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Ang AKR, Umena Y, Sato-Tomita A, Shibayama N, Happo N, Marumi R, Yamamoto Y, Kimura K, Kawamura N, Takano Y, Matsushita T, Sasaki YC, Shen JR, Hayashi K. Development of serial X-ray fluorescence holography for radiation-sensitive protein crystals. JOURNAL OF SYNCHROTRON RADIATION 2023; 30:368-378. [PMID: 36891850 PMCID: PMC10000799 DOI: 10.1107/s1600577522011833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/17/2022] [Accepted: 12/12/2022] [Indexed: 06/18/2023]
Abstract
X-ray fluorescence holography (XFH) is a powerful atomic resolution technique capable of directly imaging the local atomic structure around atoms of a target element within a material. Although it is theoretically possible to use XFH to study the local structures of metal clusters in large protein crystals, the experiment has proven difficult to perform, especially on radiation-sensitive proteins. Here, the development of serial X-ray fluorescence holography to allow the direct recording of hologram patterns before the onset of radiation damage is reported. By combining a 2D hybrid detector and the serial data collection used in serial protein crystallography, the X-ray fluorescence hologram can be directly recorded in a fraction of the measurement time needed for conventional XFH measurements. This approach was demonstrated by obtaining the Mn Kα hologram pattern from the protein crystal Photosystem II without any X-ray-induced reduction of the Mn clusters. Furthermore, a method to interpret the fluorescence patterns as real-space projections of the atoms surrounding the Mn emitters has been developed, where the surrounding atoms produce large dark dips along the emitter-scatterer bond directions. This new technique paves the way for future experiments on protein crystals that aim to clarify the local atomic structures of their functional metal clusters, and for other related XFH experiments such as valence-selective XFH or time-resolved XFH.
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Affiliation(s)
- Artoni Kevin R. Ang
- Department of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan
| | - Yasufumi Umena
- Synchrotron Radiation Research Center, Nagoya University, Furo, Chikusa, Nagoya 466-8603, Japan
| | - Ayana Sato-Tomita
- Division of Biophysics, Department of Physiology, Jichi Medical University, Yakushiji, Shimotsuke, Tochigi 329-0498, Japan
| | - Naoya Shibayama
- Division of Biophysics, Department of Physiology, Jichi Medical University, Yakushiji, Shimotsuke, Tochigi 329-0498, Japan
| | - Naohisa Happo
- Department of Computer and Network Engineering, Graduate School of Information Sciences, Hiroshima City University, Asa-Minami-ku, Hiroshima 731-3194, Japan
| | - Riho Marumi
- Department of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan
| | - Yuta Yamamoto
- Department of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan
| | - Koji Kimura
- Department of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan
| | - Naomi Kawamura
- Japan Synchrotron Radiation Research Institute (JASRI), Sayo, Hyôgo 679-5198, Japan
| | - Yu Takano
- Graduate School of Information Sciences, Hiroshima City University, Asa-Minami-ku, Hiroshima 731-3194, Japan
| | - Tomohiro Matsushita
- Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma 630-0192, Japan
| | - Yuji C. Sasaki
- Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Chiba 277-8561, Japan
| | - Jian-Ren Shen
- Research Institute for Interdisciplinary Science and Graduate School of Natural Science and Technology, Okayama University, Tsushima Naka, Okayama 700-8530, Japan
| | - Kouichi Hayashi
- Department of Physical Science and Engineering, Nagoya Institute of Technology, Gokiso, Showa, Nagoya 466-8555, Japan
- Japan Synchrotron Radiation Research Institute (JASRI), Sayo, Hyôgo 679-5198, Japan
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Abstract
Numerous advances have been made in X-ray technology in recent years. X-ray imaging plays an important role in the nondestructive exploration of the internal structures of objects. However, the contrast of X-ray absorption images remains low, especially for materials with low atomic numbers, such as biological samples. X-ray phase-contrast images have an intrinsically higher contrast than absorption images. In this review, the principles, milestones, and recent progress of X-ray phase-contrast imaging methods are demonstrated. In addition, prospective applications are presented.
