Spiral Wave Formation in Three-Dimensional Excitable Media

Mechanism and Phenomenology of an Oscillating Chemical Reaction

Chemical reactions, which are far from equilibrium, are capable of displaying oscillations in species concentrations and hence in colour, electrode potential, pH and/or temperature. The oscillations arise from the interplay between positive and negative kinetic feedback. Mechanisms for such reactions are presented, along with the rich phenomenology that these systems exhibit, from complex oscillations and chemical waves, to stationary concentration patterns. This review will focus on the Belousov-Zhabotinksy reaction but reference to other reactions will be made where appropriate.

The Tris(2,2'-Bipyridyl)Ruthenium-Catalysed Belousov–Zhabotinsky Reaction

The Belousov – Zhabotinsky (BZ) reaction is the prototypical oscillating chemical reaction. The tris(2,2'-bipyridine)ruthenium-catalysed BZ reaction (often simply referred to as the ruthenium-catalysed BZ reaction) displays photosensitivity and has been widely exploited for examination of the effects of illumination on nonlinear reaction kinetics. In this review, we investigate the behaviour of the ruthenium-catalysed BZ reaction. The mechanism of the reaction is analysed and we examine how light sensitivity is incorporated into kinetic models of the reaction. The temporal dynamics of the photosensitive reaction is presented and, finally, we discuss the extraordinary wealth of behaviour that has been observed in the spatially-distributed system when perturbed by visible light.

Propagating Precipitation Waves in Disordered Media

The study presented in this paper investigates form changes of propagating waves generated through precipitation reactions in a gel matrix that possesses an inhomogeneous microstructure. The waves demonstrate form changes from a single ring-like pattern to multiple target-like waves. Subsequently, the waves take up a spiral form and ultimately manifest themselves in the form of a turbulence pattern that intensifies with increasing fluctuations within the gel structure. An investigation into the dynamics of the precipitation waves reveals the existence of an anomalous diffusion. The effective diffusion coefficients are found to increase linearly with the quenching temperature. Further, it is revealed through the analysis of the anomalous diffusion dynamics that precipitation patterns could be adequately controlled by adjusting the permeability fluctuations within the gel structure. The findings of this study lead to a greater understanding of the spontaneous creation of precipitation patterns by a system driven by disorder.

A novel technique to initiate and investigate scroll waves in thin layers of the photosensitive Belousov-Zhabotinsky reaction

While free scroll rings are non-stationary objects that either grow or contract with time, spatial confinement can have a large impact on their evolution reaching from significant lifetime extension (J.F. Totz, H. Engel, O. Steinbock, New J. Phys. 17, 093043 (2015)) up to formation of stable stationary and breathing pacemakers (A. Azhand, J.F. Totz, H. Engel, EPL 108, 10004 (2014)). Here, we explore the parameter range in which the interaction between an axis-symmetric scroll ring and a confining planar no-flux boundary can be studied experimentally in transparent gel layers supporting chemical wave propagation in the photosensitive variant of the Belousov-Zhabotinsky medium. Based on full three-dimensional simulations of the underlying modified complete Oregonator model for experimentally realistic parameters, we determine the conditions for successful initiation of scroll rings in a phase diagram spanned by the layer thickness and the applied light intensity. Furthermore, we discuss whether the illumination-induced excitability gradient due to Lambert-Beer's law as well as a possible inclination of the filament plane with respect to the no-flux boundary can destabilize the scroll ring.

Response of a chemical wave to local pulse irradiation in the ruthenium-catalyzed Belousov-Zhabotinsky reaction

The photo-sensitive Belousov-Zhabotinsky (BZ) reaction system was investigated to understand the response of wave propagation to local pulse stimulation in an excitable field. When the chemical wave was irradiated with a bright pulse or a dark pulse, the speed of wave propagation decreased or increased. The timing of pulse irradiation that significantly affected the speed of chemical wave propagation was different with the bright and dark pulses. That is, there is a sensitive point in the chemical wave. The experimental results were qualitatively reproduced by a numerical calculation based on a three-variable Oregonator model that was modified for the photosensitive BZ reaction. These results suggest that the chemical wave is sensitive to the timing of pulse irradiation due to the rates of production of an activator and an inhibitor in the photochemical reaction.

Mechanism of spiral formation in heterogeneous discretized excitable media

Spiral waves on excitable media strongly influence the functions of living systems in both a positive and negative way. The spiral formation mechanism has thus been one of the major themes in the field of reaction-diffusion systems. Although the widely believed origin of spiral waves is the interaction of traveling waves, the heterogeneity of an excitable medium has recently been suggested as a probable cause. We suggest one possible origin of spiral waves using a Belousov-Zhabotinsky reaction and a discretized FitzHugh-Nagumo model. The heterogeneity of the reaction field is shown to stochastically generate unidirectional sites, which can induce spiral waves. Furthermore, we found that the spiral wave vanished with only a small reduction in the excitability of the reaction field. These results reveal a gentle approach for controlling the appearance of a spiral wave on an excitable medium.

