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Begum K, Begum S, Sheikh C, Miyatake R, Zangrando E. Cis versus trans arrangement of di-thio-carbazate ligands in bis-chelated Ni and Cu complexes. Acta Crystallogr E Crystallogr Commun 2020; 76:692-696. [PMID: 32431934 PMCID: PMC7199265 DOI: 10.1107/s205698902000506x] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2020] [Accepted: 04/09/2020] [Indexed: 11/22/2022]
Abstract
The structures are described of two bis-chelated metal complexes of nickel(II) and copper(II) with S-n-hexyl 3-(1-phenyl-ethyl-idene)di-thio-carbazate Schiff bases in a cis configuration, namely, bis-[S-n-hexyl 3-(1-phenyl-ethyl-idene)di-thio-carbazato-κ2 N 3,S]nickel(II), [Ni(C15H21N2S2)2], and bis-[S-n-hexyl 3-(1-phenyl-ethyl-idene)di-thio-carbazato-κ2 N 3,S]copper(II), [Cu(C15H21N2S2)2]. In both complexes, the metals have distorted square-planar geometries. A search in the Cambridge Structural Database [Groom et al. (2016 ▸). Acta Cryst. B72, 171-179] for bis-chelated nickel(II) and copper(II) complexes with similar Schiff bases retrieved 55 and 36 hits for the two metals, respectively. An analysis of the geometrical parameters of complexes showing cis and trans configurations is reported and the values compared with those for the complexes described in this work.
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Affiliation(s)
- Khurshida Begum
- Department of Physics, Shahjalal University of Science and Technology, Sylhet 3114, Bangladesh
| | - Sabina Begum
- Department of Chemistry, Shahjalal University of Science and Technology, Sylhet 3114, Bangladesh
| | - Chanmiya Sheikh
- Department of Applied Chemistry, Faculty of Engineering, University of Toyama, Gofuku, Toyama 3190, Japan
| | - Ryuta Miyatake
- Center for Environmental Conservation and Research Safety, University of Toyama, Gofuku, Toyama 3190, Japan
| | - Ennio Zangrando
- Department of Chemical and Pharmaceutical Science, via Giorgieri 1/34127, Trieste, Italy
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Rusli AF, Kwong HC, Crouse KA, Jotani MM, Tiekink ERT. ( E)-{[(Butyl-sulfan-yl)methane-thio-yl]amino}(4-meth-oxy-benzyl-idene)amine: crystal structure and Hirshfeld surface analysis. Acta Crystallogr E Crystallogr Commun 2020; 76:208-213. [PMID: 32071748 PMCID: PMC7001837 DOI: 10.1107/s2056989020000328] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2020] [Accepted: 01/12/2020] [Indexed: 11/10/2022]
Abstract
The title hydrazine carbodi-thio-ate, C13H18N2OS2, is constructed about a central and almost planar C2N2S2 chromophore (r.m.s. deviation = 0.0263 Å); the terminal meth-oxy-benzene group is close to coplanar with this plane [dihedral angle = 3.92 (11)°]. The n-butyl group has an extended all-trans conformation [torsion angles S-Cm-Cm-Cm = -173.2 (3)° and Cm-Cm-Cm-Cme = 180.0 (4)°; m = methyl-ene and me = meth-yl]. The most prominent feature of the mol-ecular packing is the formation of centrosymmetric eight-membered {⋯HNCS}2 synthons, as a result of thio-amide-N-H⋯S(thio-amide) hydrogen bonds; these are linked via meth-oxy-C-H⋯π(meth-oxy-benzene) inter-actions to form a linear supra-molecular chain propagating along the a-axis direction. An analysis of the calculated Hirshfeld surfaces and two-dimensional fingerprint plots point to the significance of H⋯H (58.4%), S⋯H/H⋯S (17.1%), C⋯H/H⋯C (8.2%) and O⋯H/H⋯O (4.9%) contacts in the packing. The energies of the most significant inter-actions, i.e. the N-H⋯S and C-H⋯π inter-actions have their most significant contributions from electrostatic and dispersive components, respectively. The energies of two other identified close contacts at close to van der Waals distances, i.e. a thione-sulfur and meth-oxy-benzene-hydrogen contact (occurring within the chains along the a axis) and between methyl-ene-H atoms (occurring between chains to consolidate the three-dimensional architecture), are largely dispersive in nature.
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Affiliation(s)
- Aqilah Fasihah Rusli
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, UPM, Serdang 43400, Malaysia
| | - Huey Chong Kwong
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, UPM, Serdang 43400, Malaysia
| | - Karen A. Crouse
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, UPM, Serdang 43400, Malaysia
| | - Mukesh M. Jotani
- Department of Physics, Bhavan’s Sheth R. A. College of Science, Ahmedabad, Gujarat 380001, India
| | - Edward R. T. Tiekink
- Research Centre for Crystalline Materials, School of Science and Technology, Sunway University, 47500 Bandar Sunway, Selangor Darul Ehsan, Malaysia
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Begum K, Sheikh MC, Miyatake R, Zangrando E, Begum MS. Bis[ S-hexyl 3-(thiophen-2-ylmethylidene)dithiocarbazato-κ 2N3, S]palladium(II). IUCRDATA 2016. [DOI: 10.1107/s2414314616011329] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
In the title complex, [Pd(C12H17N2S3)2], the PdIIatom exhibits a square-planar coordination geometry with theN,S-chelating ligands arranged in atransconfiguration. Intramolecular C—H...S hydrogen bonds are observed. In the crystal, molecules are linked by weak C—H...N hydrogen-bond interactions, forming chains parallel to thebaxis.