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Kaminaga K, Oka D, Hasegawa T, Fukumura T. New Lutetium Oxide: Electrically Conducting Rock-Salt LuO Epitaxial Thin Film. ACS OMEGA 2018; 3:12501-12504. [PMID: 31457982 PMCID: PMC6644888 DOI: 10.1021/acsomega.8b02082] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/17/2018] [Accepted: 09/19/2018] [Indexed: 06/10/2023]
Abstract
C-rare earth structure lutetium sesquioxide Lu2O3 has been recognized as a high-k widegap insulator with closed shell Lu3+ ions. In this study, rock-salt structure lutetium monoxide LuO with unusual valence of Lu2+ (4f145d1), previously known as the gaseous phase, was synthesized as an epitaxial thin film by the pulsed laser deposition method. In contrast with transparent and highly insulating Lu2O3, LuO possessed a dark-brown color and high electrical conductivity concomitant with strong spin-orbit coupling as a manifestation of Lu 5d electron carriers.
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Affiliation(s)
- Kenichi Kaminaga
- Department
of Chemistry, The University of Tokyo, Tokyo 113-0033, Japan
- WPI-Advanced Institute for Materials
Research and Core Research Cluster, and Center for Spintronics
Research Network, Tohoku University, Sendai 980-8577, Japan
| | - Daichi Oka
- Department
of Chemistry, Tohoku University, Sendai 980-8578, Japan
| | - Tetsuya Hasegawa
- Department
of Chemistry, The University of Tokyo, Tokyo 113-0033, Japan
| | - Tomoteru Fukumura
- WPI-Advanced Institute for Materials
Research and Core Research Cluster, and Center for Spintronics
Research Network, Tohoku University, Sendai 980-8577, Japan
- Department
of Chemistry, Tohoku University, Sendai 980-8578, Japan
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Stellhorn JR, Hosokawa S, Happo N, Tajiri H, Matsushita T, Kaminaga K, Fukumura T, Hasegawa T, Kimura K, Hayashi K. Application of X-ray fluorescence holography to the analysis of the interior and surface of an yttrium oxide thin film. SURF INTERFACE ANAL 2018. [DOI: 10.1002/sia.6550] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Jens R. Stellhorn
- Department of Physics; Kumamoto University; Kumamoto Japan
- Department of Physical Science and Engineering; Nagoya Institute of Technology; Nagoya Japan
| | | | - Naohisa Happo
- Graduate School of Information Sciences; Hiroshima City University; Hiroshima Japan
| | - Hiroo Tajiri
- Japan Synchrotron Radiation Research Institute (JASRI); Hyogo Japan
| | | | - Kenichi Kaminaga
- Department of Chemistry; The University of Tokyo; Tokyo Japan
- Department of Chemistry; Tohoku University; Sendai Japan
| | - Tomoteru Fukumura
- Department of Chemistry; Tohoku University; Sendai Japan
- WPI Advanced Institute for Materials Research; Tohoku University; Sendai Japan
| | | | - Koji Kimura
- Department of Physical Science and Engineering; Nagoya Institute of Technology; Nagoya Japan
| | - Kouichi Hayashi
- Department of Physical Science and Engineering; Nagoya Institute of Technology; Nagoya Japan
- Frontier Research Institute for Materials Science; Nagoya Institute of Technology; Nagoya Japan
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Stellhorn JR, Ideguchi Y, Hosokawa S, Happo N, Matsushita T, Yubuta K, Suzuki M, Ishii H, Liao YF, Kimura K, Hayashi K. Temperature-dependent local atomic structures in the traditional Fe65Ni35Invar alloy by X-ray fluorescence holography. SURF INTERFACE ANAL 2018. [DOI: 10.1002/sia.6474] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
| | - Yuuki Ideguchi
- Department of Physics, Kumamoto University; Kumamoto 860-8555 Japan
| | - Shinya Hosokawa
- Department of Physics, Kumamoto University; Kumamoto 860-8555 Japan
| | - Naohisa Happo
- Graduate School of Information Sciences; Hiroshima City University; Hiroshima 731-3194 Japan
| | | | - Kunio Yubuta
- Institute for Materials Research; Tohoku University; Sendai 980-8577 Japan
| | - Motohiro Suzuki
- Japan Synchrotron Radiation Research Institute (JASRI); Sayo 679-5198 Japan
| | - Hirofumi Ishii
- National Synchrotron Radiation Research Center; Hsinchu 30076 Taiwan
| | - Yen-Fa Liao
- National Synchrotron Radiation Research Center; Hsinchu 30076 Taiwan
| | - Koji Kimura
- Department of Physical Science and Engineering; Nagoya Institute of Technology; Nagoya 466-8555 Japan
| | - Kouichi Hayashi
- Department of Physical Science and Engineering; Nagoya Institute of Technology; Nagoya 466-8555 Japan
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