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Sebbar G, Hni B, Hökelek T, Mague JT, Sebbar NK, Belkadi B, Essassi EM. Crystal structure, Hirshfeld surface analysis and inter-action energy, DFT and anti-bacterial activity studies of ( Z)-4-hexyl-2-(4-methyl-benzyl-idene)-2 H-benzo[ b][1,4]thia-zin-3(4 H)-one. Acta Crystallogr E Crystallogr Commun 2020; 76:889-895. [PMID: 32523758 PMCID: PMC7273998 DOI: 10.1107/s205698902000657x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Accepted: 05/15/2020] [Indexed: 11/13/2022]
Abstract
The title compound, C22H25NOS, consists of methyl-benzyl-idene and benzo-thia-zine units linked to a hexyl moiety, where the thia-zine ring adopts a screw-boat conformation. In the crystal, inversion dimers are formed by weak C-HMthn⋯OBnzthz hydrogen bonds and are linked into chains extending along the a-axis direction by weak C-HBnz⋯OBnzthz (Bnz = benzene, Bnzthz = benzo-thia-zine and Mthn = methine) hydrogen bonds. A Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (59.2%) and H⋯C/C⋯H (27.9%) inter-actions. Hydrogen bonding and van der Waals inter-actions are the dominant inter-actions in the crystal packing. Computational chemistry indicates that in the crystal, the C-HBnz⋯OBnzthz and C-HMthn⋯OBnzthz hydrogen-bond energies are 75.3 and 56.5 kJ mol-1, respectively. Density functional theory (DFT) optimized structures at the B3LYP/ 6-311 G(d,p) level are compared with the experimentally determined mol-ecular structure in the solid state. The HOMO-LUMO behaviour was elucidated to determine the energy gap. Moreover, the anti-bacterial activity of the title compound was evaluated against gram-positive and gram-negative bacteria.
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Affiliation(s)
- Ghizlane Sebbar
- Laboratory of Microbiology and Molecular Biology, Faculty of Sciences, University Mohammed V, Rabat, Morocco
| | - Brahim Hni
- Laboratoire de Chimie Organique Heterocyclique URAC 21, Pôle de Competence Pharmacochimie, Faculté des Sciences, Université Mohammed V, Rabat, Morocco
| | - Tuncer Hökelek
- Department of Physics, Hacettepe University, 06800 Beytepe, Ankara, Turkey
| | - Joel T. Mague
- Department of Chemistry, Tulane University, New Orleans, LA 70118, USA
| | - Nada Kheira Sebbar
- Laboratoire de Chimie Organique Heterocyclique URAC 21, Pôle de Competence Pharmacochimie, Faculté des Sciences, Université Mohammed V, Rabat, Morocco
- Laboratoire de Chimie Appliquée et Environnement, Equipe de Chimie Bioorganique Appliquée, Faculté des Sciences, Université Ibn Zohr, Agadir, Morocco
| | - Bouchra Belkadi
- Laboratory of Microbiology and Molecular Biology, Faculty of Sciences, University Mohammed V, Rabat, Morocco
| | - El Mokhtar Essassi
- Laboratoire de Chimie Organique Heterocyclique URAC 21, Pôle de Competence Pharmacochimie, Faculté des Sciences, Université Mohammed V, Rabat, Morocco
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Sebbar G, Mohamed E, Hökelek T, Mague JT, Sebbar NK, Essassi EM, Belkadi B. Crystal structure, Hirshfeld surface analysis and inter-action energy, DFT and anti-bacterial activity studies of ethyl 2-[(2 Z)-2-(2-chloro-benzyl-idene)-3-oxo-3,4-di-hydro-2 H-1,4-benzo-thia-zin-4-yl]acetate. Acta Crystallogr E Crystallogr Commun 2020; 76:629-636. [PMID: 32431922 PMCID: PMC7199248 DOI: 10.1107/s2056989020004119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Accepted: 03/24/2020] [Indexed: 11/24/2022]
Abstract
The title compound, C19H16ClNO3S, consists of chloro-phenyl methyl-idene and di-hydro-benzo-thia-zine units linked to an acetate moiety, where the thia-zine ring adopts a screw-boat conformation. In the crystal, two sets of weak C-HPh⋯ODbt (Ph = phenyl and Dbt = di-hydro-benzo-thia-zine) hydrogen bonds form layers of mol-ecules parallel to the bc plane. The layers stack along the a-axis direction with inter-calation of the ester chains. The crystal studied was a two component twin with a refined BASF of 0.34961 (5). The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H⋯H (37.5%), H⋯C/C⋯H (24.6%) and H⋯O/O⋯H (16.7%) inter-actions. Hydrogen-bonding and van der Waals inter-actions are the dominant inter-actions in the crystal packing. Computational chemistry indicates that in the crystal, C-HPh⋯ODbt hydrogen bond energies are 38.3 and 30.3 kJ mol-1. Density functional theory (DFT) optimized structures at the B3LYP/ 6-311 G(d,p) level are compared with the experimentally determined mol-ecular structure in the solid state. The HOMO-LUMO behaviour was elucidated to determine the energy gap. Moreover, the anti-bacterial activity of the title compound has been evaluated against gram-positive and gram-negative bacteria.
