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Tan C, Yu H, Xi Y, Li L, Liao M, Liu F, Duan L. Multi source translation based projection completion for interior region of interest tomography with CBCT. OPTICS EXPRESS 2022; 30:2963-2980. [PMID: 35209426 DOI: 10.1364/oe.442287] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Accepted: 12/29/2021] [Indexed: 06/14/2023]
Abstract
Interior tomography by rotary computed tomography (RCT) is an effective method to improve the detection efficiency and achieve high-resolution imaging for the region of interest (ROI) within a large-scale object. However, because only the X-rays through the ROI can be received by detector, the projection data is inevitably truncated, resulting in truncation artifacts in the reconstructed image. When the ROI is totally within the object, the solution of the problem is not unique, which is named interior problem. Fortunately, projection completion (PC) is an effective technique to solve the interior problem. In this study, we proposed a multi source translation CT based PC method (mSTCT-PC) to cope with the interior problem. Firstly, mSTCT-PC employs multi-source translation to sparsely obtain the global projection which covered the whole object. Secondly, the sparse global projection is utilized to fill up the truncated projection of ROI. The global projection and truncated projection are obtained under the same geometric parameters. Therefore, it omits the registration of projection. To verify the feasibility of this method, simulation and practical experiments were implemented. Compared with the results of ROI reconstructed by filtered back-projection (FBP), simultaneous iterative reconstruction technique-total variation (SIRT-TV) and the multi-resolution based method (mR-PC), the proposed mSTCT-PC is good at mitigating truncation artifacts, preserving details and improving the accuracy of ROI images.
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Bührer M, Xu H, Eller J, Sijbers J, Stampanoni M, Marone F. Unveiling water dynamics in fuel cells from time-resolved tomographic microscopy data. Sci Rep 2020; 10:16388. [PMID: 33009452 PMCID: PMC7532214 DOI: 10.1038/s41598-020-73036-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Accepted: 09/10/2020] [Indexed: 11/09/2022] Open
Abstract
X-ray dynamic tomographic microscopy offers new opportunities in the volumetric investigation of dynamic processes. Due to data complexity and their sheer amount, extraction of comprehensive quantitative information remains challenging due to the intensive manual interaction required. Particularly for dynamic investigations, these intensive manual requirements significantly extend the total data post-processing time, limiting possible dynamic analysis realistically to a few samples and time steps, hindering full exploitation of the new capabilities offered at dedicated time-resolved X-ray tomographic stations. In this paper, a fully automatized iterative tomographic reconstruction pipeline (rSIRT-PWC-DIFF) designed to reconstruct and segment dynamic processes within a static matrix is presented. The proposed algorithm includes automatic dynamic feature separation through difference sinograms, a virtual sinogram step for interior tomography datasets, time-regularization extended to small sub-regions for increased robustness and an automatic stopping criterion. We demonstrate the advantages of our approach on dynamic fuel cell data, for which the current data post-processing pipeline heavily relies on manual labor. The proposed approach reduces the post-processing time by at least a factor of 4 on limited computational resources. Full independence from manual interaction additionally allows straightforward up-scaling to efficiently process larger data, extensively boosting the possibilities in future dynamic X-ray tomographic investigations.
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Affiliation(s)
- Minna Bührer
- Swiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, 5232, Villigen, Aargau, Switzerland.,Institute for Biomedical Engineering, University and ETH Zürich, 8092, Zürich, Zürich, Switzerland
| | - Hong Xu
- Electrochemistry Laboratory, Paul Scherrer Institut, Forschungsstrasse 111, 5232, Villigen, Aargau, Switzerland
| | - Jens Eller
- Electrochemistry Laboratory, Paul Scherrer Institut, Forschungsstrasse 111, 5232, Villigen, Aargau, Switzerland
| | - Jan Sijbers
- imec-Vision Lab, Department of Physics, University of Antwerp, Universiteitsplein 1, 2610, Antwerpen, Antwerpen, Belgium
| | - Marco Stampanoni
- Swiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, 5232, Villigen, Aargau, Switzerland.,Institute for Biomedical Engineering, University and ETH Zürich, 8092, Zürich, Zürich, Switzerland
| | - Federica Marone
- Swiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, 5232, Villigen, Aargau, Switzerland.
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Wu Z, Gao K, Wang Z, Wei C, Wali F, Zan G, Wei W, Zhu P, Tian Y. Direct information retrieval after 3D reconstruction in grating-based X-ray phase-contrast computed tomography. JOURNAL OF SYNCHROTRON RADIATION 2018; 25:1222-1228. [PMID: 29979185 PMCID: PMC6038613 DOI: 10.1107/s1600577518008019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2017] [Accepted: 05/30/2018] [Indexed: 06/08/2023]
Abstract
Grating-based X-ray differential phase-contrast imaging has attracted a great amount of attention and has been considered as a potential imaging method in clinical medicine because of its compatibility with the traditional X-ray tube source and the possibility of a large field of view. Moreover, phase-contrast computed tomography provides three-dimensional phase-contrast visualization. Generally, two-dimensional information retrieval performed on every projection is required prior to three-dimensional reconstruction in phase-contrast computed tomography. In this paper, a three-dimensional information retrieval method to separate absorption and phase information directly from two reconstructed images is derived. Theoretical derivations together with numerical simulations have been performed to confirm the feasibility and veracity of the proposed method. The advantages and limitations compared with the reverse projection method are also discussed. Owing to the reduced data size and the absence of a logarithm operation, the computational time for information retrieval is shortened by the proposed method. In addition, the hybrid three-dimensional images of absorption and phase information were reconstructed using an absorption reconstruction algorithm, hence the existing data pre-processing methods and iterative reconstruction algorithms in absorption reconstruction may be utilized in phase reconstruction immediately.
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Affiliation(s)
- Zhao Wu
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, People’s Republic of China
| | - Kun Gao
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, People’s Republic of China
| | - Zhili Wang
- School of Electronic Science and Applied Physics, Hefei University of Technology, Hefei, Anhui 230009, People’s Republic of China
| | - Chenxi Wei
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, People’s Republic of China
| | - Faiz Wali
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, People’s Republic of China
| | - Guibin Zan
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, People’s Republic of China
| | - Wenbin Wei
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, People’s Republic of China
| | - Peiping Zhu
- Institute of High-Energy Physics, Chinese Academy of Sciences, Beijing 100049, People’s Republic of China
| | - Yangchao Tian
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230029, People’s Republic of China
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