1
|
Duruskari GS, Khalilov AN, Mammadova GZ, Çelikesir ST, Akkurt M, Akobirshoeva AA, Maharramov AM. Crystal structure and Hirshfeld surface analysis of ( E)-3-[(4-methyl-benzyl-idene)amino]-5-phenylthiazolidin-2-iminium bromide N, N-di-methyl-formamide monosolvate. ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS 2020; 76:1694-1698. [PMID: 33117592 PMCID: PMC7534233 DOI: 10.1107/s2056989020012712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Accepted: 09/18/2020] [Indexed: 11/25/2022]
Abstract
In the crystal, each cation is connected to two anions by N—H⋯ Br hydrogen bonds, forming an (8) motif parallel to the (10) plane, while the N,N-dimethylformamide molecules are linked to the cations by C—H⋯O contacts. In the cation of the title salt, C17H18N3S+·Br−·C3H7NO, the central thiazolidine ring adopts an envelope conformation with puckering parameters Q(2) = 0.310 (3) Å and φ(2) = 42.2 (6)°. In the crystal, each cation is connected to two anions by N—H⋯ Br hydrogen bonds, forming an R42(8) motif parallel to the (10) plane. van der Waals interactions between the cations, anions and N,N-dimethylformamide molecules further stabilize the crystal structure in three dimensions. The most important contributions to the surface contacts are from H⋯H (55.6%), C⋯H/H⋯C (17.9%) and Br⋯H/H⋯Br (7.0%) interactions, as concluded from a Hirshfeld analysis.
Collapse
Affiliation(s)
- Gulnara Sh Duruskari
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Ali N Khalilov
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan.,Department of Physics and Chemistry, "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
| | - Gunay Z Mammadova
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| | | | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Anzurat A Akobirshoeva
- Academy of Science of the Republic of Tadzhikistan, Kh. Yu. Yusufbekov Pamir Biology Institute, 1 Kholdorova St, Khorog 736002, Gbao, Tajikistan
| | - Abel M Maharramov
- Organic Chemistry Department, Baku State University, Z. Khalilov str. 23, Az, 1148 Baku, Azerbaijan
| |
Collapse
|
2
|
Duruskari GS, Akkurt M, Mammadova GZ, Chyrka T, Maharramov AM. Crystal structure and Hirshfeld surface analysis of ( E)-3-(benzyl-idene-amino)-5-phenyl-thia-zolidin-2-iminium bromide. Acta Crystallogr E Crystallogr Commun 2020; 76:427-431. [PMID: 32148888 PMCID: PMC7057372 DOI: 10.1107/s2056989020001899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Accepted: 02/10/2020] [Indexed: 11/14/2023]
Abstract
The central thia-zolidine ring of the title salt, C16H16N3S+·Br-, adopts an envelope conformation, with the C atom bearing the phenyl ring as the flap atom. In the crystal, the cations and anions are linked by N-H⋯Br hydrogen bonds, forming chains parallel to the b-axis direction. Hirshfeld surface analysis and two-dimensional fingerprint plots indicate that the most important contributions to the crystal packing are from H⋯H (46.4%), C⋯H/H⋯C (18.6%) and H⋯Br/Br⋯H (17.5%) inter-actions.
Collapse
Affiliation(s)
- Gulnara Sh. Duruskari
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Taras Chyrka
- Department of Theoretical and Industrial Heat Engineering (TPT), National Technical University of Ukraine "Igor Sikorsky Kyiv Polytechnic Institute", 03056, Kyiv, Ukraine
| | - Abel M. Maharramov
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| |
Collapse
|
3
|
Duruskari GS, Khalilov AN, Akkurt M, Mammadova GZ, Chyrka T, Maharramov AM. Crystal structure and Hirshfeld surface analysis of 3-amino-5-phenyl-thia-zolidin-2-iminium bromide. Acta Crystallogr E Crystallogr Commun 2019; 75:1544-1547. [PMID: 31636991 PMCID: PMC6775745 DOI: 10.1107/s2056989019013069] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2019] [Accepted: 09/22/2019] [Indexed: 11/23/2022]
Abstract
In the cation of the title salt, C9H12N3S+·Br-, the thia-zolidine ring adopts an envelope conformation with the C atom adjacent to the phenyl ring as the flap. In the crystal, N-H⋯Br hydrogen bonds link the components into a three-dimensional network. Weak π-π stacking inter-actions between the phenyl rings of adjacent cations also contribute to the mol-ecular packing. A Hirshfeld surface analysis was conducted to qu-antify the contributions of the different inter-molecular inter-actions and contacts.
