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Jin J, Voth GA. Understanding dynamics in coarse-grained models. V. Extension of coarse-grained dynamics theory to non-hard sphere systems. J Chem Phys 2025; 162:124114. [PMID: 40145471 DOI: 10.1063/5.0254388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2024] [Accepted: 03/03/2025] [Indexed: 03/28/2025] Open
Abstract
Coarse-grained (CG) modeling has gained significant attention in recent years due to its wide applicability in enhancing the spatiotemporal scales of molecular simulations. While CG simulations, often performed with Hamiltonian mechanics, faithfully recapitulate structural correlations at equilibrium, they lead to ambiguously accelerated dynamics. In Paper I [J. Jin, K. S. Schweizer, and G. A. Voth, J. Chem. Phys. 158(3), 034103 (2023)], we proposed the excess entropy scaling relationship to understand the CG dynamics. Then, in Paper II [J. Jin, K. S. Schweizer, and G. A. Voth, J. Chem. Phys. 158(3), 034104 (2023)], we developed a theory to map the CG system into a dynamically consistent hard sphere system to analytically derive an expression for fast CG dynamics. However, many chemical and physical systems do not exhibit hard sphere-like behavior, limiting the extensibility of the developed theory. In this paper, we aim to generalize the theory to the non-hard sphere system based on the Weeks-Chandler-Andersen perturbation theory. Since non-hard sphere-like CG interactions affect the excess entropy term as it deviates from the hard sphere description, we explicitly account for the extra entropy to correct the non-hard sphere nature of the system. This approach is demonstrated for two different types of interactions seen in liquids, and we further provide a generalized description for any CG models using the generalized Gaussian CG models using Gaussian basis sets. Altogether, this work allows for extending the range and applicability of the hard sphere CG dynamics theory to a myriad of CG liquids.
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Affiliation(s)
- Jaehyeok Jin
- Department of Chemistry, Chicago Center for Theoretical Chemistry, Institute for Biophysical Dynamics, and James Franck Institute, The University of Chicago, Chicago, Illinois 60637, USA
- Department of Chemistry, Columbia University, New York, New York 10027, USA
| | - Gregory A Voth
- Department of Chemistry, Chicago Center for Theoretical Chemistry, Institute for Biophysical Dynamics, and James Franck Institute, The University of Chicago, Chicago, Illinois 60637, USA
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Bouzid O, Martínez-Fernández D, Herranz M, Karayiannis NC. Entropy-Driven Crystallization of Hard Colloidal Mixtures of Polymers and Monomers. Polymers (Basel) 2024; 16:2311. [PMID: 39204531 PMCID: PMC11359749 DOI: 10.3390/polym16162311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Revised: 08/05/2024] [Accepted: 08/11/2024] [Indexed: 09/04/2024] Open
Abstract
The most trivial example of self-assembly is the entropy-driven crystallization of hard spheres. Past works have established the similarities and differences in the phase behavior of monomers and chains made of hard spheres. Inspired by the difference in the melting points of the pure components, we study, through Monte Carlo simulations, the phase behavior of athermal mixtures composed of fully flexible polymers and individual monomers of uniform size. We analyze how the relative number fraction and the packing density affect crystallization and the established ordered morphologies. As a first result, a more precise determination of the melting point for freely jointed chains of tangent hard spheres is extracted. A synergetic effect is observed in the crystallization leading to synchronous crystallization of the two species. Structural analysis of the resulting ordered morphologies shows perfect mixing and thus no phase separation. Due to the constraints imposed by chain connectivity, the local environment of the individual spheres, as quantified by the Voronoi polyhedron, is systematically more spherical and more symmetric compared to that of spheres belonging to chains. In turn, the local environment of the ordered phase is more symmetric and more spherical compared to that of the initial random packing, demonstrating the entropic origins of the phase transition. In general, increasing the polymer content reduces the degree of crystallinity and increases the melting point to higher volume fractions. According to the present findings, relative concentration is another determining factor in controlling the phase behavior of hard colloidal mixtures based on polymers.
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Affiliation(s)
- Olia Bouzid
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutierrez Abascal 2, 28006 Madrid, Spain
| | - Daniel Martínez-Fernández
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutierrez Abascal 2, 28006 Madrid, Spain
| | - Miguel Herranz
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutierrez Abascal 2, 28006 Madrid, Spain
| | - Nikos Ch Karayiannis
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutierrez Abascal 2, 28006 Madrid, Spain
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Tang J, Wen X, Zhang Z, Wang D, Huang X, Wang Y. Influence of friction on the packing efficiency and short-to-intermediate range structure of hard-sphere systems. J Chem Phys 2023; 159:194901. [PMID: 37966007 DOI: 10.1063/5.0175513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Accepted: 10/25/2023] [Indexed: 11/16/2023] Open
Abstract
Using particle-resolved computer simulations, we investigate the effect of friction on the packing structure of hard-sphere mixtures with two kinds of particles under external compression. We first show that increasing friction between the particles results in a more disordered and less efficient packing of the local structure on the nearest neighbor scale. It is also found that standard two-point correlation functions, i.e., radial distribution function and static structure factor, show basically no detectable changes beyond short-range distances upon varying inter-particle friction. Further analysis of the structure using a four-point correlation method reveals that these systems have on the intermediate-range scale a three-dimensional structure with an icosahedral/dodecahedral symmetry that exhibits a pronounced dependence on friction: small friction gives rise to an orientational order that extends to larger distances. Our results also demonstrate that composition plays a role in that the degree of structural order and the structural correlation length are mainly affected by the friction coefficients associated with the more abundant species.
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Affiliation(s)
- Jiajun Tang
- College of Mathematics and Physics, Chengdu University of Technology, Chengdu 610059, China
| | - Xiaohui Wen
- College of Mathematics and Physics, Chengdu University of Technology, Chengdu 610059, China
| | - Zhen Zhang
- College of Mathematics and Physics, Chengdu University of Technology, Chengdu 610059, China
| | - Deyin Wang
- College of Mathematics and Physics, Chengdu University of Technology, Chengdu 610059, China
- School of Physics, Zhejiang University, Hangzhou 310027, China
| | - Xinbiao Huang
- College of Mathematics and Physics, Chengdu University of Technology, Chengdu 610059, China
| | - Yujie Wang
- College of Mathematics and Physics, Chengdu University of Technology, Chengdu 610059, China
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, Chengdu University of Technology, Chengdu 610059, China
- School of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai 200240, China
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Herranz M, Benito J, Foteinopoulou K, Karayiannis NC, Laso M. Polymorph Stability and Free Energy of Crystallization of Freely-Jointed Polymers of Hard Spheres. Polymers (Basel) 2023; 15:polym15061335. [PMID: 36987117 PMCID: PMC10058036 DOI: 10.3390/polym15061335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Revised: 02/27/2023] [Accepted: 03/01/2023] [Indexed: 03/30/2023] Open
Abstract
The free energy of crystallization of monomeric hard spheres as well as their thermodynamically stable polymorph have been known for several decades. In this work, we present semianalytical calculations of the free energy of crystallization of freely-jointed polymers of hard spheres as well as of the free energy difference between the hexagonal closed packed (HCP) and face-centered cubic (FCC) polymorphs. The phase transition (crystallization) is driven by an increase in translational entropy that is larger than the loss of conformational entropy of chains in the crystal with respect to chains in the initial amorphous phase. The conformational entropic advantage of the HCP polymer crystal over the FCC one is found to be ΔschHCP-FCC≈0.331×10-5k per monomer (expressed in terms of Boltzmann's constant k). This slight conformational entropic advantage of the HCP crystal of chains is by far insufficient to compensate for the larger translational entropic advantage of the FCC crystal, which is predicted to be the stable one. The calculated overall thermodynamic advantage of the FCC over the HCP polymorph is supported by a recent Monte Carlo (MC) simulation on a very large system of 54 chains of 1000 hard sphere monomers. Semianalytical calculations using results from this MC simulation yield in addition a value of the total crystallization entropy for linear, fully flexible, athermal polymers of Δs≈0.93k per monomer.
