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Kim D, Yan L, Shimazoe K, Takahashi H, Ogane K, Yoshino M, Kamada K, Uenomachi M. Demonstration of in-vivo simultaneous 3D imaging with 18F-FDG and Na 131I using Compton-PET system. Sci Rep 2024; 14:20946. [PMID: 39251751 PMCID: PMC11385225 DOI: 10.1038/s41598-024-71750-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2024] [Accepted: 08/30/2024] [Indexed: 09/11/2024] Open
Abstract
Simultaneous imaging of the SPECT tracer 131I and PET tracer 18F is important in the diagnosis of high- and low-grade thyroid cancers because high-grade thyroid cancers have high 18F-FDG and low 131I uptake, while low-grade thyroid cancers have high 131I and low 18F-FDG uptake. In this study, Na131I and 18F-FDG were simultaneously imaged using the Compton-PET system, in vivo. The angular resolution and sensitivity of the Compton camera with 356 keV gamma ray measured using a 133Ba point source were 12.3° and 2 × 10-5, respectively. The spatial resolution and sensitivity of PET were measured with a 22Na point source. The transaxial and axial spatial resolutions of the PET at the center of the FOV were 1.15 mm and 2.04 mm, respectively. Its sensitivity was 1.2 × 10-4. In-vivo images of the 18F and 131I isotopes were simultaneously acquired from mice. These showed that 18F-FDG was active in the heart, brown fat, and brain, while Na131I was active in the thyroid, stomach, and bladder. Artifacts were found in the Compton camera images when the activity of 131I was much lower than that of 18F. This study demonstrates the potential of simultaneous clinical imaging of 18F and 131I.
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Affiliation(s)
- Donghwan Kim
- Department of Nuclear Engineering and Management, The University of Tokyo, 7-3-1 Hongo, Bunkyo City, Tokyo, Japan.
| | - Linlin Yan
- Department of Bioengineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo City, Tokyo, Japan
| | - Kenji Shimazoe
- Department of Nuclear Engineering and Management, The University of Tokyo, 7-3-1 Hongo, Bunkyo City, Tokyo, Japan
| | - Hiroyuki Takahashi
- Department of Nuclear Engineering and Management, The University of Tokyo, 7-3-1 Hongo, Bunkyo City, Tokyo, Japan
- Department of Bioengineering, The University of Tokyo, 7-3-1 Hongo, Bunkyo City, Tokyo, Japan
| | - Kenichiro Ogane
- Department of Nuclear Medicine, International University of Health and Welfare, 1-4-3 Mita, Minato City, Tokyo, Japan
| | - Masao Yoshino
- Institute for Materials Research, Tohoku University, 6-6-10 Aoba, Aramaki, Aoba-ku, Sendai, Miyagi, 980-8579, Japan
| | - Kei Kamada
- New Industry Creation Hatchery Center, Tohoku University, 6-6-10 Aoba, Aramaki, Aoba-ku, Sendai, Miyagi, 980-8579, Japan
| | - Mizuki Uenomachi
- Unit of Synergetic Studies for Space, Kyoto University, Kitashirakawa, Sakyo-ku, Kyoto, 606-8502, Japan
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Cheng L, Lyu Z, Liu H, Wu J, Jia C, Wu Y, Ji Y, Jiang N, Ma T, Liu Y. Efficient image reconstruction for a small animal PET system with dual-layer-offset detector design. Med Phys 2024; 51:2772-2787. [PMID: 37921396 DOI: 10.1002/mp.16814] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 10/10/2023] [Accepted: 10/10/2023] [Indexed: 11/04/2023] Open
Abstract
BACKGROUND A compact PET/SPECT/CT system Inliview-3000B has been developed to provide multi-modality information on small animals for biomedical research. Its PET subsystem employed a dual-layer-offset detector design for depth-of-interaction capability and higher detection efficiency, but the irregular design caused some difficulties in calculating the normalization factors and the sensitivity map. Besides, the relatively larger (2 mm) crystal cross-section size also posed a challenge to high-resolution image reconstruction. PURPOSE We present an efficient image reconstruction method to achieve high imaging performance for the PET subsystem of Inliview-3000B. METHODS List mode reconstruction with efficient system modeling was used for the PET imaging. We adopt an on-the-fly multi-ray tracing method with random crystal sampling to model the solid angle, crystal penetration and object attenuation effect, and modify the system response model during each iteration to improve the reconstruction performance and computational efficiency. We estimate crystal efficiency with a novel iterative approach that combines measured cylinder phantom data with simulated line-of-response (LOR)-based factors for normalization correction before reconstruction. Since it is necessary to calculate normalization factors and the sensitivity map, we stack the two crystal layers together and extend the conventional data organization method here to index all useful LORs. Simulations and experiments were performed to demonstrate the feasibility and advantage of the proposed method. RESULTS Simulation results showed that the iterative algorithm for crystal efficiency estimation could achieve good accuracy. NEMA image quality phantom studies have demonstrated the superiority of random sampling, which is able to achieve good imaging performance with much less computation than traditional uniform sampling. In the spatial resolution evaluation based on the mini-Derenzo phantom, 1.1 mm hot rods could be identified with the proposed reconstruction method. Reconstruction of double mice and a rat showed good spatial resolution and a high signal-to-noise ratio, and organs with higher uptake could be recognized well. CONCLUSION The results validated the superiority of introducing randomness into reconstruction, and demonstrated its reliability for high-performance imaging. The Inliview-3000B PET subsystem with the proposed image reconstruction can provide rich and detailed information on small animals for preclinical research.
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Affiliation(s)
- Li Cheng
- Department of Engineering Physics, Tsinghua University, Beijing, China
- Key Laboratory of Particle & Radiation Imaging, Ministry of Education (Tsinghua University), Beijing, China
| | - Zhenlei Lyu
- Department of Engineering Physics, Tsinghua University, Beijing, China
- Key Laboratory of Particle & Radiation Imaging, Ministry of Education (Tsinghua University), Beijing, China
| | - Hui Liu
- Department of Engineering Physics, Tsinghua University, Beijing, China
- Key Laboratory of Particle & Radiation Imaging, Ministry of Education (Tsinghua University), Beijing, China
| | - Jing Wu
- Center for Advanced Quantum Studies and Department of Physics, Beijing Normal University, Beijing, China
| | - Chao Jia
- Beijing Novel Medical Equipment Ltd, Beijing, China
| | - Yuanguang Wu
- Beijing Novel Medical Equipment Ltd, Beijing, China
| | - Yingcai Ji
- Beijing Novel Medical Equipment Ltd, Beijing, China
| | | | - Tianyu Ma
- Department of Engineering Physics, Tsinghua University, Beijing, China
- Key Laboratory of Particle & Radiation Imaging, Ministry of Education (Tsinghua University), Beijing, China
| | - Yaqiang Liu
- Department of Engineering Physics, Tsinghua University, Beijing, China
- Key Laboratory of Particle & Radiation Imaging, Ministry of Education (Tsinghua University), Beijing, China
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Galve P, Rodriguez-Vila B, Herraiz J, García-Vázquez V, Malpica N, Udias J, Torrado-Carvajal A. Recent advances in combined Positron Emission Tomography and Magnetic Resonance Imaging. JOURNAL OF INSTRUMENTATION 2024; 19:C01001. [DOI: 10.1088/1748-0221/19/01/c01001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/09/2024]
Abstract
Abstract
Hybrid imaging modalities combine two or more medical imaging techniques offering exciting new possibilities to image the structure, function and biochemistry of the human body in far greater detail than has previously been possible to improve patient diagnosis. In this context, simultaneous Positron Emission Tomography and Magnetic Resonance (PET/MR) imaging offers great complementary information, but it also poses challenges from the point of view of hardware and software compatibility. The PET signal may interfere with the MR magnetic field and vice-versa, posing several challenges and constrains in the PET instrumentation for PET/MR systems. Additionally, anatomical maps are needed to properly apply attenuation and scatter corrections to the resulting reconstructed PET images, as well motion estimates to minimize the effects of movement throughout the acquisition. In this review, we summarize the instrumentation implemented in modern PET scanners to overcome these limitations, describing the historical development of hybrid PET/MR scanners. We pay special attention to the methods used in PET to achieve attenuation, scatter and motion correction when it is combined with MR, and how both imaging modalities may be combined in PET image reconstruction algorithms.
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Du J, Jones T. Technical opportunities and challenges in developing total-body PET scanners for mice and rats. EJNMMI Phys 2023; 10:2. [PMID: 36592266 PMCID: PMC9807733 DOI: 10.1186/s40658-022-00523-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Accepted: 12/20/2022] [Indexed: 01/03/2023] Open
Abstract
Positron emission tomography (PET) is the most sensitive in vivo molecular imaging technique available. Small animal PET has been widely used in studying pharmaceutical biodistribution and disease progression over time by imaging a wide range of biological processes. However, it remains true that almost all small animal PET studies using mouse or rat as preclinical models are either limited by the spatial resolution or the sensitivity (especially for dynamic studies), or both, reducing the quantitative accuracy and quantitative precision of the results. Total-body small animal PET scanners, which have axial lengths longer than the nose-to-anus length of the mouse/rat and can provide high sensitivity across the entire body of mouse/rat, can realize new opportunities for small animal PET. This article aims to discuss the technical opportunities and challenges in developing total-body small animal PET scanners for mice and rats.