Collapse
Affiliation(s)
- Gulnara Sh. Duruskari
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Ali N. Khalilov
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
- Department of Physics and Chemistry, "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Taras Chyrka
- Department of Theoretical and Industrial Heat Engineering (TPT), National Technical University of Ukraine, "Igor Sikorsky Kyiv Polytechnic Institute", 03056, Kyiv, Ukraine
| | - Abel M. Maharramov
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| |
Collapse
|
4
|
Duruskari GS, Khalilov AN, Akkurt M, Mammadova GZ, Chyrka T, Maharramov AM. Crystal structure and Hirshfeld surface analysis of ( E)-3-[(4-chloro-benzyl-idene)amino]-5-phenyl-thia-zolidin-2-iminium bromide. Acta Crystallogr E Crystallogr Commun 2019; 75:1175-1179. [PMID: 31417787 PMCID: PMC6690452 DOI: 10.1107/s2056989019009885] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Accepted: 07/10/2019] [Indexed: 11/13/2022]
Abstract
The title salt, C16H15ClN3S+·Br-, is isotypic with (E)-3-[(4-fluoro-benzyl-idene)amino]-5-phenyl-thia-zolidin-2-iminium bromide [Khalilov et al. (2019 ▸). Acta Cryst. E75, 662-666]. In the cation of the title salt, the atoms of the phenyl ring attached to the central thia-zolidine ring and the atom joining the thia-zolidine ring to the benzene ring are disordered over two sets of sites with occupancies of 0.570 (3) and 0.430 (3). The major and minor components of the disordered thia-zolidine ring adopt slightly distorted envelope conformations, with the C atom bearing the phenyl ring as the flap atom. In the crystal, centrosymmetrically related cations and anions are linked into dimeric units via N-H⋯Br hydrogen bonds, which are further connected by weak C-H⋯Br contacts into chains parallel to the a axis. Furthermore, not existing in the earlier report of (E)-3-[(4-fluoro-benzyl-idene)amino]-5-phenyl-thia-zolidin-2-iminium bromide, C-H⋯π inter-actions and π-π stacking inter-actions [centroid-to-centroid distance = 3.897 (2) Å] between the major components of the disordered phenyl ring contribute to the stabilization of the mol-ecular packing. Hirshfeld surface analysis and two-dimensional fingerprint plots indicate that the most important contributions for the crystal packing are from H⋯H (30.5%), Br⋯H/H⋯Br (21.2%), C⋯H/H⋯C (19.2%), Cl⋯H/H⋯Cl (13.0%) and S⋯H/H⋯S (5.0%) inter-actions.
Collapse
Affiliation(s)
- Gulnara Sh. Duruskari
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Ali N. Khalilov
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
- Department of Physics and Chemistry, "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Gunay Z. Mammadova
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Taras Chyrka
- Department of Theoretical and Industrial Heat Engineering (TPT), National Technical University of Ukraine "Igor Sikorsky Kyiv Polytechnic Institute", 03056, Kyiv, Ukraine
| | - Abel M. Maharramov
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| |
Collapse
|
5
|
Khalilov AN, Atioğlu Z, Akkurt M, Duruskari GS, Toze FAA, Huseynova AT. Crystal structure and Hirshfeld surface analysis of ( E)-3-[(4-fluoro-benzyl-idene)amino]-5-phenyl-thia-zolidin-2-iminium bromide. Acta Crystallogr E Crystallogr Commun 2019; 75:662-666. [PMID: 31110807 PMCID: PMC6505598 DOI: 10.1107/s2056989019004973] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2019] [Accepted: 04/11/2019] [Indexed: 11/13/2022]
Abstract
In the cation of the title salt, C16H15FN3S+·Br-, the phenyl ring is disordered over two sets of sites with a refined occupancy ratio of 0.503 (4):0.497 (4). The mean plane of the thia-zolidine ring makes dihedral angles of 13.51 (14), 48.6 (3) and 76.5 (3)° with the fluoro-phenyl ring and the major- and minor-disorder components of the phenyl ring, respectively. The central thia-zolidine ring adopts an envelope conformation. In the crystal, centrosymmetrically related cations and anions are linked into dimeric units via N-H⋯Br hydrogen bonds, which are further connected by weak C-H⋯Br hydrogen bonds into chains parallel to [110]. Hirshfeld surface analysis and two-dimensional fingerprint plots indicate that the most important contributions to the crystal packing are from H⋯H (44.3%), Br⋯H/H⋯Br (16.8%), C⋯H/H⋯C (13.9%), F⋯H/H⋯F (10.3%) and S⋯H/H⋯S (3.8%) inter-actions.
