213290. [PMID: 35708547 PMCID: PMC9206115 DOI: 10.1083/jcb.202203017] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 05/09/2022] [Accepted: 05/30/2022] [Indexed: 01/16/2023] Open
Abstract
Many cells can generate complementary traveling waves of actin filaments (F-actin) and cytoskeletal regulators. This phenomenon, termed cortical excitability, results from coupled positive and negative feedback loops of cytoskeletal regulators. The nature of these feedback loops, however, remains poorly understood. We assessed the role of the Rho GAP RGA-3/4 in the cortical excitability that accompanies cytokinesis in both frog and starfish. RGA-3/4 localizes to the cytokinetic apparatus, “chases” Rho waves in an F-actin–dependent manner, and when coexpressed with the Rho GEF Ect2, is sufficient to convert the normally quiescent, immature Xenopus oocyte cortex into a dramatically excited state. Experiments and modeling show that changing the ratio of RGA-3/4 to Ect2 produces cortical behaviors ranging from pulses to complex waves of Rho activity. We conclude that RGA-3/4, Ect2, Rho, and F-actin form the core of a versatile circuit that drives a diverse range of cortical behaviors, and we demonstrate that the immature oocyte is a powerful model for characterizing these dynamics.
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Affiliation(s)
- Ani Michaud
- Cellular and Molecular Biology Graduate Program, University of Wisconsin-Madison, Madison, WI.,Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI
| | - Marcin Leda
- Center for Synthetic and Systems Biology, University of Edinburgh, Edinburgh, UK
| | - Zachary T Swider
- Cellular and Molecular Biology Graduate Program, University of Wisconsin-Madison, Madison, WI.,Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI
| | - Songeun Kim
- Cellular and Molecular Biology Graduate Program, University of Wisconsin-Madison, Madison, WI.,Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI
| | - Jiaye He
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI.,Morgridge Institute for Research, University of Wisconsin-Madison, Madison, WI
| | - Jennifer Landino
- Department of Molecular, Cellular, and Developmental Biology, University of Michigan-Ann Arbor, Ann Arbor, MI
| | - Jenna R Valley
- Oregon Institute of Marine Biology, University of Oregon, Charleston, OR
| | - Jan Huisken
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI.,Morgridge Institute for Research, University of Wisconsin-Madison, Madison, WI
| | - Andrew B Goryachev
- Center for Synthetic and Systems Biology, University of Edinburgh, Edinburgh, UK
| | - George von Dassow
- Oregon Institute of Marine Biology, University of Oregon, Charleston, OR
| | - William M Bement
- Center for Quantitative Cell Imaging, University of Wisconsin-Madison, Madison, WI.,Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI
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Menzel KO, Arp O, Piel A. Frequency clusters and defect structures in nonlinear dust-density waves under microgravity conditions. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 83:016402. [PMID: 21405779 DOI: 10.1103/physreve.83.016402] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2010] [Revised: 11/24/2010] [Indexed: 05/30/2023]
Abstract
Density waves in a dusty plasma emerge spontaneously at low gas pressures and high dust densities. These acousticlike wave modes were studied in a radio-frequency discharge under microgravity conditions. The complex three-dimensional wave pattern shows a spatially varying wavelength that leads to bifurcations, i.e., topological defects, where wave fronts split or merge. The calculation of instantaneous wave attributes from the spatiotemporal evolution of the dust density allows a precise analysis of those structures. Investigations of the spatial frequency distribution inside the wave field revealed that the wave frequency decreases from the bulk to the edge of the cloud in terms of frequency jumps. Between those jumps, regions of almost constant frequency appear. The formation of frequency clusters is strongly correlated with defects that occur exclusively at the cluster boundaries. It is shown that the nonlinearity of the waves has a significant influence on the topology of the wave pattern.
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Affiliation(s)
- K O Menzel
- Institut für Experimentelle und Angewandte Physik, Christian-Albrechts-Universiät, D-24098 Kiel, Germany.
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Toscano F, Kenfack A, Carvalho AR, Rost JM, Ozorio de Almeida AM. Husimi–Wigner representation of chaotic eigenstates. Proc Math Phys Eng Sci 2008. [DOI: 10.1098/rspa.2007.0263] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Just as a coherent state may be considered as a quantum point, its restriction to a factor space of the full Hilbert space can be interpreted as a quantum plane. The overlap of such a factor coherent state with a full pure state is akin to a quantum section. It defines a reduced pure state in the cofactor Hilbert space. Physically, this factorization corresponds to the description of interacting components of a quantum system with many degrees of freedom and the sections could be generated by conceivable partial measurements.
The collection of all the Wigner functions corresponding to a full set of parallel quantum sections defines the Husimi–Wigner representation. It occupies an intermediate ground between the drastic suppression of non-classical features, characteristic of Husimi functions, and the daunting complexity of higher dimensional Wigner functions. After analysing these features for simpler states, we exploit this new representation as a probe of numerically computed eigenstates of a chaotic Hamiltonian. Though less regular, the individual two-dimensional Wigner functions resemble those of semiclassically quantized states.
