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Deng J, Xie X. 3D Interactive Segmentation With Semi-Implicit Representation and Active Learning. IEEE Trans Image Process 2021; 30:9402-9417. [PMID: 34757907 DOI: 10.1109/tip.2021.3125491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Segmenting complex 3D geometry is a challenging task due to rich structural details and complex appearance variations of target object. Shape representation and foreground-background delineation are two of the core components of segmentation. Explicit shape models, such as mesh based representations, suffer from poor handling of topological changes. On the other hand, implicit shape models, such as level-set based representations, have limited capacity for interactive manipulation. Fully automatic segmentation for separating foreground objects from background generally utilizes non-interoperable machine learning methods, which heavily rely on the off-line training dataset and are limited to the discrimination power of the chosen model. To address these issues, we propose a novel semi-implicit representation method, namely Non-Uniform Implicit B-spline Surface (NU-IBS), which adaptively distributes parametrically blended patches according to geometrical complexity. Then, a two-stage cascade classifier is introduced to carry out efficient foreground and background delineation, where a simplistic Naïve-Bayesian model is trained for fast background elimination, followed by a stronger pseudo-3D Convolutional Neural Network (CNN) multi-scale classifier to precisely identify the foreground objects. A localized interactive and adaptive segmentation scheme is incorporated to boost the delineation accuracy by utilizing the information iteratively gained from user intervention. The segmentation result is obtained via deforming an NU-IBS according to the probabilistic interpretation of delineated regions, which also imposes a homogeneity constrain for individual segments. The proposed method is evaluated on a 3D cardiovascular Computed Tomography Angiography (CTA) image dataset and Brain Tumor Image Segmentation Benchmark 2015 (BraTS2015) 3D Magnetic Resonance Imaging (MRI) dataset.
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Glinskii OV, Huxley VH, Xie L, Bunyak F, Palaniappan K, Glinsky VV. Complex Non-sinus-associated Pachymeningeal Lymphatic Structures: Interrelationship With Blood Microvasculature. Front Physiol 2019; 10:1364. [PMID: 31736785 PMCID: PMC6834776 DOI: 10.3389/fphys.2019.01364] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2018] [Accepted: 10/14/2019] [Indexed: 01/13/2023] Open
Abstract
The contribution of cranial dura mater vascular networks, as means for maintaining brain fluid movement and balance, and as the source of significant initiators and/or contributors to neurological disorders, has been overlooked. These networks consist of both blood and lymphatic vessels. The latter were discovered recently and described as sinus-associated structures thus changing the old paradigm that central nervous system lacks lymphatics. In this study, using markers specific to blood and lymphatic endothelia, we demonstrate the existence of the complex non-sinus-associated pachymeningeal lymphatic vasculature. We further show the interrelationship and possible connections between lymphatic vessels and the dural blood circulatory system. Our novel findings reveal the presence of lymphatic-like structures that exist on their own and/or in close proximity to microvessels. Of particular interest are sub-sets of vascular complexes with dual (lymphatic and blood) vessel identity representing a unique microenvironment within the cranial dura. The close association of the systemic blood circulation and meningeal lymphatics achieved in these complexes could facilitate fluid exchange between the two compartments and constitute an alternative route for CSF drainage.
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Affiliation(s)
- Olga V Glinskii
- Department of Medical Pharmacology and Physiology, University of Missouri, Columbia, MO, United States.,Dalton Cardiovascular Research Center, University of Missouri, Columbia, MO, United States.,Reasearch Service, Harry S. Truman Memorial Veterans Hospital, Columbia, MO, United States.,Center for Gender Physiology and Environmental Adaptation, University of Missouri, Columbia, MO, United States
| | - Virginia H Huxley
- Department of Medical Pharmacology and Physiology, University of Missouri, Columbia, MO, United States.,Dalton Cardiovascular Research Center, University of Missouri, Columbia, MO, United States.,Center for Gender Physiology and Environmental Adaptation, University of Missouri, Columbia, MO, United States
| | - Leike Xie
- Dalton Cardiovascular Research Center, University of Missouri, Columbia, MO, United States
| | - Filiz Bunyak
- Computational Imaging and VisAnalysis Lab, Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, United States
| | - Kannappan Palaniappan
- Computational Imaging and VisAnalysis Lab, Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, United States
| | - Vladislav V Glinsky
- Dalton Cardiovascular Research Center, University of Missouri, Columbia, MO, United States.,Reasearch Service, Harry S. Truman Memorial Veterans Hospital, Columbia, MO, United States.,Center for Gender Physiology and Environmental Adaptation, University of Missouri, Columbia, MO, United States.,Department of Pathology and Anatomical Sciences, University of Missouri, Columbia, MO, United States
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Glinskii OV, Huxley VH, Glinsky VV. Estrogen-Dependent Changes in Dura Mater Microvasculature Add New Insights to the Pathogenesis of Headache. Front Neurol 2017; 8:549. [PMID: 29093699 PMCID: PMC5651256 DOI: 10.3389/fneur.2017.00549] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Accepted: 09/28/2017] [Indexed: 12/17/2022] Open
Abstract
The pathogenesis of headaches is a matter of ongoing discussion of two major theories describing it either as a vascular phenomenon resulting from vasodilation or primarily as a neurogenic process accompanied by secondary vasodilation associated with sterile neurogenic inflammation. While summarizing current views on neurogenic and vascular origins of headache, this mini review adds new insights regarding how smooth muscle-free microvascular networks, discovered within dura mater connective tissue stroma (previously thought to be “avascular”), may become a site of initial insult generating the background for the development of headache. Deficiencies in estrogen-dependent control of microvascular integrity leading to plasma protein extravasation, potential activation of perivascular and connective tissue stroma nociceptive neurons, and triggering of inflammatory responses are described. Finally, possible avenues for controlling and preventing these pathophysiological changes are discussed.
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Affiliation(s)
- Olga V Glinskii
- Research Service, Harry S. Truman Memorial Veterans Hospital, Columbia, MO, United States.,Department of Medical Pharmacology and Physiology, University of Missouri, Columbia, MO, United States.,Center for Gender Physiology and Environmental Adaptation, University of Missouri, Columbia, MO, United States
| | - Virginia H Huxley
- Department of Medical Pharmacology and Physiology, University of Missouri, Columbia, MO, United States.,Center for Gender Physiology and Environmental Adaptation, University of Missouri, Columbia, MO, United States
| | - Vladislav V Glinsky
- Research Service, Harry S. Truman Memorial Veterans Hospital, Columbia, MO, United States.,Center for Gender Physiology and Environmental Adaptation, University of Missouri, Columbia, MO, United States.,Department of Pathology and Anatomical Sciences, University of Missouri, Columbia, MO, United States
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