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Affiliation(s)
- Miguel Herranz
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutierrez Abascal 2, 28006 Madrid, Spain
| | - Javier Benito
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutierrez Abascal 2, 28006 Madrid, Spain
| | - Katerina Foteinopoulou
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutierrez Abascal 2, 28006 Madrid, Spain
| | - Nikos Ch Karayiannis
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutierrez Abascal 2, 28006 Madrid, Spain
| | - Manuel Laso
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutierrez Abascal 2, 28006 Madrid, Spain
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Jin J, Schweizer KS, Voth GA. Understanding dynamics in coarse-grained models. II. Coarse-grained diffusion modeled using hard sphere theory. J Chem Phys 2023; 158:034104. [PMID: 36681632 DOI: 10.1063/5.0116300] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
The first paper of this series [J. Chem. Phys. 158, 034103 (2023)] demonstrated that excess entropy scaling holds for both fine-grained and corresponding coarse-grained (CG) systems. Despite its universality, a more exact determination of the scaling relationship was not possible due to the semi-empirical nature. In this second paper, an analytical excess entropy scaling relation is derived for bottom-up CG systems. At the single-site CG resolution, effective hard sphere systems are constructed that yield near-identical dynamical properties as the target CG systems by taking advantage of how hard sphere dynamics and excess entropy can be analytically expressed in terms of the liquid packing fraction. Inspired by classical equilibrium perturbation theories and recent advances in constructing hard sphere models for predicting activated dynamics of supercooled liquids, we propose a new approach for understanding the diffusion of molecular liquids in the normal regime using hard sphere reference fluids. The proposed "fluctuation matching" is designed to have the same amplitude of long wavelength density fluctuations (dimensionless compressibility) as the CG system. Utilizing the Enskog theory to derive an expression for hard sphere diffusion coefficients, a bridge between the CG dynamics and excess entropy is then established. The CG diffusion coefficient can be roughly estimated using various equations of the state, and an accurate prediction of accelerated CG dynamics at different temperatures is also possible in advance of running any CG simulation. By introducing another layer of coarsening, these findings provide a more rigorous method to assess excess entropy scaling and understand the accelerated CG dynamics of molecular fluids.
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Affiliation(s)
- Jaehyeok Jin
- Department of Chemistry, Chicago Center for Theoretical Chemistry, Institute for Biophysical Dynamics, and James Franck Institute, The University of Chicago, Chicago, Illinois 60637, USA
| | - Kenneth S Schweizer
- Department of Material Science, Department of Chemistry, Department of Chemical and Biomolecular Engineering, and Materials Research Laboratory, University of Illinois, Urbana, Illinois 61801, USA
| | - Gregory A Voth
- Department of Chemistry, Chicago Center for Theoretical Chemistry, Institute for Biophysical Dynamics, and James Franck Institute, The University of Chicago, Chicago, Illinois 60637, USA
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Martínez-Fernández D, Herranz M, Foteinopoulou K, Karayiannis NC, Laso M. Local and Global Order in Dense Packings of Semi-Flexible Polymers of Hard Spheres. Polymers (Basel) 2023; 15:polym15030551. [PMID: 36771852 PMCID: PMC9919756 DOI: 10.3390/polym15030551] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 01/16/2023] [Accepted: 01/17/2023] [Indexed: 01/24/2023] Open
Abstract
The local and global order in dense packings of linear, semi-flexible polymers of tangent hard spheres are studied by employing extensive Monte Carlo simulations at increasing volume fractions. The chain stiffness is controlled by a tunable harmonic potential for the bending angle, whose intensity dictates the rigidity of the polymer backbone as a function of the bending constant and equilibrium angle. The studied angles range between acute and obtuse ones, reaching the limit of rod-like polymers. We analyze how the packing density and chain stiffness affect the chains' ability to self-organize at the local and global levels. The former corresponds to crystallinity, as quantified by the Characteristic Crystallographic Element (CCE) norm descriptor, while the latter is computed through the scalar orientational order parameter. In all cases, we identify the critical volume fraction for the phase transition and gauge the established crystal morphologies, developing a complete phase diagram as a function of packing density and equilibrium bending angle. A plethora of structures are obtained, ranging between random hexagonal closed packed morphologies of mixed character and almost perfect face centered cubic (FCC) and hexagonal close-packed (HCP) crystals at the level of monomers, and nematic mesophases, with prolate and oblate mesogens at the level of chains. For rod-like chains, a delay is observed between the establishment of the long-range nematic order and crystallization as a function of the packing density, while for right-angle chains, both transitions are synchronized. A comparison is also provided against the analogous packings of monomeric and fully flexible chains of hard spheres.
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Herranz M, Foteinopoulou K, Karayiannis NC, Laso M. Polymorphism and Perfection in Crystallization of Hard Sphere Polymers. Polymers (Basel) 2022; 14:polym14204435. [PMID: 36298013 PMCID: PMC9612263 DOI: 10.3390/polym14204435] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Revised: 10/12/2022] [Accepted: 10/14/2022] [Indexed: 11/24/2022] Open
Abstract
We present results on polymorphism and perfection, as observed in the spontaneous crystallization of freely jointed polymers of hard spheres, obtained in an unprecedentedly long Monte Carlo (MC) simulation on a system of 54 chains of 1000 monomers. Starting from a purely amorphous configuration, after an initial dominance of the hexagonal closed packed (HCP) polymorph and a transitory random hexagonal close packed (rHCP) morphology, the system crystallizes in a final, stable, face centered cubic (FCC) crystal of very high perfection. An analysis of chain conformational characteristics, of the spatial distribution of monomers and of the volume accessible to them shows that the phase transition is caused by an increase in translational entropy that is larger than the loss of conformational entropy of the chains in the crystal, compared to the amorphous state. In spite of the significant local re-arrangements, as reflected in the bending and torsion angle distributions, the average chain size remains unaltered during crystallization. Polymers in the crystal adopt ideal random walk statistics as their great length renders local conformational details, imposed by the geometry of the FCC crystal, irrelevant.
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Affiliation(s)
| | | | - Nikos Ch. Karayiannis
- Correspondence: (N.C.K.); (M.L.); Tel.: +34-910677318 (N.C.K.); +34-910677320 (M.L.)
| | - Manuel Laso
- Correspondence: (N.C.K.); (M.L.); Tel.: +34-910677318 (N.C.K.); +34-910677320 (M.L.)
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Ramos PM, Herranz M, Martínez-Fernández D, Foteinopoulou K, Laso M, Karayiannis NC. Crystallization of Flexible Chains of Tangent Hard Spheres under Full Confinement. J Phys Chem B 2022; 126:5931-5947. [PMID: 35904560 DOI: 10.1021/acs.jpcb.2c03424] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
We present results from extensive Monte Carlo simulations on the crystallization of athermal polymers under full confinement. Polymers are represented as freely jointed chains of tangent hard spheres of uniform size. Confinement is applied through the presence of flat, parallel, and impenetrable walls in all dimensions. We analyze crystallization as the summation of two contributions: one that occurs in the bulk volume of the system (bulk crystallization), and one on the wall surfaces (surface crystallization). Depending on volume fraction initially amorphous (disordered) hard-sphere chain packings transit to the stable crystal phase. The established ordered morphologies consist primarily of hexagonal close-packed (HCP) crystals in the bulk volume and of triangular (TRI) crystals on the surface. As in the case of athermal packings in the bulk (without confinement), a structural competition is observed between the 5-fold local symmetry and the formation of close-packed crystallites. Effectively, the full confinement inside a cube favors the growth of the HCP crystal, as the FCC one is quite incompatible with the imposed spatial constraints. Consequently, we observe the formation of noncompact ordered motifs which grow from the surface to the inner volume of the simulation cell. We further compare the 2D and 3D crystals formed by monomeric hard spheres under the same simulation conditions. Significant differences are observed at low densities that tend to diminish as concentration increases.