Collapse
Affiliation(s)
- Ali N. Khalilov
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az 1148, Baku, Azerbaijan
- Department of Physics and Chemistry, "Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), H. Aliyev str. 135, Az 1063, Baku, Azerbaijan
| | - Zeliha Atioğlu
- İlke Education and Health Foundation, Cappadocia University, Cappadocia Vocational College, The Medical Imaging Techniques Program, 50420 Mustafapaşa, Ürgüp, Nevşehir, Turkey
| | - Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Gulnara Sh. Duruskari
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az 1148, Baku, Azerbaijan
| | - Flavien A. A. Toze
- Department of Chemistry, Faculty of Sciences, University of Douala, PO Box 24157, Douala, Republic of Cameroon
| | - Afet T. Huseynova
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az 1148, Baku, Azerbaijan
| |
Collapse
|
6
|
Akkurt M, Duruskari GS, Toze FAA, Khalilov AN, Huseynova AT. Crystal structure and Hirshfeld surface analysis of ( E)-3-[(2,3-di-chloro-benzyl-idene)amino]-5-phenyl-thia-zolidin-2-iminium bromide. Acta Crystallogr E Crystallogr Commun 2018; 74:1168-1172. [PMID: 30116586 PMCID: PMC6072981 DOI: 10.1107/s2056989018010496] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2018] [Accepted: 07/21/2018] [Indexed: 11/26/2022]
Abstract
In the cation of the title salt, C16H14Cl2N3S+·Br-, the central thia-zolidine ring adopts an envelope conformation. The phenyl ring is disordered over two sites with a refined occupancy ratio of 0.541 (9):0.459 (9). In the crystal, C-H⋯Br and N-H⋯Br hydrogen bonds link the components into a three-dimensional network with the cations and anions stacked along the b-axis direction. Weak C-H⋯π inter-actions, which only involve the minor disorder component of the ring, also contribute to the mol-ecular packing. In addition, there are also inversion-related Cl⋯Cl halogen bonds and C-Cl⋯π (ring) contacts. A Hirshfeld surface analysis was conducted to verify the contributions of the different inter-molecular inter-actions.
Collapse
Affiliation(s)
- Mehmet Akkurt
- Department of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Turkey
| | - Gulnara Sh. Duruskari
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Flavien A. A. Toze
- Department of Chemistry, Faculty of Sciences, University of Douala, PO Box 24157, Douala, Republic of Cameroon
| | - Ali N. Khalilov
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| | - Afat T. Huseynova
- Organic Chemistry Department, Baku State University, Z. Xalilov str. 23, Az, 1148 Baku, Azerbaijan
| |
Collapse
|
7
|
Rekis T, Bērziņš A. On the structural aspects of solid solutions of enantiomers: an intriguing case study of enantiomer recognition in the solid state. CrystEngComm 2018. [DOI: 10.1039/c8ce01245h] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The structural aspects of type 1 and type 2 solid solutions have been revised.