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Affiliation(s)
- Ghizlane Sebbar
- Laboratory of Microbiology and Molecular Biology, Faculty of Sciences, University Mohammed V, Rabat, Morocco
| | - Ellouz Mohamed
- Laboratoire de Chimie Organique Heterocyclique URAC 21, Pole de Competence Pharmacochimie, Faculté des Sciences, Université Mohammed V, Rabat, Morocco
| | - Tuncer Hökelek
- Department of Physics, Hacettepe University, 06800 Beytepe, Ankara, Turkey
| | - Joel T. Mague
- Department of Chemistry, Tulane University, New Orleans, LA 70118, USA
| | - Nada Kheira Sebbar
- Laboratoire de Chimie Organique Heterocyclique URAC 21, Pole de Competence Pharmacochimie, Faculté des Sciences, Université Mohammed V, Rabat, Morocco
- Laboratoire de Chimie Appliquee et Environnement, Equipe de Chimie Bioorganique Appliquee, Faculte des Sciences, Université Ibn Zohr, Agadir, Morocco
| | - El Mokhtar Essassi
- Laboratoire de Chimie Organique Heterocyclique URAC 21, Pole de Competence Pharmacochimie, Faculté des Sciences, Université Mohammed V, Rabat, Morocco
| | - Bouchra Belkadi
- Laboratory of Microbiology and Molecular Biology, Faculty of Sciences, University Mohammed V, Rabat, Morocco
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Hni B, Sebbar NK, Hökelek T, Redouane A, Mague JT, Hamou Ahabchane N, Essassi EM. Crystal structure, Hirshfeld surface analysis, inter-action energy and DFT studies of (2 Z)-2-(2,4-di-chloro-benzyl-idene)-4-nonyl-3,4-di-hydro-2 H-1,4-benzo-thia-zin-3-one. Acta Crystallogr E Crystallogr Commun 2020; 76:281-287. [PMID: 32071763 PMCID: PMC7001846 DOI: 10.1107/s2056989020001036] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Accepted: 01/25/2020] [Indexed: 11/10/2022]
Abstract
The title compound, C24H27Cl2NOS, contains 1,4-benzo-thia-zine and 2,4-di-chloro-phenyl-methyl-idene units in which the di-hydro-thia-zine ring adopts a screw-boat conformation. In the crystal, inter-molecular C-HBnz⋯OThz (Bnz = benzene and Thz = thia-zine) hydrogen bonds form chains of mol-ecules extending along the a-axis direction, which are connected to their inversion-related counterparts by C-HBnz⋯ClDchlphy (Dchlphy = 2,4-di-chloro-phen-yl) hydrogen bonds and C-HDchlphy⋯π (ring) inter-actions. These double chains are further linked by C-HDchlphy⋯OThz hydrogen bonds, forming stepped layers approximately parallel to (012). The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (44.7%), C⋯H/H⋯C (23.7%), Cl⋯H/H⋯Cl (18.9%), O⋯H/H⋯O (5.0%) and S⋯H/H⋯S (4.8%) inter-actions. Hydrogen-bonding and van der Waals inter-actions are the dominant inter-actions in the crystal packing. Computational chemistry indicates that in the crystal, C-HDchlphy⋯OThz, C-HBnz⋯OThz and C-HBnz⋯ClDchlphy hydrogen-bond energies are 134.3, 71.2 and 34.4 kJ mol-1, respectively. Density functional theory (DFT) optimized structures at the B3LYP/6-311 G(d,p) level are compared with the experimentally determined mol-ecular structure in the solid state. The HOMO-LUMO behaviour was elucidated to determine the energy gap. The two carbon atoms at the end of the nonyl chain are disordered in a 0.562 (4)/0.438 (4) ratio.
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Affiliation(s)
- Brahim Hni
- Laboratoire de Chimie Organique Hétérocyclique URAC 21, Pôle de Compétence Pharmacochimie, Av. Ibn Battouta, BP 1014, Faculté des Sciences, Université Mohammed V, Rabat, Morocco
| | - Nada Kheira Sebbar
- Laboratoire de Chimie Organique Hétérocyclique URAC 21, Pôle de Compétence Pharmacochimie, Av. Ibn Battouta, BP 1014, Faculté des Sciences, Université Mohammed V, Rabat, Morocco
- Laboratoire de Chimie Appliquée et Environnement, Equipe de Chimie Bioorganique Appliquée, Faculté des Sciences, Université Ibn Zohr, Agadir, Morocco
| | - Tuncer Hökelek
- Department of Physics, Hacettepe University, 06800 Beytepe, Ankara, Turkey
| | - Achour Redouane
- Laboratoire de Chimie Organique Hétérocyclique URAC 21, Pôle de Compétence Pharmacochimie, Av. Ibn Battouta, BP 1014, Faculté des Sciences, Université Mohammed V, Rabat, Morocco
| | - Joel T. Mague
- Department of Chemistry, Tulane University, New Orleans, LA 70118, USA
| | - Noureddine Hamou Ahabchane
- Laboratoire de Chimie Organique Hétérocyclique URAC 21, Pôle de Compétence Pharmacochimie, Av. Ibn Battouta, BP 1014, Faculté des Sciences, Université Mohammed V, Rabat, Morocco
| | - El Mokhtar Essassi
- Laboratoire de Chimie Organique Hétérocyclique URAC 21, Pôle de Compétence Pharmacochimie, Av. Ibn Battouta, BP 1014, Faculté des Sciences, Université Mohammed V, Rabat, Morocco
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