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Affiliation(s)
- Pablo Miguel Ramos
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutiérrez Abascal 2, 28006 Madrid, Spain
| | - Miguel Herranz
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutiérrez Abascal 2, 28006 Madrid, Spain
| | - Daniel Martínez-Fernández
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutiérrez Abascal 2, 28006 Madrid, Spain
| | - Katerina Foteinopoulou
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutiérrez Abascal 2, 28006 Madrid, Spain
| | - Manuel Laso
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutiérrez Abascal 2, 28006 Madrid, Spain
| | - Nikos Ch Karayiannis
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutiérrez Abascal 2, 28006 Madrid, Spain
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Lam MA, Khusid B, Kondic L, Meyer WV. Role of diffusion in crystallization of hard-sphere colloids. Phys Rev E 2021; 104:054607. [PMID: 34942784 DOI: 10.1103/physreve.104.054607] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2021] [Accepted: 10/12/2021] [Indexed: 11/07/2022]
Abstract
Vital for a variety of industries, colloids also serve as an excellent model to probe phase transitions at the individual particle level. Despite extensive studies, origins of the glass transition in hard-sphere colloids discovered about 30 y ago remain elusive. Results of our numerical simulations and asymptotic analysis suggest that cessation of long-time particle diffusivity does not suppress crystallization of a metastable liquid-phase hard-sphere colloid. Once a crystallite forms, its growth is then controlled by the particle diffusion in the depletion zone surrounding the crystallite. Using simulations, we evaluate the solid-liquid interface mobility from data on colloidal crystallization in terrestrial and microgravity experiments and demonstrate that there is no drastic difference between the respective mobility values. The insight into the effect of vanishing particle mobility and particle sedimentation on crystallization of colloids will help engineer colloidal materials with controllable structure.
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Affiliation(s)
- Michael A Lam
- New Jersey Institute of Technology, Newark, New Jersey 07102, USA
| | - Boris Khusid
- New Jersey Institute of Technology, Newark, New Jersey 07102, USA
| | - Lou Kondic
- New Jersey Institute of Technology, Newark, New Jersey 07102, USA
| | - William V Meyer
- Universities Space Research Association at NASA Glenn Research Center, Cleveland, Ohio 44135, USA
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An X, Dong K, Yang R, Zou R, Yu A. On the relationships between structural properties and packing density of uniform spheres. POWDER TECHNOL 2021. [DOI: 10.1016/j.powtec.2021.04.079] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Omar AK, Klymko K, GrandPre T, Geissler PL. Phase Diagram of Active Brownian Spheres: Crystallization and the Metastability of Motility-Induced Phase Separation. PHYSICAL REVIEW LETTERS 2021; 126:188002. [PMID: 34018789 DOI: 10.1103/physrevlett.126.188002] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2020] [Revised: 03/06/2021] [Accepted: 04/05/2021] [Indexed: 06/12/2023]
Abstract
Motility-induced phase separation (MIPS), the phenomenon in which purely repulsive active particles undergo a liquid-gas phase separation, is among the simplest and most widely studied examples of a nonequilibrium phase transition. Here, we show that states of MIPS coexistence are in fact only metastable for three-dimensional active Brownian particles over a very broad range of conditions, decaying at long times through an ordering transition we call active crystallization. At an activity just above the MIPS critical point, the liquid-gas binodal is superseded by the crystal-fluid coexistence curve, with solid, liquid, and gas all coexisting at the triple point where the two curves intersect. Nucleating an active crystal from a disordered fluid, however, requires a rare fluctuation that exhibits the nearly close-packed density of the solid phase. The corresponding barrier to crystallization is surmountable on a feasible timescale only at high activity, and only at fluid densities near maximal packing. The glassiness expected for such dense liquids at equilibrium is strongly mitigated by active forces, so that the lifetime of liquid-gas coexistence declines steadily with increasing activity, manifesting in simulations as a facile spontaneous crystallization at extremely high activity.
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Affiliation(s)
- Ahmad K Omar
- Department of Materials Science and Engineering, University of California, Berkeley, California 94720, USA
- Department of Chemistry, University of California, Berkeley, California 94720, USA
| | - Katherine Klymko
- Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
- NERSC, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Trevor GrandPre
- Department of Physics, University of California, Berkeley, California 94720, USA
| | - Phillip L Geissler
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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12
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Ramos PM, Herranz M, Foteinopoulou K, Karayiannis NC, Laso M. Entropy-Driven Heterogeneous Crystallization of Hard-Sphere Chains under Unidimensional Confinement. Polymers (Basel) 2021; 13:1352. [PMID: 33919100 PMCID: PMC8122411 DOI: 10.3390/polym13091352] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2021] [Revised: 04/15/2021] [Accepted: 04/19/2021] [Indexed: 11/16/2022] Open
Abstract
We investigate, through Monte Carlo simulations, the heterogeneous crystallization of linear chains of tangent hard spheres under confinement in one dimension. Confinement is realized through flat, impenetrable, and parallel walls. A wide range of systems is studied with respect to their average chain lengths (N = 12 to 100) and packing densities (ϕ = 0.50 to 0.61). The local structure is quantified through the Characteristic Crystallographic Element (CCE) norm descriptor. Here, we split the phenomenon into the bulk crystallization, far from the walls, and the projected surface crystallization in layers adjacent to the confining surfaces. Once a critical volume fraction is met, the chains show a phase transition, starting from regions near the hard walls. The established crystal morphologies consist of alternating hexagonal close-packed or face-centered cubic layers with a stacking direction perpendicular to the confining walls. Crystal layer perfection is observed with an increasing concentration. As in the case of the unconstrained phase transition of athermal polymers at high densities, crystal nucleation and growth compete with the formation of sites of a fivefold local symmetry. While surface crystallites show perfection with a predominantly triangular character, the morphologies of square crystals or of a mixed type are also formed. The simulation results show that the rate of perfection of the surface crystallization is not significantly faster than that of the bulk crystallization.
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Affiliation(s)
| | | | | | - Nikos Ch. Karayiannis
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politécnica de Madrid (UPM), José Gutierrez Abascal 2, 28006 Madrid, Spain; (P.M.R.); (M.H.); (K.F.); (M.L.)
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13
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Liu W, Zhu Y, Zhang T, Zhu H, He C, Ngai T. Microrheology of thermoresponsive poly(N-isopropylacrylamide) microgel dispersions near a substrate surface. J Colloid Interface Sci 2021; 597:104-113. [PMID: 33866206 DOI: 10.1016/j.jcis.2021.03.181] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2021] [Revised: 03/30/2021] [Accepted: 03/31/2021] [Indexed: 10/21/2022]
Abstract
HYPOTHESIS Relative to the bulk systems, the near-wall (<500 nm) rheological responses of soft poly(N-isopropylacrylamide) (PNIPAM) microgel dispersions may exhibit distinct dependence on the frequency (ω), temperature (T), and effective volume fraction (ϕeff) during the volume phase transitions. The microrheological behaviors are expected to be governed by the near-wall microstructure and its spatial heterogeneity. EXPERIMENTS The combination of active microrheometry (multipole magnetic tweezers) and total internal reflection microscopy (TIRM) was employed to probe the structure-rheology relationships of microgel dispersions near a substrate surface. The ω, T, and ϕeff-dependences of the storage modulus (G'), loss modulus (G"), and softness (J) were analyzed by power-law and Arrhenius-like scaling theories. The fluctuation of J was further analyzed to give a quantitative description of the inhomogeneity in the near-wall regions. FINDINGS (1) Remarkable differences in the rheological behaviors between the bulk and near-wall cases are revealed, where the latter shows a segmented overlap behavior in ϕeff; (2) Five regimes of ϕeff that correspond to distinct physical states of the microgel dispersions are determined; (3) The near-wall local structures exhibit more heterogeneity in the glass and colloidal gel regimes as compared to the liquid regime.
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Affiliation(s)
- Wei Liu
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen 518060, China; Key Laboratory of Optoelectronic Devices and Systems of Ministry of Education and Guangdong Province, College of Optoelectronic Engineering, Shenzhen University, Shenzhen 518060, China; College of Food Engineering and Biotechnology, Hanshan Normal University, Chaozhou 521041, China; Department of Chemistry, The Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China
| | - Yuwei Zhu
- Department of Chemistry, The Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China
| | - Tong Zhang
- Department of Chemistry, The Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China
| | - Hui Zhu
- College of Food Engineering and Biotechnology, Hanshan Normal University, Chaozhou 521041, China
| | - Chuanxin He
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen 518060, China.
| | - To Ngai
- Department of Chemistry, The Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China.
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14
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Artoni R, Larcher M, Jenkins JT, Richard P. Self-diffusion scalings in dense granular flows. SOFT MATTER 2021; 17:2596-2602. [PMID: 33523071 DOI: 10.1039/d0sm01846e] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
We report on measurements of self-diffusion coefficients in discrete numerical simulations of steady, homogeneous, collisional shearing flows of nearly identical, frictional, inelastic spheres. We focus on a range of relatively high solid volume fractions that are important in those terrestrial gravitational shearing flows that are dominated by collisional interactions. Diffusion over this range of solid fraction has not been well characterized in previous studies. We first compare the measured values with an empirical scaling based on shear rate previously proposed in the literature, and highlight the presence of anisotropy and the solid fraction dependence. We then compare the numerical measurements with those predicted by the kinetic theory for shearing flows of inelastic spheres and offer an explanation for why the measured and predicted values differ.