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Zangrando E, Begum MS, Howlader MBH, Sheikh MC, Miyatake R. Bis[S-hexyl (E)-3-(4-methoxybenzylidene)dithiocarbazato-κ2N3,S]palladium(II). IUCRDATA 2016. [DOI: 10.1107/s2414314616005216] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
In the title complex, [Pd(C15H21N2OS2)2], the PdIIion is located on a crystallographic inversion center. The two Schiff base ligands in a deprotonated imino thiolate form chelate the metal atomviathe azomithine N and thiolate S atoms in atrans-square-planar configuration as imposed by the crystal symmetry. The complex has an approximately planar geometry with the exception of the hexyl chains; the mean plane of the five-membered chelate ring makes a dihedral angle of 15.43 (5)° with the benzene ring. In the crystal, the complex molecules are stacked along theaaxis.
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Begum MS, Howlader MBH, Sheikh MC, Miyatake R, Zangrando E. Crystal structure of S-hexyl (E)-3-(2-hy-droxy-benzyl-idene)di-thio-carbazate. Acta Crystallogr E Crystallogr Commun 2016; 72:290-2. [PMID: 27006789 PMCID: PMC4778818 DOI: 10.1107/s2056989016001857] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2016] [Accepted: 01/31/2016] [Indexed: 11/26/2022]
Abstract
The title compound, C14H20N2OS2 [systematic name: S-hexyl (E)-2-(2-hy-droxy-benzyl-idene)hydrazine-1-carbodi-thio-ate], crystallizes with four independent mol-ecules (A-D) in the asymmetric unit. All four mol-ecules adopt an E conformation with respect to the C=N bond of the benzyl-idene moiety and have an intra-molecular O-H⋯N hydrogen bond generating an S(6) ring motif. In the crystal, the A and D mol-ecules are connected by a pair N-H⋯S hydrogen bonds, forming a dimer with an R 2 (2)(8) ring motif. In the case of mol-ecules B and C, they are linked to themselves by pairs of N-H⋯S hydrogen bonds, forming B-B and C-C inversion dimers with R 2 (2)(8) ring motifs.
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Affiliation(s)
- M. S. Begum
- Department of Chemistry, Shahjalal University of Science and Technology, Sylhet 3114, Bangladesh
| | - M. B. H. Howlader
- Department of Chemistry, Rajshahi University, Rajshahi 6205, Bangladesh
| | - M. C. Sheikh
- Department of Applied Chemistry, Faculty of Engineering, University of Toyama, 3190 Gofuku, Toyama 930-8555, Japan
| | - R. Miyatake
- Center for Environmental Conservation and Research Safety, University of Toyama, 3190 Gofuku, Toyama 930-8555, Japan
| | - E. Zangrando
- Department of Chemical and Pharmaceutical Sciences, via Giorgieri 1, 34127 Trieste, Italy
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Begum MS, Zangrando E, Sheikh MC, Miyatake R, Hossain MM. Crystal structure of S-octyl (E)-3-(4-meth-oxy-benzyl-idene)di-thio-carbazate. Acta Crystallogr E Crystallogr Commun 2015; 71:o265-6. [PMID: 26029448 PMCID: PMC4438792 DOI: 10.1107/s205698901500568x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2015] [Accepted: 03/19/2015] [Indexed: 11/10/2022]
Abstract
As already observed in similar mol-ecules, the di-thio-carbazate group in the title compound, C17H26N2OS2, adopts an EE configuration with respect to the C=N bond of the benzyl-idene moiety. In the crystal, mol-ecules are connected into inversion dimers by pairs of N-H⋯S hydrogen bonds. The dimers are linked by weak π-π inter-actions, with centroid-to-centroid distances of 3.723 (11) Å, forming chains parallel to [110].
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Affiliation(s)
- M. S. Begum
- Department of Chemistry, Rajshahi University, Rajshahi-6205, Bangladesh
| | - E. Zangrando
- Department of Chemical and Pharmaceutical Sciences, via Giorgieri 1, 34127 Trieste, Italy
| | - M. C. Sheikh
- Department of Applied Chemistry, Faculty of Engineering, University of Toyama, 3190 Gofuku, Toyama 930-8555, Japan
| | - R. Miyatake
- Center for Environmental Conservation and Research Safety, University of Toyama, 3190 Gofuku, Toyama 930-8555, Japan
| | - M. M. Hossain
- Department of Chemistry, Rajshahi University, Rajshahi-6205, Bangladesh
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