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Affiliation(s)
- Junwei Du
- grid.27860.3b0000 0004 1936 9684Department of Biomedical Engineering, University of California at Davis, Davis, CA 95616 USA
| | - Terry Jones
- grid.27860.3b0000 0004 1936 9684Department of Radiology, University of California at Davis, Davis, CA 95616 USA
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Multi-photon time-of-flight MLEM application for the positronium imaging in J-PET. BIO-ALGORITHMS AND MED-SYSTEMS 2022. [DOI: 10.2478/bioal-2022-0082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Abstract
We develop a positronium imaging method for the Jagiellonian PET (J-PET) scanners based on the time-of-flight maximum likelihood expectation maximisation (TOF MLEM). The system matrix elements are calculated on-the-fly for the coincidences comprising two annihilation and one de-excitation photons that originate from the ortho-positronium (o-Ps) decay. Using the Geant4 library, a Monte Carlo simulation was conducted for four cylindrical 22Na sources of β+ decay with diverse o-Ps mean lifetimes, placed symmetrically inside the two JPET prototypes. The estimated time differences between the annihilation and the positron emission were aggregated into histograms (one per voxel), updated by the weights of the activities reconstructed by TOF MLEM. The simulations were restricted to include only the o-Ps decays into back-to-back photons, allowing a linear fitting model to be employed for the estimation of the mean lifetime from each histogram built in the log scale. To suppress the noise, the exclusion of voxels with activity below 2% – 10% of the peak was studied. The estimated o-Ps mean lifetimes were consistent with the simulation and distributed quasi -uniformly at high MLEM iterations. The proposed positronium imaging technique can be further upgraded to include various correction factors, as well as be modified according to realistic o-Ps decay models.
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Qi J, Huang B. Positronium Lifetime Image Reconstruction for TOF PET. IEEE TRANSACTIONS ON MEDICAL IMAGING 2022; 41:2848-2855. [PMID: 35584079 PMCID: PMC9829407 DOI: 10.1109/tmi.2022.3174561] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Positron emission tomography is widely used in clinical and preclinical applications. Positronium lifetime carries information about the tissue microenvironment where positrons are emitted, but such information has not been captured because of two technical challenges. One challenge is the low sensitivity in detecting triple coincidence events. This problem has been mitigated by the recent developments of PET scanners with long (1-2 m) axial field of view. The other challenge is the low spatial resolution of the positronium lifetime images formed by existing methods that is determined by the time-of-flight (TOF) resolution (200-500 ps) of existing PET scanners. This paper solves the second challenge by developing a new image reconstruction method to generate high-resolution positronium lifetime images using existing TOF PET. Simulation studies demonstrate that the proposed method can reconstruct positronium lifetime images at much better spatial resolution than the limit set by the TOF resolution of the PET scanner. The proposed method opens up the possibility of performing positronium lifetime imaging using existing TOF PET scanners. The lifetime information can be used to understand the tissue microenvironment in vivo which could facilitate the study of disease mechanism and selection of proper treatments.
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Li A, Xie Q, Huang J, Xiao P. Evaluation of applying space-variant resolution modeling to attenuation correction in PET. Biomed Phys Eng Express 2022; 8:045009. [PMID: 35623332 DOI: 10.1088/2057-1976/ac741c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Attenuation correction aims to recover the underestimated tracer uptake and improve the image contrast recovery in positron emission tomography (PET). However, traditional ray-tracing-based projection of attenuation maps is inaccurate as some physical effects are not considered, such as finite crystal size, inter-crystal penetration and inter-crystal scatter. In this study, we evaluated the effects of applying resolution modeling (RM) to attenuation correction by implementing space-variant RM to complement physical effects which are usually omitted in the traditional projection model. We verified this method on a brain PET scanner developed by our group, in both Monte Carlo simulation and real-world data, in comparison with space-invariant Gaussian RM, average-depth-of-interaction, and multi-ray tracing methods. The results indicate that the space-variant RM is superior in terms of artifacts reduction and contrast recovery.
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Affiliation(s)
- Ang Li
- College of life science and technology, Huazhong University of Science and Technology, 1037 Luoyu Road, Hongshan District, Wuhan City, Hubei Province, China, Wuhan, 430074, CHINA
| | - Qingguo Xie
- Biomedical Engineering Department, Huazhong University of Science and Technology, Wuhan, Hubei 430074, Wuhan, Hubei, 430074, CHINA
| | - Jing Huang
- Huazhong University of Science and Technology, 1037 Luoyu Road, Hongshan District, Wuhan City, Hubei Province, China, Wuhan, 430074, CHINA
| | - Peng Xiao
- Biomedical Engineering Department, Huazhong University of Science and Technology, Wuhan, Hubei 430074, Wuhan, Hubei, 430074, CHINA
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Clarkson E, Kupinski M. Effect on null spaces of list-mode imaging systems due to increasing the number of attributes. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2022; 39:959-968. [PMID: 36215457 DOI: 10.1364/josaa.443326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 03/14/2022] [Indexed: 06/16/2023]
Abstract
There are two types of uncertainty in image reconstructions from list-mode data: statistical and deterministic. One source of statistical uncertainty is the finite number of attributes of the detected particles, which are sampled from a probability distribution on the attribute space. A deterministic source of uncertainty is the effect that null functions of the imaging operator have on reconstructed pixel or voxel values. Quantifying the reduction in this deterministic source of uncertainty when more attributes are measured for each detected particle is the subject of this work. Specifically, upper bounds on an error metric are derived to quantify the error introduced in the reconstruction by the presence of null functions, and these upper bounds are shown to be reduced when the number of attributes is increased. These bounds are illustrated with an example of a two-dimensional single photon emission computed tomography (SPECT) system where the depth of interaction in the scintillation crystal is added to the attribute vector.
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Filipović M, Dautremer T, Comtat C, Stute S, Barat É. Reconstruction, analysis and interpretation of posterior probability distributions of PET images, using the posterior bootstrap. Phys Med Biol 2021; 66. [PMID: 34062518 DOI: 10.1088/1361-6560/ac06e1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 06/01/2021] [Indexed: 11/12/2022]
Abstract
The uncertainty of reconstructed PET images remains difficult to assess and to interpret for the use in diagnostic and quantification tasks. Here we provide (1) an easy-to-use methodology for uncertainty assessment for almost any Bayesian model in PET reconstruction from single datasets and (2) a detailed analysis and interpretation of produced posterior image distributions. We apply a recent posterior bootstrap framework to the PET image reconstruction inverse problem and obtain simple parallelizable algorithms based on random weights and on existing maximuma posteriori(MAP) (posterior maximum) optimization-based algorithms. Posterior distributions are produced, analyzed and interpreted for several common Bayesian models. Their relationship with the distribution of the MAP image estimate over multiple dataset realizations is exposed. The coverage properties of posterior distributions are validated. More insight is obtained for the interpretation of posterior distributions in order to open the way for including uncertainty information into diagnostic and quantification tasks.
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Affiliation(s)
- Marina Filipović
- Université Paris-Saclay, CEA, CNRS, Inserm, BioMaps, Service Hospitalier Frédéric Joliot, Orsay, France
| | - Thomas Dautremer
- CEA, LIST, Laboratory of Systems Modelling and Simulation, Gif-sur-Yvette, France
| | - Claude Comtat
- Université Paris-Saclay, CEA, CNRS, Inserm, BioMaps, Service Hospitalier Frédéric Joliot, Orsay, France
| | - Simon Stute
- Nuclear Medicine Department, University Hospital, Nantes, France.,CRCINA, INSERM, CNRS, Université d'Angers, Université de Nantes, Nantes, France
| | - Éric Barat
- CEA, LIST, Laboratory of Systems Modelling and Simulation, Gif-sur-Yvette, France
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Clarkson E, Kupinski M. Effect on null spaces of list-mode imaging systems due to increasing the size of attribute space. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2021; 38:387-394. [PMID: 33690468 PMCID: PMC8101067 DOI: 10.1364/josaa.403016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Accepted: 01/18/2021] [Indexed: 06/12/2023]
Abstract
An upper bound is derived for a figure of merit that quantifies the error in reconstructed pixel or voxel values induced by the presence of null functions for any list-mode system. It is shown that this upper bound decreases as the region in attribute space occupied by the allowable attribute vectors expands. This upper bound allows quantification of the reduction in this error when this type of expansion is implemented. Of course, reconstruction error is also caused by system noise in the data, which has to be treated statistically, but we will not be addressing that problem here. This method is not restricted to pixelized or voxelized reconstructions and can in fact be applied to any region of interest. The upper bound for pixelized reconstructions is demonstrated on a list-mode 2D Radon transform example. The expansion in the attribute space is implemented by doubling the number of views. The results show how the pixel size and number of views both affect the upper bound on reconstruction error from null functions. This reconstruction error can be averaged over all pixels to give a single number or can be plotted as a function on the pixel grid. Both approaches are demonstrated for the example system. In conclusion, this method can be applied to any list-mode system for which the system operator is known and could be used in the design of the systems and reconstruction algorithms.
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Affiliation(s)
- Eric Clarkson
- Department of Medical Imaging, University of Arizona, Tucson, Arizona 85721, USA
| | - Meredith Kupinski
- College of Optical Sciences, University of Arizona, Tucson, Arizona 85721, USA
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Abstract
Total-body PET image reconstruction follows a similar procedure to the image reconstruction process for standard whole-body PET scanners. One unique aspect of total-body imaging is simultaneous coverage of the entire human body, which makes it convenient to perform total-body dynamic PET scans. Therefore, four-dimensional dynamic PET reconstruction and parametric imaging are of great interest in total-body imaging. This article covers some basics of PET image reconstruction and then focuses on three- and four-dimensional PET reconstruction for total-body imaging. Methods for image formation from raw measurements in total-body PET are described. Challenges and opportunities in total-body PET image reconstruction are discussed.