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Affiliation(s)
- Riccardo Artoni
- MAST-GPEM, Univ Gustave Eiffel, IFSTTAR, F-44344 Bouguenais, France.
| | - Michele Larcher
- Free University of Bozen-Bolzano, I-39100 Bozen-Bolzano, Italy
| | | | - Patrick Richard
- MAST-GPEM, Univ Gustave Eiffel, IFSTTAR, F-44344 Bouguenais, France.
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15
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Yao Z. Stress-induced ordering of two-dimensional packings of elastic spheres. Phys Rev E 2020; 101:062904. [PMID: 32688544 DOI: 10.1103/physreve.101.062904] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2020] [Accepted: 06/12/2020] [Indexed: 06/11/2023]
Abstract
Packing of particles in confined environments is a common problem in multiple fields. Here, based on the two-dimensional Hertzian particle model, we study the packing of deformable spherical particles under compression and reveal the crucial role of stress as an ordering field in regulating particle arrangement. Specifically, under increasing compression, the squeezed particles spontaneously organize into regular packings in the sequence of triangular and square lattices, pentagonal tessellation, and the reentrant triangular lattice. The rich ordered patterns and complex structures revealed in this work suggest a fruitful organizational strategy based on the interplay of external stress and intrinsic elastic instability of particle arrays.
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Affiliation(s)
- Zhenwei Yao
- School of Physics and Astronomy, and Institute of Natural Sciences, Shanghai Jiao Tong University, Shanghai 200240, China
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16
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Parreño O, Ramos PM, Karayiannis NC, Laso M. Self-Avoiding Random Walks as a Model to Study Athermal Linear Polymers under Extreme Plate Confinement. Polymers (Basel) 2020; 12:E799. [PMID: 32260075 PMCID: PMC7240602 DOI: 10.3390/polym12040799] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Revised: 03/24/2020] [Accepted: 03/25/2020] [Indexed: 02/04/2023] Open
Abstract
Monte Carlo (MC) simulations, built around chain-connectivity-altering moves and a wall-displacement algorithm, allow us to simulate freely-jointed chains of tangent hard spheres of uniform size under extreme confinement. The latter is realized through the presence of two impenetrable, flat, and parallel plates. Extreme conditions correspond to the case where the distance between the plates approaches the monomer size. An analysis of the local structure, based on the characteristic crystallographic element (CCE) norm, detects crystal nucleation and growth at packing densities well below the ones observed in bulk analogs. In a second step, we map the confined polymer chains into self-avoiding random walks (SAWs) on restricted lattices. We study all realizations of the cubic crystal system: simple, body centered, and face centered cubic crystals. For a given chain size (SAW length), lattice type, origin of SAW, and level of confinement, we enumerate all possible SAWs (equivalently all chain conformations) and calculate the size distribution. Results for intermediate SAW lengths are used to predict the behavior of long, fully entangled chains through growth formulas. The SAW analysis will allow us to determine the corresponding configurational entropy, as it is the driving force for the observed phase transition and the determining factor for the thermodynamic stability of the corresponding crystal morphologies.
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Key Words
- confinement, crystallization, entropy, hard sphere, polymer, random walk, Monte Carlo, phase transition, lattice model, cubic crystal system, direct enumeration
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Affiliation(s)
| | | | - Nikos Ch. Karayiannis
- Institute for Optoelectronic Systems and Microtechnology (ISOM) and Escuela Técnica Superior de Ingenieros Industriales (ETSII), Universidad Politecnica de Madrid (UPM), José Gutierrez Abascal 2, 28006 Madrid, Spain; (O.P.); (P.M.R.); (M.L.)
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17
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Abstract
A new analysis of elastic properties of dense hard-sphere (HS) fluids is presented, based on the expressions derived by Miller [J. Chem. Phys. 50, 2733 (1969)JCPSA60021-960610.1063/1.1671437]. Important consequences for HS fluids in terms of sound waves propagation, Poisson's ratio, Stokes-Einstein relation, and generalized Cauchy identity are explored. Conventional expressions for high-frequency elastic moduli for simple systems with continuous and differentiable interatomic interaction potentials are known to diverge when approaching the HS repulsive limit. The origin of this divergence is identified here. It is demonstrated that these conventional expressions are only applicable for sufficiently soft interactions and should not be applied to HS systems. The reported results can be of interest in the context of statistical physics, physics of fluids, soft condensed matter, and granular materials.
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Affiliation(s)
- Sergey Khrapak
- Institut für Materialphysik im Weltraum, Deutsches Zentrum für Luft- und Raumfahrt (DLR), 82234 Weßling, Germany and Joint Institute for High Temperatures, Russian Academy of Sciences, 125412 Moscow, Russia
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18
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Cinacchi G, Torquato S. Hard convex lens-shaped particles: metastable, glassy and jammed states. SOFT MATTER 2018; 14:8205-8218. [PMID: 30283973 DOI: 10.1039/c8sm01519h] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We generate and study dense positionally and/or orientationally disordered, including jammed, monodisperse packings of hard convex lens-shaped particles (lenses). Relatively dense isotropic fluid configurations of lenses of various aspect ratios are slowly compressed via a Monte Carlo method based procedure. Under this compression protocol, while 'flat' lenses form a nematic fluid phase (where particles are positionally disordered but orientationally ordered) and 'globular' lenses form a plastic solid phase (where particles are positionally ordered but orientationally disordered), 'intermediate', neither 'flat' nor 'globular', lenses do not form either mesophase. In general, a crystal solid phase (where particles are both positionally and orientationally ordered) does not spontaneously form during lengthy numerical simulation runs. In correspondence to those volume fractions at which a transition to the crystal solid phase would occur in equilibrium, a 'downturn' is observed in the inverse compressibility factor versus volume fraction curve beyond which this curve behaves essentially linearly. This allows us to estimate the volume fraction at jamming of the dense non-crystalline packings so generated. These packings are nematic for 'flat' lenses and plastic for 'globular' lenses, while they are robustly isotropic for 'intermediate' lenses, as confirmed by the calculation of the τ order metric, among other quantities. The structure factors S(k) of the corresponding jammed states tend to zero as the wavenumber k goes to zero, indicating they are effectively hyperuniform (i.e., their infinite-wavelength density fluctuations are anomalously suppressed). Among all possible lens shapes, 'intermediate' lenses with aspect ratio around 2/3 are special because they are those that reach the highest volume fractions at jamming while being positionally and orientationally disordered and these volume fractions are as high as those reached by nematic jammed states of 'flat' lenses and plastic jammed states of 'globular' lenses. All of their attributes, taken together, make such 'intermediate' lens packings particularly good glass-forming materials.
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Affiliation(s)
- Giorgio Cinacchi
- Departamento de Física Teórica de la Materia Condensada, Instituto de Física de la Materia Condensada (IFIMAC), Instituto de Ciencias de Materiales "Nicolás Cabrera", Universidad Autónoma de Madrid, Ciudad Universitaria de Cantoblanco, E-28049 Madrid, Spain.
| | - Salvatore Torquato
- Department of Chemistry, Department of Physics, Institute for the Science and Technology of Materials, Program for Applied and Computational Mathematics, Princeton University, Princeton, New Jersey 08544, USA.
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19
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Torquato S. Perspective: Basic understanding of condensed phases of matter via packing models. J Chem Phys 2018; 149:020901. [DOI: 10.1063/1.5036657] [Citation(s) in RCA: 73] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Affiliation(s)
- S. Torquato
- Department of Chemistry, Department of Physics, Princeton Center for Theoretical Science, Princeton Institute for the Science and Technology of Materials, and Program in Applied and Computational Mathematics, Princeton University, Princeton, New Jersey 08544, USA
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20
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DiStasio RA, Zhang G, Stillinger FH, Torquato S. Rational design of stealthy hyperuniform two-phase media with tunable order. Phys Rev E 2018; 97:023311. [PMID: 29548140 DOI: 10.1103/physreve.97.023311] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2017] [Indexed: 06/08/2023]
Abstract
Disordered stealthy hyperuniform materials are exotic amorphous states of matter that have attracted recent attention because of their novel structural characteristics (hidden order at large length scales) and physical properties, including desirable photonic and transport properties. It is therefore useful to devise algorithms that enable one to design a wide class of such amorphous configurations at will. In this paper, we present several algorithms enabling the systematic identification and generation of discrete (digitized) stealthy hyperuniform patterns with a tunable degree of order, paving the way towards the rational design of disordered materials endowed with novel thermodynamic and physical properties. To quantify the degree of order or disorder of the stealthy systems, we utilize the discrete version of the τ order metric, which accounts for the underlying spatial correlations that exist across all relevant length scales in a given digitized two-phase (or, equivalently, a two-spin state) system of interest. Our results impinge on a myriad of fields, ranging from physics, materials science and engineering, visual perception, and information theory to modern data science.
