Chatzidimitriou-dreismann et al. reply:

Highly sensitive temperature sensor using one-dimensional Bragg Reflector for biomedical applications

A theoretical investigation of multi-layer Bragg Reflector (BR) structure to design highly sensitive temperature sensor is proposed to measure the temperature over a wide range. Characteristic-Matrix (CM) mathematical tool is used to design and analyse the proposed temperature sensor. A 1D Distributed Bragg Reflector multi-layer structure is used to design and analyse the sensing characteristics of the proposed sensor. Periodic modulation in the Refractive-Index (RI) of the two materials, high and low, forms DBR multi-layer structure. Germanium and air are used as the two alternate materials of BR for high and low dielectric layers respectively. Parameters of many semiconductor materials, including germanium, varies with temperature. Here we have considered RI variation of germanium with the temperature to model and design the proposed sensor. A defect layer is introduced at the center of multi-layer structure to obtain the resonating mode for an incident electromagnetic wave. The sensor can detect temperature over a wide range from 100 to 550 K. A resonating mode, shifting towards different wavelength region is observed for the temperature variations. The influence of increase in the DBR layers (N) and defect cavity geometrical length (l_D) is studied. The obtained results conclude that the cavity defect length and BR layers affects the sensing parameters of the designed sensor. The obtained RI sensitivity, Q-factor, temperature sensitivity and detection limit of the sensor are 2.323 μm/RIU, 115,000, 1.18 nm/K and 9.024 × 10^-6 RIU respectively. Theoretically obtained transmission spectrum was validated using Monte Carlo simulation.

Coordination Sphere of Lanthanide Aqua Ions Resolved with Ab Initio Molecular Dynamics and X-ray Absorption Spectroscopy

To resolve the fleeting structures of lanthanide Ln3+ aqua ions in solution, we (i) performed the first ab initio molecular dynamics (AIMD) simulations of the entire series of Ln3+ aqua ions in explicit water solvent using pseudopotentials and basis sets recently optimized for lanthanides and (ii) measured the symmetry of the hydrating waters about Ln3+ ions (Nd3+, Dy3+, Er3+, Lu3+) for the first time with extended X-ray absorption fine structure (EXAFS). EXAFS spectra were measured experimentally and generated from AIMD trajectories to directly compare simulation, which concurrently considers the electronic structure and the atomic dynamics in solution, with experiment. We performed a comprehensive evaluation of EXAFS multiple-scattering analysis (up to 6.5 Å) to measure Ln-O distances and angular correlations (i.e., symmetry) and elucidate the molecular geometry of the first hydration shell. This evaluation, in combination with symmetry-dependent L3- and L1-edge spectral analysis, shows that the AIMD simulations remarkably reproduces the experimental EXAFS data. The error in the predicted Ln-O distances is less than 0.07 Å for the later lanthanides, while we observed excellent agreement with predicted distances within experimental uncertainty for the early lanthanides. Our analysis revealed a dynamic, symmetrically disordered first coordination shell, which does not conform to a single molecular geometry for most lanthanides. This work sheds critical light on the highly elusive coordination geometry of the Ln3+ aqua ions.

Theoretical vibrational Raman and surface-enhanced Raman scattering spectra of water interacting with silver clusters

In this study, we analyzed the Raman spectrum of a water molecule adsorbed on a cluster of 20 silver atoms, and the plasmonic electromagnetic effect of the silver surface was also considered to give a theoretical prediction of the surface-enhanced Raman scattering spectrum. The calculations were performed at the density functional theory (DFT) level by using both frozen and unfrozen silver clusters. Two different models were used to consider the plasmonic enhancement; one of them was a modified classical (dipole) model and the other was the coupled perturbed Hartree-Fock method with excitation frequencies obtained from time-dependent DFT calculations and with proper detuning of these frequencies. The importance of small geometrical distortions of the silver surface in the orientation of the adsorbed water was shown. Moreover, it was shown how the symmetry of the transition dipole moment and the symmetry of the vibrational modes influence the Raman intensities of the SERS spectrum.

Theoretical study of binding interactions and vibrational Raman spectra of water in hydrogen-bonded anionic complexes: (H2O)n- (n = 2 and 3), H2O...X- (X = F, Cl, Br, and I), and H2O...M- (M = Cu, Ag, and Au)

Binding interactions and Raman spectra of water in hydrogen-bonded anionic complexes have been studied by using the hybrid density functional theory method (B3LYP) and ab initio (MP2) method. In order to explore the influence of hydrogen bond interactions and the anionic effect on the Raman intensities of water, model complexes, such as the negatively charged water clusters ((H2O)n-, n = 2 and 3), the water...halide anions (H2O...X-, X = F, Cl, Br, and I), and the water-metal atom anionic complexes (H2O...M-, M = Cu, Ag, and Au), have been employed in the present calculations. These model complexes contained different types of hydrogen bonds, such as O-H...X-, O-H...M-, O-H...O, and O-H...e-. In particular, the last one is a dipole-bound electron involved in the anionic water clusters. Our results showed that there exists a large enhancement in the off-resonance Raman intensities of both the H-O-H bending mode and the hydrogen-bonded O-H stretching mode, and the enhancement factor is more significant for the former than for the latter. The reasons for these spectral properties can be attributed to the strong polarization effect of the proton acceptors (X-, M-, O, and e-) in these hydrogen-bonded complexes. We proposed that the strong Raman signal of the H-O-H bending mode may be used as a fingerprint to address the local microstructures of water molecules in the chemical and biological systems.