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Affiliation(s)
- Jinyi Qi
- Department of Biomedical Engineering, University of California, One Shields Avenue, Davis, CA 95616, USA.
| | - Samuel Matej
- Department of Radiology, University of Pennsylvania, 3620 Hamilton Walk, John Morgan Building, Room 156A, Philadelphia, PA 19104-6061, USA
| | - Guobao Wang
- Department of Radiology, University of California Davis Medical Center, Lawrence J. Ellison Ambulatory Care Center Building, Suite 3100, 4860 Y Street, Sacramento, CA 95817, USA
| | - Xuezhu Zhang
- Department of Biomedical Engineering, University of California, One Shields Avenue, Davis, CA 95616, USA
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Galve P, Udias JM, Lopez-Montes A, Arias-Valcayo F, Vaquero JJ, Desco M, Herraiz JL. Super-Iterative Image Reconstruction in PET. IEEE TRANSACTIONS ON COMPUTATIONAL IMAGING 2021; 7:248-257. [DOI: 10.1109/tci.2021.3059107] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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Zhang H, Wang Y, Qi J, Abbaszadeh S. Penalized maximum-likelihood reconstruction for improving limited-angle artifacts in a dedicated head and neck PET system. Phys Med Biol 2020; 65:165016. [PMID: 32325441 PMCID: PMC7483847 DOI: 10.1088/1361-6560/ab8c92] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
Positron emission tomography (PET) suffers from limited spatial resolution in current head and neck cancer management. We are building a dual-panel high-resolution PET system to aid the detection of tumor involvement in small lymph nodes ([Formula: see text]10 mm in diameter). The system is based on cadmium zinc telluride (CZT) detectors with cross-strip electrode readout (1 mm anode pitch and 5 mm cathode pitch). One challenge of the dual-panel system is that the limited angular coverage of the imaging volume leads to artifacts in reconstructed images, such as the elongation of lesions. In this work, we leverage a penalized maximum-likelihood (PML) reconstruction for the limited-angle PET system. The dissimilarity between the image to be reconstructed and a prior image from a low-resolution whole-body scanner is penalized. An image-based resolution model is incorporated into the regularization. Computer simulations were used to evaluate the performance of the method. Results demonstrate that the elongation of the 6-mm and 8-mm diameter hot spheres is eliminated with the regularization strength γ being 0.02 or larger. The PML reconstruction yields higher contrast recovery coefficient (CRC) of hot spheres compared to the maximum-likelihood reconstruction, as well as the low-resolution whole-body image, across all hot sphere sizes tested (3, 4, 6, and 8 mm). The method studied in this work provides a way to mitigate the limited-angle artifacts in the reconstruction from limited-angle PET data, making the high-resolution dual-panel dedicated head and neck PET system promising for head and neck cancer management.
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Affiliation(s)
- Hengquan Zhang
- Department of Nuclear, Plasma, and Radiological Engineering, University of Illinois at Urbana-Champaign, Champaign, IL, United States of America
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Xie Z, Baikejiang R, Li T, Zhang X, Gong K, Zhang M, Qi W, Asma E, Qi J. Generative adversarial network based regularized image reconstruction for PET. Phys Med Biol 2020; 65:125016. [PMID: 32357352 PMCID: PMC7413644 DOI: 10.1088/1361-6560/ab8f72] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Positron emission tomography (PET) is an ill-posed inverse problem and suffers high noise due to limited number of detected events. Prior information can be used to improve the quality of reconstructed PET images. Deep neural networks have also been applied to regularized image reconstruction. One method is to use a pretrained denoising neural network to represent the PET image and to perform a constrained maximum likelihood estimation. In this work, we propose to use a generative adversarial network (GAN) to further improve the network performance. We also modify the objective function to include a data-matching term on the network input. Experimental studies using computer-based Monte Carlo simulations and real patient datasets demonstrate that the proposed method leads to noticeable improvements over the kernel-based and U-net-based regularization methods in terms of lesion contrast recovery versus background noise trade-offs.
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Affiliation(s)
- Zhaoheng Xie
- Department of Biomedical Engineering University of California Davis CA United States of America
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15
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Wei S, Vaska P. Evaluation of quantitative, efficient image reconstruction for VersaPET, a compact PET system. Med Phys 2020; 47:2852-2868. [PMID: 32219853 DOI: 10.1002/mp.14158] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2019] [Revised: 03/13/2020] [Accepted: 03/13/2020] [Indexed: 11/09/2022] Open
Abstract
PURPOSE Previously we developed a high-resolution positron emission tomography (PET) system-VersaPET-characterized by a block geometry with relatively large axial and transaxial interblock gaps and a compact geometry susceptible to parallax blurring effects. In this work, we report the qualitative and quantitative evaluation of a graphic processing unit (GPU)-accelerated maximum-likelihood by expectation-maximization (MLEM) image reconstruction framework for VersaPET which features accurate system geometry and projection space point-spread-function (PSF) modeling. METHODS We combined the ray-tracing module from software for tomographic image reconstruction (STIR), an open-source PET image reconstruction package, with VersaPET's exact block geometry for the geometric system matrix. Point-spread-function modeling of crystal penetration and scattering was achieved by a custom Monte-Carlo simulation for projection space blurring in all dimensions. We also parallelized the reconstruction in GPU taking advantage of the system's symmetry for PSF computation. To investigate the effects of PSF width, we generated and studied multiple kernels between one that reflects the true LYSO density in the MC simulation and another that reflects geometry only (no PSF). GATE simulations of hot and cold-sphere phantoms with spheres of different sizes, real microDerenzo phantom, and human blood vessel data were used to characterize the quantitative and qualitative performances of the reconstruction. RESULTS Reconstruction with an accurate system geometry effectively improved image quality compared to STIR (version 3.0) which assumes an idealized system geometry. Reconstructions of GATE-simulated hot-sphere phantom data showed that all PSF kernels achieved superior performance in contrast recovery and bias reduction compared to using no PSF, but may introduce edge artifact and lumped background noise pattern depending on the width of PSF kernels. Cold-sphere phantom simulation results also indicated improvement in contrast recovery and quantification with PSF modeling (compared to no PSF) for 5 and 10 mm cold spheres. Real microDerenzo phantom images with the PSF kernel that reflects the true LYSO density showed degraded resolving power of small sectors that could be resolved more clearly by underestimated PSF kernels, which is consistent with recent literature despite differences in scanner geometries and in approaches to system model estimation. The human vessel results resemble those of the hot-sphere phantom simulation with the PSF kernel that reflects the true LYSO density achieving the highest peak in the time activity curve (TAC) and similar lumped noise pattern. CONCLUSIONS We fully evaluated a practical MLEM reconstruction framework that we developed for VersaPET in terms of qualitative and quantitative performance. Different PSF kernels may be adopted for improving the results of specific imaging tasks but the underlying reasons for the variation in optimal kernel for the real and simulation studies requires further study.
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Affiliation(s)
- Shouyi Wei
- Department of Biomedical Engineering, Stony Brook University, Stony Brook, NY, 11794, USA
| | - Paul Vaska
- Departments of Biomedical Engineering and Radiology, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, 11794, USA
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Clarkson E, Kupinski M. Quantifying the loss of information from binning list-mode data. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2020; 37:450-457. [PMID: 32118929 PMCID: PMC8101068 DOI: 10.1364/josaa.375317] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2019] [Accepted: 01/12/2020] [Indexed: 06/10/2023]
Abstract
List-mode data are increasingly being used in single photon emission computed tomography (SPECT) and positron emission tomography (PET) imaging, among other imaging modalities. However, there are still many imaging designs that effectively bin list-mode data before image reconstruction or other estimation tasks are performed. Intuitively, the binning operation should result in a loss of information. In this work, we show that this is true for Fisher information and provide a computational method for quantifying the information loss. In the end, we find that the information loss depends on three factors. The first factor is related to the smoothness of the mean data function for the list-mode data. The second factor is the actual object being imaged. Finally, the third factor is the binning scheme in relation to the other two factors.
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Affiliation(s)
- Eric Clarkson
- College of Optical Sciences, University of Arizona, Tucson, Arizona 85721, USA
- Department of Medical Imaging, University of Arizona, Tucson, Arizona 85724, USA
| | - Meredith Kupinski
- College of Optical Sciences, University of Arizona, Tucson, Arizona 85721, USA
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17
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Chen G, Weng F, Hong X, Tao W, Zhao Z, Peng Q, Huang Q. Developing a 'multiPatchPET' system in GATE for a PET system design with irregular geometries. Phys Med Biol 2018; 63:17NT02. [PMID: 30089100 DOI: 10.1088/1361-6560/aad8fd] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
This work modified the commonly used Monte Carlo tool package GATE by developing a new 'multiPatchPET' system so that GATE users can easily simulate PET systems with irregular geometries. The motivation was to design a brain PET scanner with high sensitivity. It is known that compact PET scanners with a large solid coverage angle can achieve high sensitivity with fewer scintillation detectors, and thus have the potential to provide better image quality in brain PET imaging than conventional ring PET scanners. However, considering a straightforward example with the largest possible solid angle, a spherical PET scanner is hard to manufacture. A more practical alternative would be a sphere-like polyhedral PET scanner with flat detector patches. Moreover, when monolithic scintillators are chosen to construct these flat detector modules, detection efficiency is further improved. Thus, we plan to design a sphere-like polyhedral PET scanner made up of monolithic scintillators. Unfortunately, in our design study, we found that simulating such a scanner with the latest GATE version (8.0) was not trivial, since no predefined systems could be used. In this work we introduced a 'multiPatchPET' system to GATE, which we and other GATE users will be able to use to develop PET scanners with any irregular geometry and any shape of patch. To validate our modification, a single block detector and an mCT scanner were simulated via both the original 'ecat' system and the new 'multiPatchPET' system. The results show no difference in terms of the detecting efficiency and reconstruction image. Then we used the 'multiPatchPET' system to simulate an 86 surface polyhedral brain PET scanner. Compared with two cylindrical brain scanners, the polyhedral brain scanner shows a higher sensitivity and has fewer noisy images. Thus, it was proved that our modification, which is accessible to the nuclear imaging research community, equipped GATE with a powerful and user-friendly tool to simulate complex scanners with irregular patches easily.