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Affiliation(s)
- Robert A DiStasio
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, USA
| | - Ge Zhang
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA
| | - Frank H Stillinger
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA
| | - Salvatore Torquato
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA
- Department of Physics, Princeton Institute for the Science and Technology of Materials, and Program in Applied and Computational Mathematics, Princeton University, Princeton, New Jersey 08544, USA
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21
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Mondal A, Premkumar L, Das SP. Dependence of the configurational entropy on amorphous structures of a hard-sphere fluid. Phys Rev E 2018; 96:012124. [PMID: 29347211 DOI: 10.1103/physreve.96.012124] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2017] [Indexed: 11/07/2022]
Abstract
The free energy of a hard-sphere fluid for which the average energy is trivial signifies how its entropy changes with packing. The packing η_{f} at which the free energy of the crystalline state becomes lower than that of the disordered fluid state marks the freezing point. For packing fractions η>η_{f} of the hard-sphere fluid, we use the modified weighted density functional approximation to identify metastable free energy minima intermediate between uniform fluid and crystalline states. The distribution of the sharply localized density profiles, i.e., the inhomogeneous density field ρ(x) characterizing the metastable state is primarily described by a pair function g_{s}(η/η_{0}). η_{0} is a structural parameter such that for η=η_{0} the pair function is identical to that for the Bernal random structure. The configurational entropy S_{c} of the metastable hard-sphere fluid is calculated by subtracting the corresponding vibrational entropy from the total entropy. The extrapolated S_{c} vanishes as η→η_{K} and η_{K} is in agreement with other works. The dependence of η_{K} on the structural parameter η_{0} is obtained.
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Affiliation(s)
- Arijit Mondal
- School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India
| | | | - Shankar P Das
- School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India
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22
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Coniglio A, Pica Ciamarra M, Aste T. Universal behaviour of the glass and the jamming transitions in finite dimensions for hard spheres. SOFT MATTER 2017; 13:8766-8771. [PMID: 29130088 DOI: 10.1039/c7sm01481c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
We investigate the glass and the jamming transitions of hard spheres in finite dimensions d, through a revised cell theory, that combines the free volume and the Random First Order Theory (RFOT). Recent results show that in infinite dimension the ideal glass transition and jamming transitions are distinct, while based on our theory we argue that they indeed coincide for finite d. As a consequence, jamming results into a percolation transition described by RFOT, with a static length diverging with exponent ν = 2/d, which we verify through finite size scaling, and standard critical exponents α = 0, β = 0 and γ = 2 independent on d.
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Affiliation(s)
- Antonio Coniglio
- CNR-SPIN, Dipartimento di Fisica, Università"Federico II", Napoli, Via Cintia, 80126 Napoli, Italy.
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23
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An X, Huang F, Dong K, Yang X. DEM simulation of binary sphere packing densification under vertical vibration. PARTICULATE SCIENCE AND TECHNOLOGY 2017. [DOI: 10.1080/02726351.2017.1292335] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Xizhong An
- School of Metallurgy, Northeastern University, Shenyang, P R China
| | - Fei Huang
- School of Metallurgy, Northeastern University, Shenyang, P R China
| | - Kejun Dong
- Institute for Infrastructure Engineering, Western Sydney University, Penrith, NSW, Australia
| | - Xiaohong Yang
- School of Metallurgy, Northeastern University, Shenyang, P R China
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24
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Berthier L, Coslovich D, Ninarello A, Ozawa M. Equilibrium Sampling of Hard Spheres up to the Jamming Density and Beyond. PHYSICAL REVIEW LETTERS 2016; 116:238002. [PMID: 27341260 DOI: 10.1103/physrevlett.116.238002] [Citation(s) in RCA: 84] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2015] [Indexed: 06/06/2023]
Abstract
We implement and optimize a particle-swap Monte Carlo algorithm that allows us to thermalize a polydisperse system of hard spheres up to unprecedentedly large volume fractions, where previous algorithms and experiments fail to equilibrate. We show that no glass singularity intervenes before the jamming density, which we independently determine through two distinct nonequilibrium protocols. We demonstrate that equilibrium fluid and nonequilibrium jammed states can have the same density, showing that the jamming transition cannot be the end point of the fluid branch.
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Affiliation(s)
- Ludovic Berthier
- Laboratoire Charles Coulomb, UMR 5221 CNRS-Université de Montpellier, Montpellier 34095, France
| | - Daniele Coslovich
- Laboratoire Charles Coulomb, UMR 5221 CNRS-Université de Montpellier, Montpellier 34095, France
| | - Andrea Ninarello
- Laboratoire Charles Coulomb, UMR 5221 CNRS-Université de Montpellier, Montpellier 34095, France
| | - Misaki Ozawa
- Laboratoire Charles Coulomb, UMR 5221 CNRS-Université de Montpellier, Montpellier 34095, France
- Department of Physics, Nagoya University, Nagoya 464-8602, Japan
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25
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Wang M, Brady JF. Wang and Brady Reply. PHYSICAL REVIEW LETTERS 2016; 116:179802. [PMID: 27176545 DOI: 10.1103/physrevlett.116.179802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2016] [Indexed: 06/05/2023]
Affiliation(s)
- M Wang
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
| | - J F Brady
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
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26
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Ikeda A, Berthier L, Sollich P. Comment on "Constant Stress and Pressure Rheology of Colloidal Suspensions". PHYSICAL REVIEW LETTERS 2016; 116:179801. [PMID: 27176544 DOI: 10.1103/physrevlett.116.179801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2015] [Indexed: 06/05/2023]
Affiliation(s)
- A Ikeda
- Fukui Institute for Fundamental Chemistry, Kyoto University, Kyoto 606-8103, Japan
| | - L Berthier
- Laboratoire Charles Coulomb, UMR 5221 CNRS-Université de Montpellier, Montpellier 34095, France
| | - P Sollich
- King's College London, Department of Mathematics, Strand, London WC2R 2LS, United Kingdom
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27
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Barnard AS. Challenges in modelling nanoparticles for drug delivery. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2016; 28:023002. [PMID: 26682622 DOI: 10.1088/0953-8984/28/2/023002] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Although there have been significant advances in the fields of theoretical condensed matter and computational physics, when confronted with the complexity and diversity of nanoparticles available in conventional laboratories a number of modeling challenges remain. These challenges are generally shared among application domains, but the impacts of the limitations and approximations we make to overcome them (or circumvent them) can be more significant one area than another. In the case of nanoparticles for drug delivery applications some immediate challenges include the incompatibility of length-scales, our ability to model weak interactions and solvation, the complexity of the thermochemical environment surrounding the nanoparticles, and the role of polydispersivity in determining properties and performance. Some of these challenges can be met with existing technologies, others with emerging technologies including the data-driven sciences; some others require new methods to be developed. In this article we will briefly review some simple methods and techniques that can be applied to these (and other) challenges, and demonstrate some results using nanodiamond-based drug delivery platforms as an exemplar.
