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Prediction of O-6-methylguanine-DNA methyltransferase and overall survival of the patients suffering from glioblastoma using MRI-based hybrid radiomics signatures in machine and deep learning framework. Neural Comput Appl 2023. [DOI: 10.1007/s00521-023-08405-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2023]
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2
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Duangburong S, Phruksaphanrat B, Muengtaweepongsa S. Comparison of ANN and ANFIS Models for AF Diagnosis Using RR Irregularities. APPLIED SCIENCES 2023; 13:1712. [DOI: 10.3390/app13031712] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/03/2023]
Abstract
Classification of normal sinus rhythm (NSR), paroxysmal atrial fibrillation (PAF), and persistent atrial fibrillation (AF) is crucial in order to diagnose and effectively plan treatment for patients. Current classification models were primarily developed by electrocardiogram (ECG) signal databases, which may be unsuitable for local patients. Therefore, this research collected ECG signals from 60 local Thai patients (age 52.53 ± 23.92) to create a classification model. The coefficient of variance (CV), the median absolute deviation (MAD), and the root mean square of the successive differences (RMSSD) are ordinary feature variables of RR irregularities used by existing models. The square of average variation (SAV) is a newly proposed feature that extracts from the irregularity of RR intervals. All variables were found to be statistically different using ANOVA tests and Tukey’s method with a p-value less than 0.05. The methods of artificial neural network (ANN) and adaptive neuro-fuzzy inference system (ANFIS) were also tested and compared to find the best classification model. Finally, SAV showed the best performance using the ANFIS model with trapezoidal membership function, having the highest system accuracy (ACC) at 89.33%, sensitivity (SE), specificity (SP), and positive predictivity (PPR) for NSR at 100.00%, 94.00%, and 89.29%, PAF at 88.00%, 90.57%, and 81.48%, and AF at 80.00%, 96.00%, and 90.91%, respectively.
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Affiliation(s)
- Suttirak Duangburong
- Research Unit in Industrial Statistics and Operational Research, Industrial Engineering Department, Faculty of Engineering, Thammasat School of Engineering, Thammasat University, Pathum Thani 12121, Thailand
| | - Busaba Phruksaphanrat
- Research Unit in Industrial Statistics and Operational Research, Industrial Engineering Department, Faculty of Engineering, Thammasat School of Engineering, Thammasat University, Pathum Thani 12121, Thailand
| | - Sombat Muengtaweepongsa
- Center of Excellence in Stroke, Faculty of Medicine, Thammasat University, Pathum Thani 10121, Thailand
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Jiang M, Gu J, Li Y, Wei B, Zhang J, Wang Z, Xia L. HADLN: Hybrid Attention-Based Deep Learning Network for Automated Arrhythmia Classification. Front Physiol 2021; 12:683025. [PMID: 34290619 PMCID: PMC8289344 DOI: 10.3389/fphys.2021.683025] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2021] [Accepted: 05/27/2021] [Indexed: 11/13/2022] Open
Abstract
In recent years, with the development of artificial intelligence, deep learning model has achieved initial success in ECG data analysis, especially the detection of atrial fibrillation. In order to solve the problems of ignoring the correlation between contexts and gradient dispersion in traditional deep convolution neural network model, the hybrid attention-based deep learning network (HADLN) method is proposed to implement arrhythmia classification. The HADLN can make full use of the advantages of residual network (ResNet) and bidirectional long–short-term memory (Bi-LSTM) architecture to obtain fusion features containing local and global information and improve the interpretability of the model through the attention mechanism. The method is trained and verified by using the PhysioNet 2017 challenge dataset. Without loss of generality, the ECG signal is classified into four categories, including atrial fibrillation, noise, other, and normal signals. By combining the fusion features and the attention mechanism, the learned model has a great improvement in classification performance and certain interpretability. The experimental results show that the proposed HADLN method can achieve precision of 0.866, recall of 0.859, accuracy of 0.867, and F1-score of 0.880 on 10-fold cross-validation.