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Affiliation(s)
- Fabricio Toscano
- Fundação Centro de Ciências e Educação Superior a Distância do Estado do Rio de Janeiro20943-001 Rio de Janeiro, RJ, Brazil
- Instituto de Física, Universidade Federal do Rio de JaneiroCaixa Postal 68528, 21941-972 Rio de Janeiro, RJ, Brazil
| | - Anatole Kenfack
- Max-Planck-Institut für Physik Komplexer SystemeNöthnitzer Strasse 38, 01187 Dresden, Germany
| | - Andre R.R Carvalho
- Department of Physics, Faculty of Science, The Australian National UniversityCanberra, ACT 0200, Australia
| | - Jan M Rost
- Max-Planck-Institut für Physik Komplexer SystemeNöthnitzer Strasse 38, 01187 Dresden, Germany
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Cros A, Le Gal P. Defect turbulence in a spiral wave pattern in the torsional Couette flow. Phys Rev E 2004; 70:016309. [PMID: 15324171 DOI: 10.1103/physreve.70.016309] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2004] [Indexed: 11/07/2022]
Abstract
Our experimental study is devoted to the transition to defect turbulence of a periodic spiral wave pattern occurring in the flow between a rotating and a stationary disk. As the rotation rate Omega of the disk is increased, the radial phase velocity of the waves changes its sign: The waves that propagate first outward on average, then become stationary and finally propagate inward. As they become stationary, the nucleation of topological defects breaks the periodicity of the pattern. For higher Omega, more and more defects are generated in the flow pattern. This article presents the statistical study of this defect mediated turbulence.
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Affiliation(s)
- A Cros
- Institut de Recherche sur les Phénomènes Hors Equilibre, UMR 6594, CNRS, and Universités d'Aix-Marseille I et II, 49 rue F. Joliot-Curie, BP 146, Technopôle de Château-Gombert, 13384 Marseille Cédex 13, France
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Aegerter CM, Surko CM. Effects of lateral boundaries on traveling-wave dynamics in binary fluid convection. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2001; 63:046301. [PMID: 11308939 DOI: 10.1103/physreve.63.046301] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2000] [Indexed: 05/23/2023]
Abstract
The global dynamics of traveling-wave patterns in convection in a mixture of ethanol in water is studied in different cell geometries: circular, rectangular, and stadium-shaped cells. The dynamics in these cells differ greatly, changing from a globally rotating state in the circular cell, to one large domain of locally parallel traveling waves in the rectangular cell, to a continually chaotic state in the stadium cell. In all three cases, the patterns can be described in terms of the phase of the complex order parameter. Disorder in the patterns is quantified in terms of topological defects in the phase field. While the numbers, net charge, and dynamics of defects differ greatly in the patterns in the three cells, the local dynamics of the defects, as measured by the defect-defect correlation functions, are similar.
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Affiliation(s)
- C M Aegerter
- Department of Physics 0319, University of California-San Diego, La Jolla, CA 92093, USA
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He K. Critical behavior of crisis-induced transition to spatiotemporal chaos in parameter space. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2001; 63:016218. [PMID: 11304346 DOI: 10.1103/physreve.63.016218] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2000] [Revised: 09/21/2000] [Indexed: 05/23/2023]
Abstract
In previous works we reported a transition mechanism from a temporal chaos (TC) to spatiotemporal chaos (STC) through a crisis due to a collision to a saddle steady wave (SSW). However, the transition also displays as a critical phenomenon in parameter space. In the present work the time variations of mode interaction energy, deltaE(I)(k)(t), of the perturbation wave (PW) with its carrier SSW are calculated. In the TC state in all the dimensions the motion is dominated by negative deltaE(I)(k)(t). With variation of the parameter in one dimension deltaE(I)(k=1)(t) becomes smaller and smaller while statistically more balanced in its negative and positive values. The critical parameter point for the crisis is right at the place where the time-averaged negative and positive deltaE(I)(k=1)(t) are equal. A power-law behavior is observed when approaching to the point. After the crisis in the STC state the motion with positive deltaE(I)(k=1)(t) suddenly becomes much stronger than that with negative ones. In addition, it is shown that stable orbit of the SSW is a boundary of the PW motion, it behaves like a potential well that constrains the PW motion.
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Affiliation(s)
- K He
- CCAST (World Laboratory), 8730 Beijing, 100080 China
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Bezryadin A, Westervelt RM, Tinkham M. Evolution of avalanche conducting states in electrorheological liquids. PHYSICAL REVIEW. E, STATISTICAL PHYSICS, PLASMAS, FLUIDS, AND RELATED INTERDISCIPLINARY TOPICS 1999; 59:6896-902. [PMID: 11969677 DOI: 10.1103/physreve.59.6896] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/1998] [Indexed: 04/18/2023]
Abstract
Charge transport in electrorheological fluids is studied experimentally under strongly nonequilibrium conditions. By injecting an electrical current into a suspension of conducting nanoparticles we are able to initiate a process of self-organization which leads, in certain cases, to formation of a stable pattern which consists of continuous conducting chains of particles. The evolution of the dissipative state in such a system is a complex process. It starts as an avalanche process characterized by nucleation, growth, and thermal destruction of such dissipative elements as continuous conducting chains of particles as well as electroconvective vortices. A power-law distribution of avalanche sizes and durations, observed at this stage of the evolution, indicates that the system is in a self-organized critical state. A sharp transition into an avalanche-free state with a stable pattern of conducting chains is observed when the power dissipated in the fluid reaches its maximum. We propose a simple evolution model which obeys the maximum power condition and also shows a power-law distribution of the avalanche sizes.
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Affiliation(s)
- A Bezryadin
- Department of Physics, Division of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138, USA
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