Scroll wave meandering induced by phase difference in a three-dimensional excitable medium

We investigated scroll waves in an inhomogeneous excitable 3D system with gradient of excitability. The gradient promotes twisting of the scroll waves. Sufficiently large excitability gradient enhances the twisting and causes simple scroll waves to transition to meandering scroll waves. For the twist-induced instability of scroll waves, we analyzed the stability of 2D spiral waves sliced from the twisted scroll in the vertical direction. The 3D problem is simplified by taking into account the diffusive coupling in the third direction as a time-delayed perturbation to the 2D spiral wave. An additional "negative mass" term measuring the twist thus arises in the 2D system and induces the transition from simple rotation to meandering. A further increase in the gradient ruins partially the unity of the meandering scrolls and generates semiturbulence, the analogs of which were observed in the Belousov-Zhabotinski reaction. We also generated the phase diagram in the parameter space by adjusting the threshold for excitation of the media.

Three-dimensional spiral waves in an excitable reaction system: initiation and dynamics of scroll rings and scroll ring pairs

We report experimental results on spiral and scroll waves in the 1,4-cyclohexanedione Belousov-Zhabotinsky reaction. The propagating concentration waves are detected by two-dimensional photometry and optical tomography. Wave pulses can disappear in front-to-front and front-to-back collisions. This anomaly causes the nucleation of vortices from collisions of three nonrotating waves. In three-dimensional systems, these vortices are scroll rings that rotate around initially circular filaments. Depending on reactant concentrations, the filaments shrink or expand indicating positive and negative filament tensions, respectively. Shrinkage results in vortex annihilation. Expansion is accompanied by filament buckling and bending, which is interpreted as developing Winfree turbulence. We also describe the initiation of scroll ring pairs in four-wave collisions. The two filaments are stacked on top of each other and their motion suggests filament repulsion.

Survival versus collapse: abrupt drop of excitability kills the traveling pulse, while gradual change results in adaptation

Excitable media show changes in their basic characteristics that reflect temporal changes in the environment. In the photosensitive Belousov-Zhabotinsky (BZ) reaction, excitability is decreased by illumination. We found that a traveling pulse failed to propagate when a certain level of light intensity was switched on abruptly, but the pulse continued propagating when the light intensity reached the same level gradually. We investigated the mechanism of adaptation of pulse propagation to the change in light intensity using two mathematical models, the Oregonator model (a specific model for the photosensitive BZ reaction), and the FitzHugh-Nagumo model (a generic model for excitable media). The appearance of a characteristic such as adaptation is shown to be a general feature for a traveling pulse in excitable media.

Characteristic Features in the Collision of Chemical Waves Depending on the Aspect Ratio of a Rectangular Field

The photosensitive Belousov-Zhabotinsky (BZ) reaction was investigated on a double rectangular field composed of two rectangular routes, which was drawn using computer software and then projected using a liquid-crystal projector on a filter paper soaked with BZ solution. When two chemical waves were generated on the rectangular routes as the initial condition, the nature of the collision of the waves could be theoretically classified into four categories depending on the initial phase difference between the two waves and the aspect ratio of the rectangular routes. The experimental results were consistent with the features of the theoretical prediction. These results suggest that the feature of wave propagation characteristically develops depending on the geometry of the excitable fields.

Coexistence of Wave Propagation and Oscillation in the Photosensitive Belousov−Zhabotinsky Reaction on a Circular Route

The photosensitive Belousov-Zhabotinsky (BZ) reaction was investigated on a circular ring, which was drawn using computer software and then projected on a film soaked with BZ solution using a liquid-crystal projector. Under the initial conditions, a chemical wave propagated with a constant velocity on the black ring under a bright background. When the background was rapidly changed to dark, coexistence of the oscillation on part of the ring and propagation of the chemical wave on the other part was observed. These experimental results are discussed in relation to the nature of the photosensitive BZ reaction and theoretically reproduced based on a reaction-diffusion system using the modified Oregonator model.

Interactive Propagation of Photosensitive Chemical Waves on Two Circular Routes

The propagation of chemical waves in the photosensitive Belousov-Zhabotinsky (BZ) reaction was investigated using an excitable field composed of two rings in slight contact, which were drawn using computer software and then projected on a film soaked with BZ solution using a liquid-crystal projector. When the initial phase difference between the two chemical waves in the individual rings was smaller than a critical value, this initial value was maintained after collision of the chemical waves. However, when the initial phase difference was larger than this critical value, the phase difference converged to the same value after the second collision. The critical value increased with an increase in the thickness of the rings. These experimental results on the geometry of the excitable field are discussed in relation to the nature of chemical wave propagation. These results suggest that the photosensitive BZ reaction may be useful for creating spatiotemporal patterns that depend on the geometric arrangement of excitable fields.