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Affiliation(s)
- Mingfeng Jiang
- School of Information Science and Technology, Zhejiang Sci-Tech University, Hangzhou, China
| | - Jiayan Gu
- School of Information Science and Technology, Zhejiang Sci-Tech University, Hangzhou, China
| | - Yang Li
- School of Information Science and Technology, Zhejiang Sci-Tech University, Hangzhou, China
| | - Bo Wei
- School of Information Science and Technology, Zhejiang Sci-Tech University, Hangzhou, China
| | - Jucheng Zhang
- Department of Clinical Engineering, The Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China
| | - Zhikang Wang
- Department of Clinical Engineering, The Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, China
| | - Ling Xia
- Department of Biomedical Engineering, Zhejiang University, Hangzhou, China
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Automatic Classification System of Arrhythmias Using 12-Lead ECGs with a Deep Neural Network Based on an Attention Mechanism. Symmetry (Basel) 2020. [DOI: 10.3390/sym12111827] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Nowadays, a series of social problems caused by cardiovascular diseases are becoming increasingly serious. Accurate and efficient classification of arrhythmias according to an electrocardiogram is of positive significance for improving the health status of people all over the world. In this paper, a new neural network structure based on the most common 12-lead electrocardiograms was proposed to realize the classification of nine arrhythmias, which consists of Inception and GRU (Gated Recurrent Units) primarily. Moreover, a new attention mechanism is added to the model, which makes sense for data symmetry. The average F1 score obtained from three different test sets was over 0.886 and the highest was 0.919. The accuracy, sensitivity, and specificity obtained from the PhysioNet public database were 0.928, 0.901, and 0.984, respectively. As a whole, this deep neural network performed well in the multi-label classification of 12-lead ECG signals and showed better stability than other methods in the case of more test samples.
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Wavelet Scattering Transform for ECG Beat Classification. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2020; 2020:3215681. [PMID: 33133225 PMCID: PMC7568798 DOI: 10.1155/2020/3215681] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/06/2020] [Revised: 08/09/2020] [Accepted: 09/20/2020] [Indexed: 01/14/2023]
Abstract
An electrocardiogram (ECG) records the electrical activity of the heart; it contains rich pathological information on cardiovascular diseases, such as arrhythmia. However, it is difficult to visually analyze ECG signals due to their complexity and nonlinearity. The wavelet scattering transform can generate translation-invariant and deformation-stable representations of ECG signals through cascades of wavelet convolutions with nonlinear modulus and averaging operators. We proposed a novel approach using wavelet scattering transform to automatically classify four categories of arrhythmia ECG heartbeats, namely, nonectopic (N), supraventricular ectopic (S), ventricular ectopic (V), and fusion (F) beats. In this study, the wavelet scattering transform extracted 8 time windows from each ECG heartbeat. Two dimensionality reduction methods, principal component analysis (PCA) and time window selection, were applied on the 8 time windows. These processed features were fed to the neural network (NN), probabilistic neural network (PNN), and k-nearest neighbour (KNN) classifiers for classification. The 4th time window in combination with KNN (k = 4) has achieved the optimal performance with an averaged accuracy, positive predictive value, sensitivity, and specificity of 99.3%, 99.6%, 99.5%, and 98.8%, respectively, using tenfold cross-validation. Thus, our proposed model is capable of highly accurate arrhythmia classification and will provide assistance to physicians in ECG interpretation.
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Ji Y, Zhang S, Xiao W. Electrocardiogram Classification Based on Faster Regions with Convolutional Neural Network. SENSORS (BASEL, SWITZERLAND) 2019; 19:E2558. [PMID: 31195603 PMCID: PMC6603727 DOI: 10.3390/s19112558] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/31/2019] [Revised: 05/19/2019] [Accepted: 05/22/2019] [Indexed: 01/27/2023]
Abstract
The classification of electrocardiograms (ECG) plays an important role in the clinical diagnosis of heart disease. This paper proposes an effective system development and implementation for ECG classification based on faster regions with a convolutional neural network (Faster R-CNN) algorithm. The original one-dimensional ECG signals contain the preprocessed patient ECG signals and some ECG recordings from the MIT-BIH database in this experiment. Each ECG beat of one-dimensional ECG signals was transformed into a two-dimensional image for experimental training sets and test sets. As a result, we classified the ECG beats into five categories with an average accuracy of 99.21%. In addition, we did a comparative experiment using the one versus rest support vector machine (OVR SVM) algorithm, and the classification accuracy of the proposed Faster R-CNN was shown to be 2.59% higher.
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Affiliation(s)
- Yinsheng Ji
- School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing 100083, China.
- Key Laboratory of Knowledge Automation for Industrial Processes of Ministry of Education, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing 100083, China.
| | - Sen Zhang
- School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing 100083, China.
- Key Laboratory of Knowledge Automation for Industrial Processes of Ministry of Education, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing 100083, China.
| | - Wendong Xiao
- School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing 100083, China.
- Key Laboratory of Knowledge Automation for Industrial Processes of Ministry of Education, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing 100083, China.