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Affiliation(s)
- Gaoyu Chen
- School of Biomedical Engineering, Shanghai Jiao Tong University, People's Republic of China. Department of Nuclear Medicine, Ruijin Hospital, Shanghai, People's Republic of China
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18
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Tao W, Chen G, Weng F, Zan Y, Zhao Z, Peng Q, Xu J, Huang Q. Simulation study of a high-performance brain PET system with dodecahedral geometry. Med Phys 2018; 45:3297-3304. [PMID: 29799629 DOI: 10.1002/mp.12996] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2017] [Revised: 05/16/2018] [Accepted: 05/16/2018] [Indexed: 11/11/2022] Open
Abstract
PURPOSE In brain imaging, the spherical PET system achieves the highest sensitivity when the solid angle is concerned. However, it is not practical. In this work, we designed an alternative sphere-like scanner, the dodecahedral scanner, which has a high sensitivity in imaging and a high feasibility to manufacture. We simulated this system and compared the performance with a few other dedicated brain PET systems. METHODS Monte Carlo simulations were conducted to generate data of the dedicated brain PET system with the dodecahedral geometry (11 regular pentagon detectors). The data were then reconstructed using the in-house developed software with the fully three-dimensional maximum-likelihood expectation maximization (3D-MLEM) algorithm. RESULTS Results show that the proposed system has a high-sensitivity distribution for the whole field of view (FOV). With a depth-of-interaction (DOI) resolution around 6.67 mm, the proposed system achieves the spatial resolution of 1.98 mm. Our simulation study also shows that the proposed system improves the image contrast and reduces noise compared with a few other dedicated brain PET systems. Finally, simulations with the Hoffman phantom show the potential application of the proposed system in clinical applications. CONCLUSIONS In conclusion, the proposed dodecahedral PET system is potential for widespread applications in high-sensitivity, high-resolution PET imaging, to lower the injected dose.
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Affiliation(s)
- Weijie Tao
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China.,Department of Nuclear Medicine, Ruijin Hospital, Shanghai, 200240, China
| | - Gaoyu Chen
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Fenghua Weng
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Yunlong Zan
- University of Michigan - Shanghai Jiao Tong University Joint Institute, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Zhixiang Zhao
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Qiyu Peng
- Lawrence Berkeley National Laboratory, Berkeley, 94720, CA, USA
| | - Jianfeng Xu
- School of Mechanical Science and Engineering, Huazhong University of Science and Technology, Wuhan, Hubei, 430074, China
| | - Qiu Huang
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China.,Department of Nuclear Medicine, Ruijin Hospital, Shanghai, 200240, China
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19
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Berg E, Zhang X, Bec J, Judenhofer MS, Patel B, Peng Q, Kapusta M, Schmand M, Casey ME, Tarantal AF, Qi J, Badawi RD, Cherry SR. Development and Evaluation of mini-EXPLORER: A Long Axial Field-of-View PET Scanner for Nonhuman Primate Imaging. J Nucl Med 2018; 59:993-998. [PMID: 29419483 DOI: 10.2967/jnumed.117.200519] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2017] [Accepted: 12/13/2017] [Indexed: 12/11/2022] Open
Abstract
We describe a long axial field-of-view (FOV) PET scanner for high-sensitivity and total-body imaging of nonhuman primates and present the physical performance and first phantom and animal imaging results. Methods: The mini-EXPLORER PET scanner was built using the components of a clinical scanner reconfigured with a detector ring diameter of 43.5 cm and an axial length of 45.7 cm. National Electrical Manufacturers Association (NEMA) NU-2 and NU-4 phantoms were used to measure sensitivity and count rate performance. Reconstructed spatial resolution was investigated by imaging a radially stepped point source and a Derenzo phantom. The effect of the wide acceptance angle was investigated by comparing performance with maximum acceptance angles of 14°-46°. Lastly, an initial assessment of the in vivo performance of the mini-EXPLORER was undertaken with a dynamic 18F-FDG nonhuman primate (rhesus monkey) imaging study. Results: The NU-2 total sensitivity was 5.0%, and the peak noise-equivalent count rate measured with the NU-4 monkey scatter phantom was 1,741 kcps, both obtained using the maximum acceptance angle (46°). The NU-4 scatter fraction was 16.5%, less than 1% higher than with a 14° acceptance angle. The reconstructed spatial resolution was approximately 3.0 mm at the center of the FOV, with a minor loss in axial spatial resolution (0.5 mm) when the acceptance angle increased from 14° to 46°. The rhesus monkey 18F-FDG study demonstrated the benefit of the high sensitivity of the mini-EXPLORER, including fast imaging (1-s early frames), excellent image quality (30-s and 5-min frames), and late-time-point imaging (18 h after injection), all obtained at a single bed position that captured the major organs of the rhesus monkey. Conclusion: This study demonstrated the physical performance and imaging capabilities of a long axial FOV PET scanner designed for high-sensitivity imaging of nonhuman primates. Further, the results of this study suggest that a wide acceptance angle can be used with a long axial FOV scanner to maximize sensitivity while introducing only minor trade-offs such as a small increase in scatter fraction and slightly degraded axial spatial resolution.
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Affiliation(s)
- Eric Berg
- Department of Biomedical Engineering, University of California-Davis, Davis, California
| | - Xuezhu Zhang
- Department of Biomedical Engineering, University of California-Davis, Davis, California
| | - Julien Bec
- Department of Biomedical Engineering, University of California-Davis, Davis, California
| | - Martin S Judenhofer
- Department of Biomedical Engineering, University of California-Davis, Davis, California
| | - Brijesh Patel
- Department of Biomedical Engineering, University of California-Davis, Davis, California
| | - Qiyu Peng
- Department of Biomedical Engineering, University of California-Davis, Davis, California.,Cell and Tissue Imaging Department, Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, California
| | | | | | | | - Alice F Tarantal
- Departments of Pediatrics and Cell Biology and Human Anatomy, School of Medicine, and California National Primate Research Center, University of California-Davis, Davis, California; and
| | - Jinyi Qi
- Department of Biomedical Engineering, University of California-Davis, Davis, California
| | - Ramsey D Badawi
- Department of Biomedical Engineering, University of California-Davis, Davis, California.,Department of Radiology, University of California-Davis, Sacramento, California
| | - Simon R Cherry
- Department of Biomedical Engineering, University of California-Davis, Davis, California.,Department of Radiology, University of California-Davis, Sacramento, California
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20
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Gong K, Zhou J, Tohme M, Judenhofer M, Yang Y, Qi J. Sinogram Blurring Matrix Estimation From Point Sources Measurements With Rank-One Approximation for Fully 3-D PET. IEEE TRANSACTIONS ON MEDICAL IMAGING 2017; 36:2179-2188. [PMID: 28613163 PMCID: PMC5628122 DOI: 10.1109/tmi.2017.2711479] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
Abstract
An accurate system matrix is essential in positron emission tomography (PET) for reconstructing high quality images. To reduce storage size and image reconstruction time, we factor the system matrix into a product of a geometry projection matrix and a sinogram blurring matrix. The geometric projection matrix is computed analytically and the sinogram blurring matrix is estimated from point source measurements. Previously, we have estimated a 2-D blurring matrix for a preclinical PET scanner. The 2-D blurring matrix only considers blurring effects within a transaxial sinogram and does not compensate for inter-sinogram blurring effects. For PET scanners with a long axial field of view, inter-sinogram blurring can be a major problem influencing the image quality in the axial direction. Hence, the estimation of a 4-D blurring matrix is desirable to further improve the image quality. The 4-D blurring matrix estimation is an ill-conditioned problem due to the large number of unknowns. Here, we propose a rank-one approximation for each blurring kernel image formed by a row vector of the sinogram blurring matrix to improve the stability of the 4-D blurring matrix estimation. The proposed method is applied to the simulated data as well as the real data obtained from an Inveon microPET scanner. The results show that the newly estimated 4-D blurring matrix can improve the image quality over those obtained with a 2-D blurring matrix and requires less point source scans to achieve similar image quality compared with an unconstrained 4-D blurring matrix estimation.
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Affiliation(s)
| | | | | | | | | | - Jinyi Qi
- Please address correspondence to J. Qi ()
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21
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Wang B, van Roosmalen J, Piët L, van Schie MA, Beekman FJ, Goorden MC. Voxelized ray-tracing simulation dedicated to multi-pinhole molecular breast tomosynthesis. Biomed Phys Eng Express 2017. [DOI: 10.1088/2057-1976/aa8012] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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22
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Slavine NV, Seiler SJ, McColl RW, Lenkinski RE. Image improvement method for positron emission mammography. Phys Med 2017; 39:164-173. [PMID: 28688583 DOI: 10.1016/j.ejmp.2017.06.025] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/09/2016] [Revised: 06/09/2017] [Accepted: 06/29/2017] [Indexed: 11/29/2022] Open
Abstract
PURPOSE To evaluate in clinical use a rapidly converging, efficient iterative deconvolution algorithm (RSEMD) for improving the quantitative accuracy of previously reconstructed breast images by a commercial positron emission mammography (PEM) scanner. MATERIALS AND METHODS The RSEMD method was tested on imaging data from clinical Naviscan Flex Solo II PEM scanner. This method was applied to anthropomorphic like breast phantom data and patient breast images previously reconstructed with Naviscan software to determine improvements in image resolution, signal to noise ratio (SNR) and contrast to noise ratio (CNR). RESULTS In all of the patients' breast studies the improved images proved to have higher resolution, contrast and lower noise as compared with images reconstructed by conventional methods. In general, the values of CNR reached a plateau at an average of 6 iterations with an average improvement factor of about 2 for post-reconstructed Flex Solo II PEM images. Improvements in image resolution after the application of RSEMD have also been demonstrated. CONCLUSIONS A rapidly converging, iterative deconvolution algorithm with a resolution subsets-based approach (RSEMD) that operates on patient DICOM images has been used for quantitative improvement in breast imaging. The RSEMD method can be applied to PEM images to enhance the resolution and contrast in cancer diagnosis to monitor the tumor progression at the earliest stages.