Direction detector on an excitable field: field computation with coincidence detection

Living organisms process information without any central control unit and without any ruling clock. We have been studying a novel computational strategy that uses a geometrically arranged excitable field, i.e., "field computation." As an extension of this research, in the present article we report the construction of a "direction detector" on an excitable field. Using a numerical simulation, we show that the direction of a input source signal can be detected by applying the characteristic as a "coincidence detector" embedded on an excitable field. In addition, we show that this direction detection actually works in an experiment using an excitable chemical system. These results are discussed in relation to the future development of "field computation."

Pattern selection in a cooperative biochemical in vitro amplification system: the role of parasites

Previously, numerical simulations have shown that evolving systems can be stabilized against emerging parasites by pattern formation in spatially extended flow reactors. Hence, it can be argued that pattern formation is a prerequisite for any experimental investigation of the biochemical evolution of cooperative function. Here, we study a model of an experimental biochemical system for the cooperative in vitro amplification of DNA strands and show that emerging parasites can induce a complex pattern formation even when no pattern formation occurs without parasites. In an adiabatic approximation where the cooperative amplification reaction is assumed to adapt fast to slowly emerging parasites, the parasite concentration itself acts as a Steuer parameter for the selection of various complex patterns. Without such an adiabatic approximation only transient patterns emerge. As any species can grow for very low concentrations, the parasite is able to infect the entire reactor and the system is finally diluted out. In the experimental biochemical system, however, the species are individual molecules and the growth of spatially separated, non-infected regions becomes feasible. Hence a cutoff threshold for the minimal concentration is applied. In these simulations the otherwise lethal infection by parasites induces the formation of spatiotemporal spirals, and this spatial structure help the host and parasitoid species to survive together. These theoretical results describe an inherent property of cooperative reactions and have an important impact on experimental investigations on the molecular evolution and complex function in spatially extended reactors. Since the formation of the complex pattern is restricted either to a rather large cutoff value or a special choice of the kinetic parameters, we, however, conclude that the persistence of evolving cooperative amplification is not possible in a simple reaction-diffusion reactor. Experimental set-ups with patchy environments, e.g. biomolecular amplification in coupled microstructured flow chambers or in microemulsion, are eligible candidates for the observation of such a self-organized pattern selection.

Structure and variability of spinning reaction waves in three-dimensional excitable media

A mathematical simulation for a reaction wave that propagates in a cylindrical sample is performed. The propagation modes that have not yet been observed experimentally are predicted. The areas of existence for these modes have been determined.

Wave propagation in subexcitable media with periodically modulated excitability

Wave propagation in a photosensitive, subexcitable Belousov-Zhabotinsky medium is made possible by periodic modulation of a homogeneous illumination field. The propagation can be understood in terms of an interplay between the radial expansion of the wave and the motion of its free ends as the excitability varies periodically. This description leads to a simple kinematic analysis that provides insights into the initial conditions and forcing parameters giving rise to sustained wave propagation.

Spontaneous spiral formation in two-dimensional oscillatory media

Computational studies of pattern formation in a modified Oregonator model of the Belousov-Zhabotinsky reaction is described. Initially inactive two-dimensional reaction media with an immobilized catalyst is connected to a reservoir of fresh reactants through a set of discrete points distributed randomly over the interphase surface. It is shown that the diffusion of reactants combined with oscillatory reaction kinetics can give rise to spontaneous spiral formation and phase waves.

Formation and evolution of scroll waves in photosensitive excitable media

Experimental and computational studies of the formation and evolution of scroll waves in three-dimensional excitable media are presented. Scroll waves are initiated in the photosensitive Belousov-Zhabotinsky reaction by perturbing traveling waves transverse to their direction of propagation. Scroll rings are generated by perturbing circular waves, which expand or contract depending on the strength of an imposed excitability gradient and its direction relative to the rotational direction of the scroll wave. (c) 1998 American Institute of Physics.

Noise sustained waves in subexcitable media: From chemical waves to brain waves

We discuss a novel type of spatiotemporal pattern that can be observed in subexcitable media when coupled to a thermal environment. These patterns have been recently observed in several different types of systems: a subexcitable photosensitive Belousov-Zhabotinsky reaction, hippocampal slices of rat brains, and astrocyte syncytium. In this paper, we introduce the basic concepts of subexcitable media, describe recent experimental observations in chemistry and neurophysiology, and put these observation into context with computer simulations. (c) 1998 American Institute of Physics.