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Affiliation(s)
- Amanda S Barnard
- CSIRO Virtual Nanoscience Laboratory, 343 Royal Parade, Parkville, Victoria 3052, Australia
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28
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Cinacchi G, Torquato S. Hard convex lens-shaped particles: Densest-known packings and phase behavior. J Chem Phys 2015; 143:224506. [DOI: 10.1063/1.4936938] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Giorgio Cinacchi
- Departamento de Física Teórica de la Materia Condensada, Instituto de Física de la Materia Condensada (IFIMAC), Instituto de Ciencias de Materiales “Nicolás Cabrera,” Universidad Autónoma de Madrid, Campus de Cantoblanco, E-28049 Madrid, Spain
| | - Salvatore Torquato
- Department of Chemistry, Department of Physics, Institute for the Science and Technology of Materials, Program for Applied and Computational Mathematics, Princeton University, Princeton, New Jersey 08544, USA
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29
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Paricaud P. Extension of the BMCSL equation of state for hard spheres to the metastable disordered region: Application to the SAFT approach. J Chem Phys 2015; 143:044507. [PMID: 26233145 DOI: 10.1063/1.4927148] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A simple modification of the Boublík-Mansoori-Carnahan-Starling-Leland equation of state is proposed for an application to the metastable disordered region. The new model has a positive pole at the jamming limit and can accurately describe the molecular simulation data of pure hard in the stable fluid region and along the metastable branch. The new model has also been applied to binary mixtures hard spheres, and an excellent description of the fluid and metastable branches can be obtained by adjusting the jamming packing fraction. The new model for hard sphere mixtures can be used as the repulsive term of equations of state for real fluids. In this case, the modified equations of state give very similar predictions of thermodynamic properties as the original models, and one can remove the multiple liquid density roots observed for some versions of the Statistical Associating Fluid Theory (SAFT) at low temperature without any modification of the dispersion term.
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Affiliation(s)
- P Paricaud
- Unité de Chimie et Procédés, ENSTA-ParisTech, Université Paris-Saclay, 828 Boulevard des Maréchaux, 91762 Palaiseau cedex, France
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30
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Roa R, Zholkovskiy EK, Nägele G. Ultrafiltration modeling of non-ionic microgels. SOFT MATTER 2015; 11:4106-4122. [PMID: 25921331 DOI: 10.1039/c5sm00678c] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Membrane ultrafiltration (UF) is a pressure driven process allowing for the separation and enrichment of protein solutions and dispersions of nanosized microgel particles. The permeate flux and the near-membrane concentration-polarization (CP) layer in this process is determined by advective-diffusive dispersion transport and the interplay of applied and osmotic transmembrane pressure contributions. The UF performance is thus strongly dependent on the membrane properties, the hydrodynamic structure of the Brownian particles, their direct and hydrodynamic interactions, and the boundary conditions. We present a macroscopic description of cross-flow UF of non-ionic microgels modeled as solvent-permeable spheres. Our filtration model involves recently derived semi-analytic expressions for the concentration-dependent collective diffusion coefficient and viscosity of permeable particle dispersions [Riest et al., Soft Matter, 2015, 11, 2821]. These expressions have been well tested against computer simulation and experimental results. We analyze the CP layer properties and the permeate flux at different operating conditions and discuss various filtration process efficiency and cost indicators. Our results show that the proper specification of the concentration-dependent transport coefficients is important for reliable filtration process predictions. We also show that the solvent permeability of microgels is an essential ingredient to the UF modeling. The particle permeability lowers the particle concentration at the membrane surface, thus increasing the permeate flux.
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Affiliation(s)
- Rafael Roa
- Forschungszentrum Jülich, Institute of Complex Systems (ICS-3), Jülich, 52425, Germany.
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31
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Riest J, Eckert T, Richtering W, Nägele G. Dynamics of suspensions of hydrodynamically structured particles: analytic theory and applications to experiments. SOFT MATTER 2015; 11:2821-2843. [PMID: 25707362 DOI: 10.1039/c4sm02816c] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
We present an easy-to-use analytic toolbox for the calculation of short-time transport properties of concentrated suspensions of spherical colloidal particles with internal hydrodynamic structure, and direct interactions described by a hard-core or soft Hertz pair potential. The considered dynamic properties include self-diffusion and sedimentation coefficients, the wavenumber-dependent diffusion function determined in dynamic scattering experiments, and the high-frequency shear viscosity. The toolbox is based on the hydrodynamic radius model (HRM) wherein the internal particle structure is mapped on a hydrodynamic radius parameter for unchanged direct interactions, and on an existing simulation data base for solvent-permeable and spherical annulus particles. Useful scaling relations for the diffusion function and self-diffusion coefficient, known to be valid for hard-core interaction, are shown to apply also for soft pair potentials. We further discuss extensions of the toolbox to long-time transport properties including the low-shear zero-frequency viscosity and the long-time self-diffusion coefficient. The versatility of the toolbox is demonstrated by the analysis of a previous light scattering study of suspensions of non-ionic PNiPAM microgels [Eckert et al., J. Chem. Phys., 2008, 129, 124902] in which a detailed theoretical analysis of the dynamic data was left as an open task. By the comparison with Hertz potential based calculations, we show that the experimental data are consistently and accurately described using the Verlet-Weis corrected Percus-Yevick structure factor as input, and for a solvent penetration length equal to three percent of the excluded volume radius. This small amount of solvent permeability of the microgel particles has a significant dynamic effect at larger concentrations.
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Affiliation(s)
- Jonas Riest
- Forschungszentrum Jülich GmbH, ICS-3 - Soft Condensed Matter, 52428 Jülich, Germany.
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32
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Zhou Y, Milner ST. T1 process and dynamics in glass-forming hard-sphere liquids. SOFT MATTER 2015; 11:2700-2705. [PMID: 25693721 DOI: 10.1039/c4sm02459a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
To study the relationship between dynamics and structure in a glass-forming liquid, we introduce a purely geometric criterion for locally mobile particles in a dense hard-sphere fluid: namely, "T1-active" particles, which can gain or lose at least one Voronoi neighbor by moving within their free volume with other particles fixed. We obtain geometrical and dynamical properties for monodisperse hard-sphere fluids with 0.40 < ϕ < 0.64 using a "crystal-avoiding" MD simulation that effectively suppresses crystallization without altering the dynamics. We find that the fraction of T1-active particles vanishes at random close packing, while the percolation threshold of T1-inactive particles is essentially identical to the commonly identified hard-sphere glass transition, ϕg ≈ 0.585.
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Affiliation(s)
- Yuxing Zhou
- Department of Chemical Engineering, Pennsylvania State University, University Park, State College, PA 16803, USA.
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33
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Zaccarelli E, Liddle SM, Poon WCK. On polydispersity and the hard sphere glass transition. SOFT MATTER 2015; 11:324-330. [PMID: 25412138 DOI: 10.1039/c4sm02321h] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
We investigate the dynamics of polydisperse hard spheres at high packing fractions ϕ. We use extensive numerical simulations based on an experimentally-realistic particle size distribution (PSD) and compare to commonly-used PSDs such as Gaussian or top hat distribution. We find that the mode of kinetic arrest depends on the PSD's shape and not only on its variance. For the experimentally-realistic PSD we find ageing dynamics even though the density correlators decay fully to zero for ϕ ≥ 0.59. We observe substantial decoupling of the dynamics of the smallest and largest particles. While the smallest particles remain diffusive in all our simulations, a power-law describes the largest-particle diffusion, suggesting an ideal arrest at ϕc ∼ 0.588. The latter is however averted just before ϕc, due to the presence of the mobile smallest particles. In addition, we identify that a partial aging mechanism is at work, whose effects are most pronounced for the largest particles. By comparing our results with recent experimental observations of ergodic behavior up to ϕ ∼ 0.6 in a hard-sphere system, we argue that this is an effect of polydispersity, which smears out the glass transition.
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Affiliation(s)
- Emanuela Zaccarelli
- CNR-ISC Uos Sapienza and Dipartimento di Fisica, Sapienza Università di Roma, P.le A. Moro 2, I-00185, Roma, Italy.
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34
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Foteinopoulou K, Karayiannis NC, Laso M. Monte Carlo simulations of densely-packed athermal polymers in the bulk and under confinement. Chem Eng Sci 2015. [DOI: 10.1016/j.ces.2014.08.021] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Zhang K, Smith WW, Wang M, Liu Y, Schroers J, Shattuck MD, O'Hern CS. Connection between the packing efficiency of binary hard spheres and the glass-forming ability of bulk metallic glasses. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 90:032311. [PMID: 25314450 DOI: 10.1103/physreve.90.032311] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2014] [Indexed: 06/04/2023]
Abstract
We perform molecular dynamics simulations to compress binary hard spheres into jammed packings as a function of the compression rate R, size ratio α, and number fraction x(S) of small particles to determine the connection between the glass-forming ability (GFA) and packing efficiency in bulk metallic glasses (BMGs). We define the GFA by measuring the critical compression rate R(c), below which jammed hard-sphere packings begin to form "random crystal" structures with defects. We find that for systems with α≳0.8 that do not demix, R(c) decreases strongly with Δϕ(J), as R(c)∼exp(-1/Δϕ(J)(2)), where Δϕ(J) is the difference between the average packing fraction of the amorphous packings and random crystal structures at R(c). Systems with α≲0.8 partially demix, which promotes crystallization, but we still find a strong correlation between R(c) and Δϕ(J). We show that known metal-metal BMGs occur in the regions of the α and x(S) parameter space with the lowest values of R(c) for binary hard spheres. Our results emphasize that maximizing GFA in binary systems involves two competing effects: minimizing α to increase packing efficiency, while maximizing α to prevent demixing.