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Affiliation(s)
- Nikolai V Slavine
- Translational Research, Department of Radiology, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-9061, USA.
| | - Stephen J Seiler
- Breast Imaging, Department of Radiology, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-9061, USA
| | - Roderick W McColl
- Clinical Medical Physics, Department of Radiology, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-9061, USA
| | - Robert E Lenkinski
- Translational Research, Department of Radiology, UT Southwestern Medical Center, 5323 Harry Hines Boulevard, Dallas, TX 75390-9061, USA
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23
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Zhang M, Zhou J, Niu X, Asma E, Wang W, Qi J. Regularization parameter selection for penalized-likelihood list-mode image reconstruction in PET. Phys Med Biol 2017; 62:5114-5130. [PMID: 28402287 DOI: 10.1088/1361-6560/aa6cdf] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Penalized likelihood (PL) reconstruction has demonstrated potential to improve image quality of positron emission tomography (PET) over unregularized ordered-subsets expectation-maximization (OSEM) algorithm. However, selecting proper regularization parameters in PL reconstruction has been challenging due to the lack of ground truth and variation of penalty functions. Here we present a method to choose regularization parameters using a cross-validation log-likelihood (CVLL) function. This new method does not require any knowledge of the true image and is directly applicable to list-mode PET data. We performed statistical analysis of the mean and variance of the CVLL. The results show that the CVLL provides an unbiased estimate of the log-likelihood function calculated using the noise free data. The predicted variance can be used to verify the statistical significance of the difference between CVLL values. The proposed method was validated using simulation studies and also applied to real patient data. The reconstructed images using optimum parameters selected by the proposed method show good image quality visually.
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Affiliation(s)
- Mengxi Zhang
- Department of Biomedical Engineering, University of California, Davis, CA, United States of America
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24
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Gardiazabal J, Matthies P, Vogel J, Frisch B, Navab N, Ziegler S, Lasser T. Flexible mini gamma camera reconstructions of extended sources using step and shoot and list mode. Med Phys 2017; 43:6418. [PMID: 27908169 DOI: 10.1118/1.4966700] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE Hand- and robot-guided mini gamma cameras have been introduced for the acquisition of single-photon emission computed tomography (SPECT) images. Less cumbersome than whole-body scanners, they allow for a fast acquisition of the radioactivity distribution, for example, to differentiate cancerous from hormonally hyperactive lesions inside the thyroid. This work compares acquisition protocols and reconstruction algorithms in an attempt to identify the most suitable approach for fast acquisition and efficient image reconstruction, suitable for localization of extended sources, such as lesions inside the thyroid. METHODS Our setup consists of a mini gamma camera with precise tracking information provided by a robotic arm, which also provides reproducible positioning for our experiments. Based on a realistic phantom of the thyroid including hot and cold nodules as well as background radioactivity, the authors compare "step and shoot" (SAS) and continuous data (CD) acquisition protocols in combination with two different statistical reconstruction methods: maximum-likelihood expectation-maximization (ML-EM) for time-integrated count values and list-mode expectation-maximization (LM-EM) for individually detected gamma rays. In addition, the authors simulate lower uptake values by statistically subsampling the experimental data in order to study the behavior of their approach without changing other aspects of the acquired data. RESULTS All compared methods yield suitable results, resolving the hot nodules and the cold nodule from the background. However, the CD acquisition is twice as fast as the SAS acquisition, while yielding better coverage of the thyroid phantom, resulting in qualitatively more accurate reconstructions of the isthmus between the lobes. For CD acquisitions, the LM-EM reconstruction method is preferable, as it yields comparable image quality to ML-EM at significantly higher speeds, on average by an order of magnitude. CONCLUSIONS This work identifies CD acquisition protocols combined with LM-EM reconstruction as a prime candidate for the wider introduction of SPECT imaging with flexible mini gamma cameras in the clinical practice.
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Affiliation(s)
- José Gardiazabal
- Department of Informatics, Technische Universität München, München 80333, Germany and Klinikum Rechts der Isar, Technische Universität München, München 80333, Germany
| | - Philipp Matthies
- Department of Informatics, Technische Universität München, München 80333, Germany
| | - Jakob Vogel
- Department of Informatics, Technische Universität München, München 80333, Germany
| | - Benjamin Frisch
- Department of Informatics, Technische Universität München, München 80333, Germany
| | - Nassir Navab
- School of Engineering, Johns Hopkins University, Baltimore, Maryland 21218 and Department of Informatics, Technische Universität München, München 80333, Germany
| | - Sibylle Ziegler
- Klinikum Rechts der Isar, Technische Universität München, München, München 80333,Germany
| | - Tobias Lasser
- Department of Informatics, Technische Universität München, München 80333, Germany
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25
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Zhang Z, Ye J, Chen B, Perkins AE, Rose S, Sidky EY, Kao CM, Xia D, Tung CH, Pan X. Investigation of optimization-based reconstruction with an image-total-variation constraint in PET. Phys Med Biol 2016; 61:6055-84. [PMID: 27452653 DOI: 10.1088/0031-9155/61/16/6055] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Interest remains in reconstruction-algorithm research and development for possible improvement of image quality in current PET imaging and for enabling innovative PET systems to enhance existing, and facilitate new, preclinical and clinical applications. Optimization-based image reconstruction has been demonstrated in recent years of potential utility for CT imaging applications. In this work, we investigate tailoring the optimization-based techniques to image reconstruction for PET systems with standard and non-standard scan configurations. Specifically, given an image-total-variation (TV) constraint, we investigated how the selection of different data divergences and associated parameters impacts the optimization-based reconstruction of PET images. The reconstruction robustness was explored also with respect to different data conditions and activity up-takes of practical relevance. A study was conducted particularly for image reconstruction from data collected by use of a PET configuration with sparsely populated detectors. Overall, the study demonstrates the robustness of the TV-constrained, optimization-based reconstruction for considerably different data conditions in PET imaging, as well as its potential to enable PET configurations with reduced numbers of detectors. Insights gained in the study may be exploited for developing algorithms for PET-image reconstruction and for enabling PET-configuration design of practical usefulness in preclinical and clinical applications.
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Affiliation(s)
- Zheng Zhang
- Department of Radiology, The University of Chicago, Chicago, IL, USA
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26
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Bickell MG, Zhou L, Nuyts J. Spatially Variant Resolution Modelling for Iterative List-Mode PET Reconstruction. IEEE TRANSACTIONS ON MEDICAL IMAGING 2016; 35:1707-1718. [PMID: 26886967 DOI: 10.1109/tmi.2016.2526631] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
A spatially variant resolution modelling technique is presented which estimates the system matrix on-the-fly during iterative list-mode reconstruction. This is achieved by redistributing the endpoints of each list-mode event according to derived probability density functions describing the detector response function and photon acollinearity, at each iteration during the reconstruction. Positron range is modelled using an image-based convolution. When applying this technique it is shown that the maximum-likelihood expectation maximisation (MLEM) algorithm is not compatible with an obvious acceleration strategy. The image space reconstruction algorithm (ISRA), however, after being adapted to a list-mode based implementation, is well-suited to the implementation of the model. A comparison of ISRA and MLEM is made to confirm that ISRA is a suitable alternative to MLEM. We demonstrate that this model agrees with measured point spread functions and we present results showing an improvement in resolution recovery, particularly for off-centre objects, as compared to commercially available software, as well as the standard technique of using a stationary Gaussian convolution to model the resolution, for equal iterations and only slightly higher computation time.
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27
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Abstract
PET (positron emission tomography) scans are still in the experimental phase, as one of the newest breast cancer diagnostic techniques. There are two traditional approaches to the computation of images from data collected in PET. In the first, standard CT (computed tomography) algorithms are used on rays designated by pairs of detectors receiving coincidence events. The problem generated by this approach is that generally only the mean can be used by such algorithms. With the relatively small numbers of events in PET, and with Poisson statistics for which variance equals the mean, the noise sensivity of standard CT algorithms becomes limiting. This is exasperated further by 3D imaging with cylindrical arrays of detectors. Statistical CT algorithms take the variance into account. As in the list-mode approach, we consider each coincidence event individually. However, we estimate the location of the annihilation event that caused each coincidence event, one by one, based on the previously assigned location of events processed earlier. The estimated annihilation locations form the image. To accomplish this, we construct a probability distribution along each coincidence line. This is generated from previous annihilation points by density estimation. In this paper we present our density estimation approach to positron emission tomography. Nonparametric methods of density estimation are overviewed followed by numerical examples. Our goal here is to determine which density estimation approach is most suitable for PET.