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Ashtiyani M, Navaei Lavasani S, Asgharzadeh Alvar A, Deevband MR. Heart Rate Variability Classification using Support Vector Machine and Genetic Algorithm. J Biomed Phys Eng 2018; 8:423-434. [PMID: 30568932 PMCID: PMC6280110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2016] [Accepted: 11/20/2016] [Indexed: 06/09/2023]
Abstract
BACKGROUND Electrocardiogram (ECG) is defined as an electrical signal, which represents cardiac activity. Heart rate variability (HRV) as the variation of interval between two consecutive heartbeats represents the balance between the sympathetic and parasympathetic branches of the autonomic nervous system. OBJECTIVE In this study, we aimed to evaluate the efficiency of discrete wavelet transform (DWT) based features extracted from HRV which were further selected by genetic algorithm (GA), and were deployed by support vector machine to HRV classification. MATERIALS AND METHODS In this paper, 53 ECGs including 3 different beat types (ventricular fibrillation (VF), atrial fibrillation (AF) and also normal sinus rhythm (NSR)), were selected from the MIT/BIH arrhythmia database. The approach contains 4 stages including HRV signal extraction from each ECG signal, feature extraction using DWT (entropy, mean, variance, kurtosis and spectral component β), best features selection by GA and classification of normal and abnormal ECGs using the selected features by support vector machine (SVM). RESULTS The performance of the classification procedure employing the combination of selected features were evaluated using several measures including accuracy, sensitivity, specificity and precision which resulted in 97.14%, 97.54%, 96.9% and 97.64%, respectively. CONCLUSION A comparative analysis with the related existing methods illustrates the proposed method has a higher potential in the classification of AF and VF. The attempt to classify the ECG signal has been successfully achieved. The proposed method has shown a promising sensitivity of 97.54% which indicates that this technique is an excellent model for computer-aided diagnosis of cardiac arrhythmias.
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Affiliation(s)
- M Ashtiyani
- Department of Biomedical Engineering and Medical Physics, Faculty of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - S Navaei Lavasani
- Department of Biomedical Engineering and Medical Physics, Faculty of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - A Asgharzadeh Alvar
- Department of Biomedical Engineering and Medical Physics, Faculty of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
| | - M R Deevband
- Department of Biomedical Engineering and Medical Physics, Faculty of Medicine, Shahid Beheshti University of Medical Sciences, Tehran, Iran
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Lim HW, Hau YW, Lim CW, Othman MA. Artificial intelligence classification methods of atrial fibrillation with implementation technology. Comput Assist Surg (Abingdon) 2016. [DOI: 10.1080/24699322.2016.1240303] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
Affiliation(s)
- Huey Woan Lim
- IJN-UTM Cardiovascular Engineering Centre, Faculty of Biosciences and Medical Engineering, Universiti Teknologi Malaysia, Skudai, Johor, Malaysia
| | - Yuan Wen Hau
- IJN-UTM Cardiovascular Engineering Centre, Faculty of Biosciences and Medical Engineering, Universiti Teknologi Malaysia, Skudai, Johor, Malaysia
| | - Chiao Wen Lim
- Faculty of Medicine, Universiti Teknologi MARA, Sungai Buloh, Selangor, Malaysia
| | - Mohd Afzan Othman
- Department of Electronics and Computer Engineering, Faculty of Electrical Engineering, Universiti Teknologi Malaysia, Skudai, Johor, Malaysia
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Khalaf AF, Owis MI, Yassine IA. Image features of spectral correlation function for arrhythmia classification. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2016; 2015:5199-202. [PMID: 26737463 DOI: 10.1109/embc.2015.7319563] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Recently, computerized arrhythmia classification tools have been intensively used to aid physicians to recognize different irregular heartbeats. In this paper, we introduce arrhythmia CAD system exploiting cyclostationary signal analysis through estimation of the spectral correlation function for 5 different beat types. Two experiments were performed. Raw spectral correlation data were used as features in the first experiment while the other experiment which dealt with the spectral correlation coefficients as image included extraction of wavelet and shape features followed by fisher score for dimensionality reduction. As for the classification task, Support Vector Machine (SVM) with linear kernel was used for both experiments. The experimental results showed that both proposed approaches are superior compared to several state of the art methods. This approach achieved sensitivity, specificity, accuracy, positive predictive value (PPV) and negative predictive value (NPV) of 99.20%, 99.70%, 98.60%, 99.90% and 97.60% respectively.
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