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Affiliation(s)
- Kai Zhang
- Department of Mechanical Engineering and Materials Science, Yale University, New Haven, Connecticut 06520, USA and Center for Research on Interface Structures and Phenomena, Yale University, New Haven, Connecticut 06520, USA
| | - W Wendell Smith
- Department of Physics, Yale University, New Haven, Connecticut 06520, USA
| | - Minglei Wang
- Department of Mechanical Engineering and Materials Science, Yale University, New Haven, Connecticut 06520, USA and Center for Research on Interface Structures and Phenomena, Yale University, New Haven, Connecticut 06520, USA
| | - Yanhui Liu
- Department of Mechanical Engineering and Materials Science, Yale University, New Haven, Connecticut 06520, USA and Center for Research on Interface Structures and Phenomena, Yale University, New Haven, Connecticut 06520, USA
| | - Jan Schroers
- Department of Mechanical Engineering and Materials Science, Yale University, New Haven, Connecticut 06520, USA and Center for Research on Interface Structures and Phenomena, Yale University, New Haven, Connecticut 06520, USA
| | - Mark D Shattuck
- Department of Mechanical Engineering and Materials Science, Yale University, New Haven, Connecticut 06520, USA and Department of Physics and Benjamin Levich Institute, The City College of the City University of New York, New York, New York 10031, USA
| | - Corey S O'Hern
- Department of Mechanical Engineering and Materials Science, Yale University, New Haven, Connecticut 06520, USA and Center for Research on Interface Structures and Phenomena, Yale University, New Haven, Connecticut 06520, USA and Department of Physics, Yale University, New Haven, Connecticut 06520, USA and Department of Applied Physics, Yale University, New Haven, Connecticut 06520, USA
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36
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Palberg T. Crystallization kinetics of colloidal model suspensions: recent achievements and new perspectives. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2014; 26:333101. [PMID: 25035303 DOI: 10.1088/0953-8984/26/33/333101] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Colloidal model systems allow studying crystallization kinetics under fairly ideal conditions, with rather well-characterized pair interactions and minimized external influences. In complementary approaches experiment, analytic theory and simulation have been employed to study colloidal solidification in great detail. These studies were based on advanced optical methods, careful system characterization and sophisticated numerical methods. Over the last decade, both the effects of the type, strength and range of the pair-interaction between the colloidal particles and those of the colloid-specific polydispersity have been addressed in a quantitative way. Key parameters of crystallization have been derived and compared to those of metal systems. These systematic investigations significantly contributed to an enhanced understanding of the crystallization processes in general. Further, new fundamental questions have arisen and (partially) been solved over the last decade: including, for example, a two-step nucleation mechanism in homogeneous nucleation, choice of the crystallization pathway, or the subtle interplay of boundary conditions in heterogeneous nucleation. On the other hand, via the application of both gradients and external fields the competition between different nucleation and growth modes can be controlled and the resulting microstructure be influenced. The present review attempts to cover the interesting developments that have occurred since the turn of the millennium and to identify important novel trends, with particular focus on experimental aspects.
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Affiliation(s)
- Thomas Palberg
- Institut für Physik, Johannes Gutenberg Universität Mainz, 55099 Mainz, Germany
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Ogarko V, Rivas N, Luding S. Communication: Structure characterization of hard sphere packings in amorphous and crystalline states. J Chem Phys 2014; 140:211102. [DOI: 10.1063/1.4880236] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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38
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Pártay LB, Bartók AP, Csányi G. Nested sampling for materials: the case of hard spheres. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 89:022302. [PMID: 25353467 DOI: 10.1103/physreve.89.022302] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2013] [Indexed: 06/04/2023]
Abstract
The recently introduced nested sampling algorithm allows the direct and efficient calculation of the partition function of atomistic systems. We demonstrate its applicability to condensed phase systems with periodic boundary conditions by studying the three-dimensional hard-sphere model. Having obtained the partition function, we show how easy it is to calculate the compressibility and the free energy as functions of the packing fraction and local order, verifying that the transition to crystallinity has a very small barrier, and that the entropic contribution of jammed states to the free energy is negligible for packing fractions above the phase transition. We quantify the previously proposed schematic phase diagram and estimate the extent of the region of jammed states. We find that within our samples, the maximally random jammed configuration is surprisingly disordered.
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Affiliation(s)
- Lívia B Pártay
- University Chemical Laboratory, University of Cambridge, Lensfield Road, CB2 1EW Cambridge, United Kingdom
| | - Albert P Bartók
- Engineering Laboratory, University of Cambridge, Trumpington Street, CB2 1PZ Cambridge, United Kingdom
| | - Gábor Csányi
- Engineering Laboratory, University of Cambridge, Trumpington Street, CB2 1PZ Cambridge, United Kingdom
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39
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Shinde DP, Mehta A, Barker GC. Shaking-induced crystallization of dense sphere packings. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014; 89:022204. [PMID: 25353464 DOI: 10.1103/physreve.89.022204] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2013] [Indexed: 06/04/2023]
Abstract
We use a hybrid Monte Carlo algorithm to simulate the shaking of spheres at different vibrational amplitudes and find that spontaneous crystallization occurs in specific dynamical regimes. Several crystallizing transitions are typically observed, leading to end states which can be fully or partially ordered, depending on the shaking amplitude, which we investigate using metrics of global and local order. At the lowest amplitudes, crystallization is incomplete, at least for our times of observation. For amplitude ranges where crystallization is complete, there is typically a competition between hcp and fcc ordering. It is seen that fcc ordering typically predominates; in fact for an optimal range of amplitudes, spontaneous crystallization into a pure fcc state is observed. An interesting feature is the breakdown of global order when there is juxtaposition of fully developed hcp and fcc order locally: we suggest that this is due to the interfaces between the different domains of order, which play the same role as dislocations.
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Affiliation(s)
- D P Shinde
- Department of Theoretical Sciences, S. N. Bose National Centre for Basic Sciences, Calcutta, Calcutta 700098, India
| | - Anita Mehta
- Department of Theoretical Sciences, S. N. Bose National Centre for Basic Sciences, Calcutta, Calcutta 700098, India
| | - G C Barker
- Institute of Food Research, Norwich Research Park, Colney, Norwich NR4 7UA, United Kingdom
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Papanikolaou S, Schroers J, Shattuck MD, O'Hern CS. Computational studies of the glass-forming ability of model bulk metallic glasses. J Chem Phys 2013; 139:124503. [DOI: 10.1063/1.4821637] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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41
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Mugemana C, Joset A, Guillet P, Appavou MS, De Souza N, Fustin CA, Leyh B, Gohy JF. Structure of Metallo-Supramolecular Micellar Gels. MACROMOL CHEM PHYS 2013. [DOI: 10.1002/macp.201300288] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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42
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Vargas MC, Pérez-Ángel G. Crystallization time scales for polydisperse hard-sphere fluids. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:042313. [PMID: 23679420 DOI: 10.1103/physreve.87.042313] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2012] [Indexed: 06/02/2023]
Abstract
We study the evolution of crystallization in dense mono- and polydisperse hard sphere fluids, initially quenched to an amorphous configuration. We use as signatures of crystallization both the decay of the reduced pressure Z and the increase in the local and global orientational order parameters Q[over ¯](6). For a given realization of the crystallization process these parameters show sudden changes, both large and small, separated by long periods of quiescence. However, averaging over a large number of realizations, a well-defined scenario for their evolution appears. We find an initial fast relaxation to a disordered state, followed by a period of slow variation, associated to the presence of nucleation events, followed by a fast change, composed of the growth of a few crystals with different orientations, and a final and slow coarsening in a domain-growth process. No clear scaling for this whole process was found. We also find that the transition to an stable glassy fluid is quite sharp as the polydispersity is increased, showing a probable first-order phase transition behavior. A well-defined boundary between crystallizing and permanently amorphous fluids should exist, at least for a region in packing fractions. We looked for segregation at large values of polydispersity, but no effects of this type were found.