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Affiliation(s)
- Barbara Pawlak
- Department of Electrical and Computer Engineering, University of Manitoba, Winnipeg, MB, R3T2N2, Canada
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28
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Mathews AJ, Li K, Komarov S, Wang Q, Ravindranath B, O'Sullivan JA, Tai YC. A generalized reconstruction framework for unconventional PET systems. Med Phys 2016; 42:4591-609. [PMID: 26233187 DOI: 10.1118/1.4923180] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Abstract
PURPOSE Quantitative estimation of the radionuclide activity concentration in positron emission tomography (PET) requires precise modeling of PET physics. The authors are focused on designing unconventional PET geometries for specific applications. This work reports the creation of a generalized reconstruction framework, capable of reconstructing tomographic PET data for systems that use right cuboidal detector elements positioned at arbitrary geometry using a regular Cartesian grid of image voxels. METHODS The authors report on a variety of design choices and optimization for the creation of the generalized framework. The image reconstruction algorithm is maximum likelihood-expectation-maximization. System geometry can be specified using a simple script. Given the geometry, a symmetry seeking algorithm finds existing symmetry in the geometry with respect to the image grid to improve the memory usage/speed. Normalization is approached from a geometry independent perspective. The system matrix is computed using the Siddon's algorithm and subcrystal approach. The program is parallelized through open multiprocessing and message passing interface libraries. A wide variety of systems can be modeled using the framework. This is made possible by modeling the underlying physics and data correction, while generalizing the geometry dependent features. RESULTS Application of the framework for three novel PET systems, each designed for a specific application, is presented to demonstrate the robustness of the framework in modeling PET systems of unconventional geometry. Three PET systems of unconventional geometry are studied. (1) Virtual-pinhole half-ring insert integrated into Biograph-40: although the insert device improves image quality over conventional whole-body scanner, the image quality varies depending on the position of the insert and the object. (2) Virtual-pinhole flat-panel insert integrated into Biograph-40: preliminary results from an investigation into a modular flat-panel insert are presented. (3) Plant PET system: a reconfigurable PET system for imaging plants, with resolution of greater than 3.3 mm, is shown. Using the automated symmetry seeking algorithm, the authors achieved a compression ratio of the storage and memory requirement by a factor of approximately 50 for the half-ring and flat-panel systems. For plant PET system, the compression ratio is approximately five. The ratio depends on the level of symmetry that exists in different geometries. CONCLUSIONS This work brings the field closer to arbitrary geometry reconstruction. A generalized reconstruction framework can be used to validate multiple hypotheses and the effort required to investigate each system is reduced. Memory usage/speed can be improved with certain optimizations.
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Affiliation(s)
- Aswin John Mathews
- Department of Electrical and Systems Engineering, Washington University in St. Louis, St. Louis, Missouri 63130
| | - Ke Li
- Department of Electrical and Systems Engineering, Washington University in St. Louis, St. Louis, Missouri 63130
| | - Sergey Komarov
- Mallinckrodt Institute of Radiology, Washington University in St. Louis, St. Louis, Missouri 63110
| | - Qiang Wang
- Mallinckrodt Institute of Radiology, Washington University in St. Louis, St. Louis, Missouri 63110
| | - Bosky Ravindranath
- Mallinckrodt Institute of Radiology, Washington University in St. Louis, St. Louis, Missouri 63110
| | - Joseph A O'Sullivan
- Department of Electrical and Systems Engineering, Washington University in St. Louis, St. Louis, Missouri 63130
| | - Yuan-Chuan Tai
- Mallinckrodt Institute of Radiology, Washington University in St. Louis, St. Louis, Missouri 63110
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29
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Gong K, Majewski S, Kinahan PE, Harrison RL, Elston BF, Manjeshwar R, Dolinsky S, Stolin AV, Brefczynski-Lewis JA, Qi J. Designing a compact high performance brain PET scanner-simulation study. Phys Med Biol 2016; 61:3681-97. [PMID: 27081753 DOI: 10.1088/0031-9155/61/10/3681] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The desire to understand normal and disordered human brain function of upright, moving persons in natural environments motivates the development of the ambulatory micro-dose brain PET imager (AMPET). An ideal system would be light weight but with high sensitivity and spatial resolution, although these requirements are often in conflict with each other. One potential approach to meet the design goals is a compact brain-only imaging device with a head-sized aperture. However, a compact geometry increases parallax error in peripheral lines of response, which increases bias and variance in region of interest (ROI) quantification. Therefore, we performed simulation studies to search for the optimal system configuration and to evaluate the potential improvement in quantification performance over existing scanners. We used the Cramér-Rao variance bound to compare the performance for ROI quantification using different scanner geometries. The results show that while a smaller ring diameter can increase photon detection sensitivity and hence reduce the variance at the center of the field of view, it can also result in higher variance in peripheral regions when the length of detector crystal is 15 mm or more. This variance can be substantially reduced by adding depth-of-interaction (DOI) measurement capability to the detector modules. Our simulation study also shows that the relative performance depends on the size of the ROI, and a large ROI favors a compact geometry even without DOI information. Based on these results, we propose a compact 'helmet' design using detectors with DOI capability. Monte Carlo simulations show the helmet design can achieve four-fold higher sensitivity and resolve smaller features than existing cylindrical brain PET scanners. The simulations also suggest that improving TOF timing resolution from 400 ps to 200 ps also results in noticeable improvement in image quality, indicating better timing resolution is desirable for brain imaging.
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Affiliation(s)
- Kuang Gong
- Department of Biomedical Engineering, University of California, Davis, CA 95616, USA
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Abstract
This paper provides a review and an update on time-of-flight PET imaging with a focus on PET instrumentation, ranging from hardware design to software algorithms. We first present a short introduction to PET, followed by a description of TOF PET imaging and its history from the early days. Next, we introduce the current state-of-art in TOF PET technology and briefly summarize the benefits of TOF PET imaging. This is followed by a discussion of the various technological advancements in hardware (scintillators, photo-sensors, electronics) and software (image reconstruction) that have led to the current widespread use of TOF PET technology, and future developments that have the potential for further improvements in the TOF imaging performance. We conclude with a discussion of some new research areas that have opened up in PET imaging as a result of having good system timing resolution, ranging from new algorithms for attenuation correction, through efficient system calibration techniques, to potential for new PET system designs.
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Affiliation(s)
- Suleman Surti
- Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA.
| | - Joel S Karp
- Department of Radiology, University of Pennsylvania, Philadelphia, PA 19104, USA
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31
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Zhang M, Zhou J, Yang Y, Rodríguez-Villafuerte M, Qi J. Efficient system modeling for a small animal PET scanner with tapered DOI detectors. Phys Med Biol 2015; 61:461-74. [PMID: 26682623 DOI: 10.1088/0031-9155/61/2/461] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
A prototype small animal positron emission tomography (PET) scanner for mouse brain imaging has been developed at UC Davis. The new scanner uses tapered detector arrays with depth of interaction (DOI) measurement. In this paper, we present an efficient system model for the tapered PET scanner using matrix factorization and a virtual scanner geometry. The factored system matrix mainly consists of two components: a sinogram blurring matrix and a geometrical matrix. The geometric matrix is based on a virtual scanner geometry. The sinogram blurring matrix is estimated by matrix factorization. We investigate the performance of different virtual scanner geometries. Both simulation study and real data experiments are performed in the fully 3D mode to study the image quality under different system models. The results indicate that the proposed matrix factorization can maintain image quality while substantially reduce the image reconstruction time and system matrix storage cost. The proposed method can be also applied to other PET scanners with DOI measurement.
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Affiliation(s)
- Mengxi Zhang
- Department of Biomedical Engineering, University of California-Davis, One Shields Avenue, Davis, CA 95616, USA
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32
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Fast GPU-based computation of spatial multigrid multiframe LMEM for PET. Med Biol Eng Comput 2015; 53:791-803. [DOI: 10.1007/s11517-015-1284-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2014] [Accepted: 03/23/2015] [Indexed: 10/23/2022]
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33
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Peng Q, Choong WS, Vu C, Huber JS, Janecek M, Wilson D, Huesman RH, Qi J, Zhou J, Moses WW. Performance of the Tachyon Time-of-Flight PET Camera. IEEE TRANSACTIONS ON NUCLEAR SCIENCE 2015; 62:111-119. [PMID: 26594057 PMCID: PMC4652946 DOI: 10.1109/tns.2014.2375176] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
We have constructed and characterized a time-of-flight Positron Emission Tomography (TOF PET) camera called the Tachyon. The Tachyon is a single-ring Lutetium Oxyorthosilicate (LSO) based camera designed to obtain significantly better timing resolution than the ~ 550 ps found in present commercial TOF cameras, in order to quantify the benefit of improved TOF resolution for clinically relevant tasks. The Tachyon's detector module is optimized for timing by coupling the 6.15 × 25 mm2 side of 6.15 × 6.15 × 25 mm3 LSO scintillator crystals onto a 1-inch diameter Hamamatsu R-9800 PMT with a super-bialkali photocathode. We characterized the camera according to the NEMA NU 2-2012 standard, measuring the energy resolution, timing resolution, spatial resolution, noise equivalent count rates and sensitivity. The Tachyon achieved a coincidence timing resolution of 314 ps +/- ps FWHM over all crystal-crystal combinations. Experiments were performed with the NEMA body phantom to assess the imaging performance improvement over non-TOF PET. The results show that at a matched contrast, incorporating 314 ps TOF reduces the standard deviation of the contrast by a factor of about 2.3.
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Affiliation(s)
- Q. Peng
- Structural Biology and Imaging Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - W.-S. Choong
- Structural Biology and Imaging Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - C. Vu
- Structural Biology and Imaging Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - J. S. Huber
- Structural Biology and Imaging Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - M. Janecek
- Structural Biology and Imaging Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - D. Wilson
- Structural Biology and Imaging Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - R. H. Huesman
- Structural Biology and Imaging Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
| | - Jinyi Qi
- Department of Biomedical Engineering, University of California, Davis, Davis, CA 95616 USA
| | - Jian Zhou
- Department of Biomedical Engineering, University of California, Davis, Davis, CA 95616 USA
| | - W. W. Moses
- Structural Biology and Imaging Department, Lawrence Berkeley National Laboratory, Berkeley, CA 94720 USA
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34
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Abstract
Time-of-flight (TOF) PET was initially introduced in the early days of PET. The TOF PET scanners developed in the 1980s had limited sensitivity and spatial resolution, were operated in 2-dimensional mode with septa, and used analytic image reconstruction methods. The current generation of TOF PET scanners has the highest sensitivity and spatial resolution ever achieved in commercial whole-body PET, is operated in fully-3-dimensional mode, and uses iterative reconstruction with full system modeling. Previously, it was shown that TOF provides a gain in image signal-to-noise ratio that is proportional to the square root of the object size divided by the system timing resolution. With oncologic studies being the primary application of PET, more recent work has shown that in modern TOF PET scanners there is an improved tradeoff between lesion contrast, image noise, and total imaging time, leading to a combination of improved lesion detectability, reduced scan time or injected dose, and more accurate and precise lesion uptake measurement. Because the benefit of TOF PET is also higher for heavier patients, clinical performance is more uniform over all patient sizes.
