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Vellasco Junior WT, Gomes CR, Vasconcelos TR, Wardell JL, Otero-de-la-Roza A, Jotani MM, Tiekink ER. Crystallographic and computational study of t-butyl N-[3-hydroxy-1-phenyl-4-(pyridin- 2-ylsulfanyl)butan-2-yl]carbamate and its pyrimidin-2-yl analogue. Z KRIST-CRYST MATER 2016. [DOI: 10.1515/zkri-2016-1990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
The crystal structure analysis of the biologically-relevant title compound (1) shows the carbonyl-O2 and amide-H atoms to be anti, and perpendicular relationships between the carbamate residue and the pyridyl ring [dihedral angle=84.60(10)°] and between the carbamate and aryl ring [74.84(11)°]; the rings are approximately co-planar [12.07(17)°]. An intramolecular hydroxyl-O–H···N(pyridyl) hydrogen bond that closes a S(7) loop is noted. Of interest is the observation that this hydrogen bond is not found in the structure of the pyrimidinyl analogue (2) which was characterised as a monohydrate, i.e. 2·H2O, in an earlier study. Density-functional theory calculations show the observed conformation in 1 is 2.0 kcal/mol more stable than the conformation where the intramolecular hydrogen bond is absent. This energy difference reduces to ca 0.5 kcal/mol in the case of 2. The differences in molecular conformations found for 1 and 2 are therefore ascribed to the dictates of overall molecular packing, in particular due to the influence of lattice water in 2·H2O.
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Affiliation(s)
- Walcimar T. Vellasco Junior
- Instituto de Tecnologia em Fármacos – Farmanguinhos, FioCruz –, Fundação Oswaldo Cruz, R. Sizenando Nabuco, 100, Manguinhos, 21041-250 Rio de Janeiro, RJ, Brazil
- Departamento de Química Orgânica, Universidade Federal Fluminense, Instituto de Química, Outeiro de São João Batista, Centro, Niterói, 24020-141, Rio de Janeiro, Brazil
| | - Claudia R.B. Gomes
- Instituto de Tecnologia em Fármacos – Farmanguinhos, FioCruz –, Fundação Oswaldo Cruz, R. Sizenando Nabuco, 100, Manguinhos, 21041-250 Rio de Janeiro, RJ, Brazil
| | - Thatyana R.A. Vasconcelos
- Departamento de Química Orgânica, Universidade Federal Fluminense, Instituto de Química, Outeiro de São João Batista, Centro, Niterói, 24020-141, Rio de Janeiro, Brazil
| | - James L. Wardell
- Instituto de Tecnologia em Fármacos – Farmanguinhos, FioCruz –, Fundação Oswaldo Cruz, R. Sizenando Nabuco, 100, Manguinhos, 21041-250 Rio de Janeiro, RJ, Brazil
- Department of Chemistry, Aberdeen University of Aberdeen, AB 24 3UE, United Kingdom of Great Britain and Northern Ireland
| | - Alberto Otero-de-la-Roza
- Department of Chemistry, University of British Columbia, Okanagan, 3247 University Way, Kelowna, British Columbia V1V 1V7, Canada
| | - Mukesh M. Jotani
- Department of Physics, Bhavan’s Sheth R. A. College of Science, Ahmedabad, Gujarat 380001, India
| | - Edward R.T. Tiekink
- Research Centre for Chemical Crystallography, Faculty of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
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Gomes CRB, Vasconcelos TRA, Junior WTV, Cunico W, Wardell JL, Wardell SMSV, Tiekink ERT. N-{(2S)-3-Hy-droxy-4-[(5-methyl-1,3,4-thia-diazol-2-yl)sulfan-yl]-1-phenyl-2-but-yl}-4-methyl-benzene-sulfonamide. Acta Crystallogr Sect E Struct Rep Online 2011; 67:o2447-o2448. [PMID: 22064936 PMCID: PMC3200695 DOI: 10.1107/s1600536811033575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2011] [Accepted: 08/17/2011] [Indexed: 05/31/2023]
Abstract
The thia-diazoyl and sulfonyl-benzene rings in the title compound, C(20)H(23)N(3)O(3)S(3), are aligned to the same side of the mol-ecule, forming a twisted 'U' shape [dihedral angle = 77.6 (5)°]. The benzyl-benzene ring is orientated in the opposite direction from the mol-ecule but projects approximately along the same axis as the other rings [dihedral angle between benzene rings = 28.2 (5)°] so that, overall, the mol-ecule has a flattened shape. The hy-droxy and amine groups are almost syn which enables the formation of inter-molecular hy-droxy-OH⋯N(thia-diazo-yl) and amine-H⋯O(sulfon-yl) hydrogen bonds leading to a supra-molecular chain aligned along the a axis.
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Affiliation(s)
- Claudia R. B. Gomes
- Instituto de Tecnologia em Fármacos - Farmanguinhos, FioCruz - Fundação, Oswaldo Cruz, R. Sizenando Nabuco, 100, Manguinhos, 21041-250, Rio de Janeiro, RJ, Brazil
| | - Thatyana R. A. Vasconcelos
- Universidade Federal Fluminense, Instituto de Química, Departamento de Química Orgânica, Outeiro de São João Batista, s/no, Centro, Niterói, 24020-141, Rio de Janeiro, Brazil
| | - Walcimar T. Vellasco Junior
- Instituto de Tecnologia em Fármacos - Farmanguinhos, FioCruz - Fundação, Oswaldo Cruz, R. Sizenando Nabuco, 100, Manguinhos, 21041-250, Rio de Janeiro, RJ, Brazil
- Universidade Federal Fluminense, Instituto de Química, Departamento de Química Orgânica, Outeiro de São João Batista, s/no, Centro, Niterói, 24020-141, Rio de Janeiro, Brazil
| | - Wilson Cunico
- NuQuiA - Núcleo de Qímica Aplicada, Departamento de Química Orgânica, UFPel, Campus Universitário s/n, 96010-900 Pelotas, RS, Brazil
| | - James L. Wardell
- Centro de Desenvolvimento Tecnológico em Saúde (CDTS), Fundação Oswaldo Cruz (FIOCRUZ), Casa Amarela, Campus de Manguinhos, Av. Brasil 4365, 21040-900, Rio de Janeiro, RJ, Brazil
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