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Affiliation(s)
- M Cristina Vargas
- Departamento de Física Aplicada, CINVESTAV del IPN, A. P. 73 Cordemex, 97310 Mérida, Yucatán, Mexico
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Marcotte É, Stillinger FH, Torquato S. Nonequilibrium static growing length scales in supercooled liquids on approaching the glass transition. J Chem Phys 2013; 138:12A508. [DOI: 10.1063/1.4769422] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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44
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Lemarchand CA. Distribution of melting times and critical droplet in kinetic Monte Carlo and molecular dynamics. J Chem Phys 2013; 138:034506. [DOI: 10.1063/1.4775773] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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45
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Karayiannis NC, Foteinopoulou K, Laso M. Spontaneous crystallization in athermal polymer packings. Int J Mol Sci 2012; 14:332-58. [PMID: 23263666 PMCID: PMC3565267 DOI: 10.3390/ijms14010332] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2012] [Accepted: 12/14/2012] [Indexed: 11/17/2022] Open
Abstract
We review recent results from extensive simulations of the crystallization of athermal polymer packings. It is shown that above a certain packing density, and for sufficiently long simulations, all random assemblies of freely-jointed chains of tangent hard spheres of uniform size show a spontaneous transition into a crystalline phase. These polymer crystals adopt predominantly random hexagonal close packed morphologies. An analysis of the local environment around monomers based on the shape and size of the Voronoi polyhedra clearly shows that Voronoi cells become more spherical and more symmetric as the system transits to the ordered state. The change in the local environment leads to an increase in the monomer translational contribution to the entropy of the system, which acts as the driving force for the phase transition. A comparison of the crystallization of hard-sphere polymers and monomers highlights similarities and differences resulting from the constraints imposed by chain connectivity.
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Affiliation(s)
- Nikos Ch. Karayiannis
- Institute of Optoelectronics and Microsystems (ISOM) and ETSII, Polytechnic University of Madrid (UPM), José Gutiérrez Abascal 2, 28006 Madrid, Spain; E-Mails: (N.Ch.K.); (K.F.)
| | - Katerina Foteinopoulou
- Institute of Optoelectronics and Microsystems (ISOM) and ETSII, Polytechnic University of Madrid (UPM), José Gutiérrez Abascal 2, 28006 Madrid, Spain; E-Mails: (N.Ch.K.); (K.F.)
| | - Manuel Laso
- Institute of Optoelectronics and Microsystems (ISOM) and ETSII, Polytechnic University of Madrid (UPM), José Gutiérrez Abascal 2, 28006 Madrid, Spain; E-Mails: (N.Ch.K.); (K.F.)
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46
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Volkov N, Lyubartsev A, Bergström L. Phase transitions and thermodynamic properties of dense assemblies of truncated nanocubes and cuboctahedra. NANOSCALE 2012; 4:4765-4771. [PMID: 22751657 DOI: 10.1039/c2nr30411b] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Inspired by recent advances on the self-assembly of non-spherical nanoparticles, Monte Carlo simulations of the packing and thermodynamic properties of truncated nanocubes and cuboctahedra have been performed. The ergodicity problem was overcome by a modified Wang-Landau entropic sampling algorithm and equilibrium structural and thermodynamic properties were computed over a wide density range for both non-interacting and interacting particles. We found a structural transition from a simple cubic to a rhombohedral order when the degree of truncation exceeds a value of 0.9.
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Affiliation(s)
- Nikolai Volkov
- Department of Chemistry and Molecular Biology, University of Gothenburg, SE-412 96 Gothenburg, Sweden
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47
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Torquato S, Jiao Y. Organizing principles for dense packings of nonspherical hard particles: not all shapes are created equal. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 86:011102. [PMID: 23005363 DOI: 10.1103/physreve.86.011102] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2012] [Indexed: 06/01/2023]
Abstract
We have recently devised organizing principles to obtain maximally dense packings of the Platonic and Archimedean solids and certain smoothly shaped convex nonspherical particles [Torquato and Jiao, Phys. Rev. E 81, 041310 (2010)]. Here we generalize them in order to guide one to ascertain the densest packings of other convex nonspherical particles as well as concave shapes. Our generalized organizing principles are explicitly stated as four distinct propositions. All of our organizing principles are applied to and tested against the most comprehensive set of both convex and concave particle shapes examined to date, including Catalan solids, prisms, antiprisms, cylinders, dimers of spheres, and various concave polyhedra. We demonstrate that all of the densest known packings associated with this wide spectrum of nonspherical particles are consistent with our propositions. Among other applications, our general organizing principles enable us to construct analytically the densest known packings of certain convex nonspherical particles, including spherocylinders, "lens-shaped" particles, square pyramids, and rhombic pyramids. Moreover, we show how to apply these principles to infer the high-density equilibrium crystalline phases of hard convex and concave particles. We also discuss the unique packing attributes of maximally random jammed packings of nonspherical particles.
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Affiliation(s)
- Salvatore Torquato
- Department of Chemistry, Princeton Center for Theoretical Science, Program of Applied and Computational Mathematics, Princeton Institute of the Science and Technology of Materials, Princeton University, Princeton, New Jersey 08544, USA.
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48
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Lemarchand CA. Molecular dynamics simulations of a hard sphere crystal and reaction-like mechanism for homogeneous melting. J Chem Phys 2012; 136:234505. [DOI: 10.1063/1.4729753] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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49
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Schreck CF, O'Hern CS, Silbert LE. Tuning jammed frictionless disk packings from isostatic to hyperstatic. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 84:011305. [PMID: 21867162 DOI: 10.1103/physreve.84.011305] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2010] [Revised: 05/27/2011] [Indexed: 05/31/2023]
Abstract
We perform extensive computational studies of two-dimensional static bidisperse disk packings using two distinct packing-generation protocols. The first involves thermally quenching equilibrated liquid configurations to zero temperature over a range of thermal quench rates r and initial packing fractions followed by compression and decompression in small steps to reach packing fractions φ(J) at jamming onset. For the second, we seed the system with initial configurations that promote micro- and macrophase-separated packings followed by compression and decompression to φ(J). Using these protocols, we generate more than 10(4) static packings over a wide range of packing fraction, contact number, and compositional and positional order. We find that disordered, isostatic packings exist over a finite range of packing fractions in the large-system limit. In agreement with previous calculations, the most dilute mechanically stable packings with φ min ≈ 0.84 are obtained for r > r*, where r* is the rate above which φ(J) is insensitive to rate. We further compare the structural and mechanical properties of isostatic versus hyperstatic packings. The structural characterizations include the contact number, several order parameters, and mixing ratios of the large and small particles. We find that the isostatic packings are positionally and compositionally disordered (with only small changes in a number of order parameters), whereas bond-orientational and compositional order increase strongly with contact number for hyperstatic packings. In addition, we calculate the static shear modulus and normal mode frequencies (in the harmonic approximation) of the static packings to understand the extent to which the mechanical properties of disordered, isostatic packings differ from partially ordered packings. We find that the mechanical properties of the packings change continuously as the contact number increases from isostatic to hyperstatic.
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Affiliation(s)
- Carl F Schreck
- Department of Physics, Yale University, New Haven, Connecticut 06520-8120, USA
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50
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Karayiannis NC, Malshe R, de Pablo JJ, Laso M. Fivefold symmetry as an inhibitor to hard-sphere crystallization. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2011; 83:061505. [PMID: 21797370 DOI: 10.1103/physreve.83.061505] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2011] [Revised: 04/26/2011] [Indexed: 05/31/2023]
Abstract
Through molecular simulations we investigate the dynamics of crystallization of hard spheres of uniform size from dense amorphous states and the role that hidden structures in an otherwise disordered medium might have on it. It is shown that short-range order in the form of sites with fivefold symmetry acts as a powerful inhibitor to crystal growth. Fivefold sites not only retard crystallization, but can self-assemble into organized structures that arrest crystallization at high densities or lead to the formation of defects in a crystal. The latter effect can be understood in terms of a random polyhedral model.
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Affiliation(s)
- Nikos Ch Karayiannis
- Institute of Optoelectronics and Microsystems (ISOM) and ETSII, Universidad Politecnica de Madrid (UPM), Madrid, Spain
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