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Affiliation(s)
- Suleman Surti
- Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania
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35
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Cao X, Xie Q, Xiao P. A regularized relaxed ordered subset list-mode reconstruction algorithm and its preliminary application to undersampling PET imaging. Phys Med Biol 2014; 60:49-66. [DOI: 10.1088/0031-9155/60/1/49] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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36
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Shao Y, Sun X, Lou K, Zhu XR, Mirkovic D, Poenisch F, Grosshans D. In-beam PET imaging for on-line adaptive proton therapy: an initial phantom study. Phys Med Biol 2014; 59:3373-88. [DOI: 10.1088/0031-9155/59/13/3373] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Zhou J, Qi J. Efficient fully 3D list-mode TOF PET image reconstruction using a factorized system matrix with an image domain resolution model. Phys Med Biol 2014; 59:541-59. [PMID: 24434568 DOI: 10.1088/0031-9155/59/3/541] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
A factorized system matrix utilizing an image domain resolution model is attractive in fully 3D time-of-flight PET image reconstruction using list-mode data. In this paper, we study a factored model based on sparse matrix factorization that is comprised primarily of a simplified geometrical projection matrix and an image blurring matrix. Beside the commonly-used Siddon's ray-tracer, we propose another more simplified geometrical projector based on the Bresenham's ray-tracer which further reduces the computational cost. We discuss in general how to obtain an image blurring matrix associated with a geometrical projector, and provide theoretical analysis that can be used to inspect the efficiency in model factorization. In simulation studies, we investigate the performance of the proposed sparse factorization model in terms of spatial resolution, noise properties and computational cost. The quantitative results reveal that the factorization model can be as efficient as a non-factored model, while its computational cost can be much lower. In addition we conduct Monte Carlo simulations to identify the conditions under which the image resolution model can become more efficient in terms of image contrast recovery. We verify our observations using the provided theoretical analysis. The result offers a general guide to achieve the optimal reconstruction performance based on a sparse factorization model with an image domain resolution model.
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Affiliation(s)
- Jian Zhou
- Department of Biomedical Engineering, University of California, Davis, CA 95616, USA
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38
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Abstract
The resolution of positron emission tomography (PET) images is limited by the physics of positron-electron annihilation and instrumentation for photon coincidence detection. Model-based methods that incorporate accurate physical and statistical models have produced significant improvements in reconstructed image quality when compared with filtered backprojection reconstruction methods. However, it has often been suggested that by incorporating anatomical information, the resolution and noise properties of PET images could be further improved, leading to better quantitation or lesion detection. With the recent development of combined MR-PET scanners, we can now collect intrinsically coregistered magnetic resonance images. It is therefore possible to routinely make use of anatomical information in PET reconstruction, provided appropriate methods are available. In this article, we review research efforts over the past 20 years to develop these methods. We discuss approaches based on the use of both Markov random field priors and joint information or entropy measures. The general framework for these methods is described, and their performance and longer-term potential and limitations are discussed.
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Affiliation(s)
- Bing Bai
- Department of Radiology, University of Southern California, Los Angeles, CA, USA.
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39
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Mathews AJ, Komarov S, Wu H, O'Sullivan JA, Tai YC. Improving PET imaging for breast cancer using virtual pinhole PET half-ring insert. Phys Med Biol 2013; 58:6407-27. [PMID: 23999026 DOI: 10.1088/0031-9155/58/18/6407] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
A PET insert with detector having smaller crystals and placed near a region of interest in a conventional PET scanner can improve image resolution locally due to the virtual-pinhole PET (VP-PET) effect. This improvement is from the higher spatial sampling of the imaging area near the detector. We have built a prototype half-ring PET insert for head-and-neck cancer imaging applications. In this paper, we extend the use of the insert to breast imaging and show that such a system provides high resolution images of breast and axillary lymph nodes while maintaining the full imaging field of view capability of a clinical PET scanner. We characterize the resolution and contrast recovery for tumors across the imaging field of view. First, we model the system using Monte Carlo methods to determine its theoretical limit of improvement. Simulations were conducted with hot spherical tumors embedded in background activity at tumor-to-background contrast ranging from 3:1 to 12:1. Tumors are arranged in a Derenzo-like pattern with their diameters ranging from 2 to 12 mm. Experimental studies were performed using a chest phantom with cylindrical breast attachment. Tumors of different sizes arranged in a Derenzo-like pattern with tumor-to-background ratio of 6:1 are inserted into the breast phantom. Imaging capability of mediastinum and axillary lymph nodes is explored. Both Monte Carlo simulations and experiment show clear improvement in image resolution and contrast recovery with VP-PET half-ring insert. The degree of improvement in resolution and contrast recovery depends on location of the tumor. The full field of view imaging capability is shown to be maintained. Minor artifacts are introduced in certain regions.
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Affiliation(s)
- Aswin John Mathews
- Department of Electrical and Systems Engineering, Washington University in St Louis, MO 63130, USA.
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Rahmim A, Qi J, Sossi V. Resolution modeling in PET imaging: theory, practice, benefits, and pitfalls. Med Phys 2013; 40:064301. [PMID: 23718620 PMCID: PMC3663852 DOI: 10.1118/1.4800806] [Citation(s) in RCA: 217] [Impact Index Per Article: 18.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2012] [Revised: 02/22/2013] [Accepted: 03/26/2013] [Indexed: 01/11/2023] Open
Abstract
In this paper, the authors review the field of resolution modeling in positron emission tomography (PET) image reconstruction, also referred to as point-spread-function modeling. The review includes theoretical analysis of the resolution modeling framework as well as an overview of various approaches in the literature. It also discusses potential advantages gained via this approach, as discussed with reference to various metrics and tasks, including lesion detection observer studies. Furthermore, attention is paid to issues arising from this approach including the pervasive problem of edge artifacts, as well as explanation and potential remedies for this phenomenon. Furthermore, the authors emphasize limitations encountered in the context of quantitative PET imaging, wherein increased intervoxel correlations due to resolution modeling can lead to significant loss of precision (reproducibility) for small regions of interest, which can be a considerable pitfall depending on the task of interest.
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Affiliation(s)
- Arman Rahmim
- Department of Radiology, Johns Hopkins University, Baltimore, Maryland 21287, USA.
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41
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Cui J, Pratx G, Meng B, Levin CS. Distributed MLEM: an iterative tomographic image reconstruction algorithm for distributed memory architectures. IEEE TRANSACTIONS ON MEDICAL IMAGING 2013; 32:957-967. [PMID: 23529079 DOI: 10.1109/tmi.2013.2252913] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
The processing speed for positron emission tomography (PET) image reconstruction has been greatly improved in recent years by simply dividing the workload to multiple processors of a graphics processing unit (GPU). However, if this strategy is generalized to a multi-GPU cluster, the processing speed does not improve linearly with the number of GPUs. This is because large data transfer is required between the GPUs after each iteration, effectively reducing the parallelism. This paper proposes a novel approach to reformulate the maximum likelihood expectation maximization (MLEM) algorithm so that it can scale up to many GPU nodes with less frequent inter-node communication. While being mathematically different, the new algorithm maximizes the same convex likelihood function as MLEM, thus converges to the same solution. Experiments on a multi-GPU cluster demonstrate the effectiveness of the proposed approach.
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Affiliation(s)
- Jingyu Cui
- Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA.
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42
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Seidel J, Xi W, Kakareka JW, Pohida TJ, Jagoda EM, Green MV, Choyke PL. Performance characteristics of a positron projection imager for mouse whole-body imaging. Nucl Med Biol 2013; 40:321-30. [PMID: 23402672 PMCID: PMC3596450 DOI: 10.1016/j.nucmedbio.2012.12.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2012] [Revised: 10/25/2012] [Accepted: 12/01/2012] [Indexed: 10/27/2022]
Abstract
INTRODUCTION We describe a prototype positron projection imager (PPI) for visualizing the whole-body biodistribution of positron-emitting compounds in mouse-size animals. The final version of the PPI will be integrated into the MONICA portable dual-gamma camera system to allow the user to interchangeably image either single photon or positron-emitting compounds in a shared software and hardware environment. METHODS A mouse is placed in the mid-plane between two identical, opposed, pixelated LYSO arrays separated by 21.8-cm and in time coincidence. An image of the distribution of positron decays in the animal is formed on this mid-plane by coincidence events that fall within a small cone angle perpendicular to the two detectors and within a user-specified energy window. We measured the imaging performance of this device with phantoms and in tests performed in mice injected with various compounds labeled with positron-emitting isotopes. RESULTS Representative performance measurements yielded the following results (energy window 250-650keV, cone angle 3.5°): resolution in the image mid-plane, 1.66-mm (FWHM), resolution ±1.5-cm above and below the image plane, 2.2-mm (FWHM), sensitivity: 0.237-cps/kBq (8.76-cps/μCi) (18)F (0.024% absolute). Energy resolution was 15.9% with a linear-count-rate operating range of 0-14.8MBq (0-400μCi) and a corrected sensitivity variation across the field-of-view of <3%. Whole-body distributions of [(18)F] FDG and [(18)F] fluoride were well visualized in mice of typical size. CONCLUSION Performance measurements and field studies indicate that the PPI is well suited to whole-body positron projection imaging of mice. When integrated into the MONICA gamma camera system, the PPI may be particularly useful early in the drug development cycle where, like MONICA, basic whole-body biodistribution data can direct future development of the agent under study and where logistical factors (e.g., available imaging space, non-portability, and cost) may be limitations.