Collapse
Affiliation(s)
- Toms Rekis
- Department of Physical Chemistry
- University of Latvia
- Riga
- Latvia
| | - Agris Bērziņš
- Department of Physical Chemistry
- University of Latvia
- Riga
- Latvia
| |
Collapse
|
8
|
Brandel C, Cartigny Y, Coquerel G, Ter Horst JH, Petit S. Prenucleation Self-Assembly and Chiral Discrimination Mechanisms during Solution Crystallisation of Racemic Diprophylline. Chemistry 2016; 22:16103-16112. [PMID: 27667660 DOI: 10.1002/chem.201602707] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2016] [Indexed: 11/08/2022]
Abstract
The crystallisation behaviour of (RS)-diprophylline (DPL) in two different solvents is investigated to assess the incidence of solvated pre-associations on nucleation, crystal growth and chiral discrimination. In the solvated state, Raman spectroscopy shows that dimeric associations similar to those depicted in the crystalline solid solution (ssRII) predominate in isopropanol (IPA), which may account for the systematic spontaneous nucleation of this crystal form from this solvent. By contrast, spontaneous nucleation in DMF yields the stable racemic compound RI, consistently with the distinct features of the Raman spectrum collected in this solvent. A crystal growth study of ssRII in IPA reveals that the crystal habitus is impacted by the solution enantiomeric excess; this is explained by increased competition between homo- and heterochiral pre-associations. This is supported by a molecular modelling study on the enantiomeric selectivity of the DPL crystal lattices. The combination of assessment methods on solution chemistry, nucleation and chiral discrimination provides methodological tools from which the occurrence of solid solutions can be rationalised.
Collapse
Affiliation(s)
- Clément Brandel
- Normandi Université, Laboratoire SMS-EA3233, Université de Rouen, 76821, Mont Saint Aignan Cedex, France.
| | - Yohann Cartigny
- Normandi Université, Laboratoire SMS-EA3233, Université de Rouen, 76821, Mont Saint Aignan Cedex, France
| | - Gérard Coquerel
- Normandi Université, Laboratoire SMS-EA3233, Université de Rouen, 76821, Mont Saint Aignan Cedex, France
| | - Joop H Ter Horst
- University of Strathclyde, EPSRC Centre for Innovative, Manufacturing in Continuous Manufacturing and, Crystallisation (CMAC), Strathclyde Institute of Pharmacy, and Biomedical Sciences (SIPBS), Technology and Innovation Centre, 99 George Street, Glasgow, G1 1RD, UK
| | - Samuel Petit
- Normandi Université, Laboratoire SMS-EA3233, Université de Rouen, 76821, Mont Saint Aignan Cedex, France
| |
Collapse
|
9
|
Brandel C, Amharar Y, Rollinger JM, Griesser UJ, Cartigny Y, Petit S, Coquerel G. Impact of Molecular Flexibility on Double Polymorphism, Solid Solutions and Chiral Discrimination during Crystallization of Diprophylline Enantiomers. Mol Pharm 2013; 10:3850-61. [DOI: 10.1021/mp400308u] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Clément Brandel
- Unité
de Cristallogenèse, SMS, EA 3233, Université de Rouen, PRES Normandie Université, F-76821 Mont-Saint-Aignan Cedex, France
| | - Youness Amharar
- Unité
de Cristallogenèse, SMS, EA 3233, Université de Rouen, PRES Normandie Université, F-76821 Mont-Saint-Aignan Cedex, France
| | - Judith M. Rollinger
- Institute
of Pharmacy, University of Innsbruck, Innrain 52, 6020 Innsbruck, Austria
| | - Ulrich J. Griesser
- Institute
of Pharmacy, University of Innsbruck, Innrain 52, 6020 Innsbruck, Austria
| | - Yohann Cartigny
- Unité
de Cristallogenèse, SMS, EA 3233, Université de Rouen, PRES Normandie Université, F-76821 Mont-Saint-Aignan Cedex, France
| | - Samuel Petit
- Unité
de Cristallogenèse, SMS, EA 3233, Université de Rouen, PRES Normandie Université, F-76821 Mont-Saint-Aignan Cedex, France
| | - Gérard Coquerel
- Unité
de Cristallogenèse, SMS, EA 3233, Université de Rouen, PRES Normandie Université, F-76821 Mont-Saint-Aignan Cedex, France
| |
Collapse
|
10
|
Zhu S, Zhang H, Zhao Y, Shao M, Wang Z, Li M. Synthesis, structures and luminescence of three coordination polymers constructed from rigid 1,3,5-benzenetricarboxylic acid and flexible bis(imidazol-1-ylmethyl)-benzene. J Mol Struct 2008. [DOI: 10.1016/j.molstruc.2008.06.007] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|