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Affiliation(s)
- Jurgen Seidel
- Molecular Imaging Program, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD
- Contractor to SAIC-Frederick, Frederick, MD
| | - Wenze Xi
- Molecular Imaging Program, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD
- Science Applications International Corporation (SAIC)-Frederick, Frederick, MD
| | - John W. Kakareka
- Signal Processing and Instrumentation Section, Division of Computational Bioscience, Center for Information Technology, National Institutes of Health, Bethesda, MD
| | - Thomas J. Pohida
- Signal Processing and Instrumentation Section, Division of Computational Bioscience, Center for Information Technology, National Institutes of Health, Bethesda, MD
| | - Elaine M. Jagoda
- Molecular Imaging Program, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD
| | - Michael V. Green
- Molecular Imaging Program, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD
- Contractor to SAIC-Frederick, Frederick, MD
| | - Peter L. Choyke
- Molecular Imaging Program, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD
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Kadrmas DJ, Oktay MB, Casey ME, Hamill JJ. Effect of Scan Time on Oncologic Lesion Detection in Whole-Body PET. IEEE TRANSACTIONS ON NUCLEAR SCIENCE 2012; 59:1940-1947. [PMID: 23293380 PMCID: PMC3535285 DOI: 10.1109/tns.2012.2197414] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Lesion-detection performance in oncologic PET depends in part upon count statistics, with shorter scans having higher noise and reduced lesion detectability. However, advanced techniques such as time-of-flight (TOF) and point spread function (PSF) modeling can improve lesion detection. This work investigates the relationship between reducing count levels (as a surrogate for scan time) and reconstructing with PSF model and TOF. A series of twenty-four whole-body phantom scans was acquired on a Biograph mCT TOF PET/CT scanner using the experimental methodology prescribed for the Utah PET Lesion Detection Database. Six scans were acquired each day over four days, with up to 23 (68)Ge shell-less lesions (diam. 6, 8, 10, 12, 16 mm) distributed throughout the phantom thorax and pelvis. Each scan acquired 6 bed positions at 240 s/bed in listmode format. The listmode files were then statistically pruned, preserving Poisson statistics, to equivalent count levels for scan times of 180 s, 120 s, 90 s, 60 s, 45 s, 30 s, and 15 s per bed field-of-view, corresponding to whole-body scan times of 1.5-24 min. Each dataset was reconstructed using ordinary Poisson line-of-response (LOR) OSEM, with PSF model, with TOF, and with PSF+TOF. Localization receiver operating characteristics (LROC) analysis was then performed using the channelized non-prewhitened (CNPW) observer. The results were analyzed to delineate the relationship between scan time, reconstruction method, and strength of post-reconstruction filter. Lesion-detection performance degraded as scan time was reduced, and progressively stronger filters were required to maximize performance for the shorter scans. PSF modeling and TOF were found to improve detection performance, but the degree of improvement for TOF was much larger than for PSF for the large phantom used in this study. Notably, the images using TOF provided equivalent lesion-detection performance to the images without TOF for scan durations 40% shorter, suggesting that TOF may offset, at least in part, the need for longer scan times in larger patients.
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Affiliation(s)
- Dan J. Kadrmas
- Utah Center for Advanced Imaging Research (UCAIR), Department of Radiology, University of Utah, Salt Lake City, UT 84108-1218 USA
| | - M. Bugrahan Oktay
- Utah Center for Advanced Imaging Research (UCAIR), Department of Radiology, University of Utah, Salt Lake City, UT 84108-1218 USA
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44
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Tashima H, Yamaya T, Yoshida E, Kinouchi S, Watanabe M, Tanaka E. A single-ring OpenPET enabling PET imaging during radiotherapy. Phys Med Biol 2012; 57:4705-18. [DOI: 10.1088/0031-9155/57/14/4705] [Citation(s) in RCA: 79] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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45
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Caucci L, Barrett HH. Objective assessment of image quality. V. Photon-counting detectors and list-mode data. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2012; 29:1003-1016. [PMID: 22673432 PMCID: PMC3377176 DOI: 10.1364/josaa.29.001003] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
A theoretical framework for detection or discrimination tasks with list-mode data is developed. The object and imaging system are rigorously modeled via three random mechanisms: randomness of the object being imaged, randomness in the attribute vectors, and, finally, randomness in the attribute vector estimates due to noise in the detector outputs. By considering the list-mode data themselves, the theory developed in this paper yields a manageable expression for the likelihood of the list-mode data given the object being imaged. This, in turn, leads to an expression for the optimal Bayesian discriminant. Figures of merit for detection tasks via the ideal and optimal linear observers are derived. A concrete example discusses detection performance of the optimal linear observer for the case of a known signal buried in a random lumpy background.
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Affiliation(s)
- Luca Caucci
- College of Optical Sciences and Department of Radiology, University of Arizona, Tucson, Arizona 85724, USA.
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46
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Keesing DB, Mathews A, Komarov S, Wu H, Song TY, O'Sullivan JA, Tai YC. Image reconstruction and system modeling techniques for virtual-pinhole PET insert systems. Phys Med Biol 2012; 57:2517-38. [PMID: 22490983 DOI: 10.1088/0031-9155/57/9/2517] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Virtual-pinhole PET (VP-PET) imaging is a new technology in which one or more high-resolution detector modules are integrated into a conventional PET scanner with lower resolution detectors. It can locally enhance the spatial resolution and contrast recovery near the add-on detectors, and depending on the configuration, may also increase the sensitivity of the system. This novel scanner geometry makes the reconstruction problem more challenging compared to the reconstruction of data from a stand-alone PET scanner, as new techniques are needed to model and account for the non-standard acquisition. In this paper, we present a general framework for fully 3D modeling of an arbitrary VP-PET insert system. The model components are incorporated into a statistical reconstruction algorithm to estimate an image from the multi-resolution data. For validation, we apply the proposed model and reconstruction approach to one of our custom-built VP-PET systems-a half-ring insert device integrated into a clinical PET/CT scanner. Details regarding the most important implementation issues are provided. We show that the proposed data model is consistent with the measured data, and that our approach can lead to reconstructions with improved spatial resolution and lesion detectability.
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Affiliation(s)
- Daniel B Keesing
- Department of Biomedical Engineering, Washington University in St Louis, St Louis, MO 63130, USA
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47
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Zhou J, Qi J. Fast and efficient fully 3D PET image reconstruction using sparse system matrix factorization with GPU acceleration. Phys Med Biol 2012; 56:6739-57. [PMID: 21970864 DOI: 10.1088/0031-9155/56/20/015] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Statistically based iterative image reconstruction has been widely used in positron emission tomography (PET) imaging. The quality of reconstructed images depends on the accuracy of the system matrix that defines the mapping from the image space to the data space. However, an accurate system matrix is often associated with high computation cost and huge storage requirement. In this paper, we present a method to address this problem using sparse matrix factorization and graphics processor unit (GPU) acceleration. We factor the accurate system matrix into three highly sparse matrices: a sinogram blurring matrix, a geometric projection matrix and an image blurring matrix. The geometrical projection matrix is precomputed based on a simple line integral model, while the sinogram and image blurring matrices are estimated from point-source measurements. The resulting factored system matrix has far less nonzero elements than the original system matrix, which substantially reduces the storage and computation cost. The smaller matrix size also allows an efficient implementation of the forward and backward projectors on a GPU, which often has a limited memory space. Our experimental studies show that the proposed method can dramatically reduce the computation cost of high-resolution iterative image reconstruction, while achieving better performance than existing factorization methods.
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Affiliation(s)
- Jian Zhou
- Department of Biomedical Engineering, University of California, Davis, CA 95616, USA.
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48
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Cui JY, Pratx G, Prevrhal S, Levin CS. Fully 3D list-mode time-of-flight PET image reconstruction on GPUs using CUDA. Med Phys 2011; 38:6775-86. [DOI: 10.1118/1.3661998] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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49
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Qi J, Yang Y, Zhou J, Wu Y, Cherry SR. Experimental assessment of resolution improvement of a zoom-in PET. Phys Med Biol 2011; 56:N165-74. [DOI: 10.1088/0031-9155/56/17/n01] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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50
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Scheins JJ, Herzog H, Shah NJ. Fully-3D PET image reconstruction using scanner-independent, adaptive projection data and highly rotation-symmetric voxel assemblies. IEEE TRANSACTIONS ON MEDICAL IMAGING 2011; 30:879-892. [PMID: 21292592 DOI: 10.1109/tmi.2011.2109732] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
For iterative, fully 3D positron emission tomography (PET) image reconstruction intrinsic symmetries can be used to significantly reduce the size of the system matrix. The precalculation and beneficial memory-resident storage of all nonzero system matrix elements is possible where sufficient compression exists. Thus, reconstruction times can be minimized independently of the used projector and more elaborate weighting schemes, e.g., volume-of-intersection (VOI), are applicable. A novel organization of scanner-independent, adaptive 3D projection data is presented which can be advantageously combined with highly rotation-symmetric voxel assemblies. In this way, significant system matrix compression is achieved. Applications taking into account all physical lines-of-response (LORs) with individual VOI projectors are presented for the Siemens ECAT HR+ whole-body scanner and the Siemens BrainPET, the PET component of a novel hybrid-MR/PET imaging system. Measured and simulated data were reconstructed using the new method with ordered-subset-expectation-maximization (OSEM). Results are compared to those obtained by the sinogram-based OSEM reconstruction provided by the manufacturer. The higher computational effort due to the more accurate image space sampling provides significantly improved images in terms of resolution and noise.
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Affiliation(s)
- J J Scheins
- Institute of Neuroscience and Medicine, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany.
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