Characterizing the Effects of MR Image Quality Metrics on Intrinsic Connectivity Brain Networks: A Multivariate Approach

Assessing MR-compatibility of somatosensory stimulation devices: A systematic review on testing methodologies

Functional magnetic resonance imaging (fMRI) has been extensively used as a tool to map the brain processes related to somatosensory stimulation. This mapping includes the localization of task-related brain activation and the characterization of brain activity dynamics and neural circuitries related to the processing of somatosensory information. However, the magnetic resonance (MR) environment presents unique challenges regarding participant and equipment safety and compatibility. This study aims to systematically review and analyze the state-of-the-art methodologies to assess the safety and compatibility of somatosensory stimulation devices in the MR environment. A literature search, following the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement guidelines, was performed in PubMed, Scopus, and Web of Science to find original research on the development and testing of devices for somatosensory stimulation in the MR environment. Nineteen records that complied with the inclusion and eligibility criteria were considered. The findings are discussed in the context of the existing international standards available for the safety and compatibility assessment of devices intended to be used in the MR environment. In sum, the results provided evidence for a lack of uniformity in the applied testing methodologies, as well as an in-depth presentation of the testing methodologies and results. Lastly, we suggest an assessment methodology (safety, compatibility, performance, and user acceptability) that can be applied to devices intended to be used in the MR environment.

Systematic review registration

https://www.crd.york.ac.uk/prospero/, identifier CRD42021257838.

The Influence of Spatial Smoothing Kernel Size on the Whole-brain Dynamic Functional Network Connectivity and Meta-state Parameters

In functional magnetic resonance imaging (fMRI), spatial smoothing procedure is generally a stable step in the preprocessing stream. Previous research (including ours) suggested dependency of the static functional connectivity on the size of the spatial smoothing kernel size. But its impact on the time-varying patterns of functional connectivity has not been investigated. Here, we sought to identify the effects of spatial smoothing on brain dynamics by performing dynamic functional network connectivity (dFNC) and meta-state analysis, a unique approach capable of examining a higher-dimensional temporal dynamism of whole-brain functional connectivity. Gaussian smoothing kernel with different widths at half of the maximum of the height of the Gaussian (4, 8, and 12 mm FWHM) were used during preprocessing prior to the group independent component analysis (ICA) with a relatively high model order of 75. dFNC was conducted using the sliding-time window approach and k-means clustering algorithm. Meta-state dynamics method was performed by reducing the number of windowed FNC correlations using principal components analysis (PCA), temporal and spatial ICA and k-means. Results revealed robust effects of spatial smoothing on the connectivity dynamics of several network pairs including a variety of cognitive/attention networks in a connectivity state with the highest occurrence (FDR corrected-p < 0.01). Meta-state analyses indicated significant changes in meta-state metrics including the number of meta-states, meta-state changes, meta-state span, and the total distance. These changes were particularly pronounced when we compared resting state data smoothed with 8 vs. 12 mm FWHM. Our preliminary findings give insights into the effects of spatial smoothing kernel size on the dynamics of functional connectivity and its consequences on meta-state parameters. It also provides further indication of the importance of evaluating variance associated with preprocessing steps on analysis outcomes.

The Influence of Spatial Smoothing Kernel Size on the Temporal Features of Intrinsic Connectivity Networks

Spatial smoothing is a common preprocessing step in the analysis of functional magnetic resonance imaging (fMRI) data. However, little is known about the effect of spatial smoothing kernel size on the temporal properties of functional brain networks. This study presents a pilot investigation on the influence of spatial smoothing using independent component analysis (ICA) as a data-driven technique to extract functional networks of brain in the form of intrinsic connectivity networks (ICNs). BOLD resting state fMRI data were collected from 22 healthy subjects on a 3.0 T MRI scanner. 3D spatial smoothing was applied using a Gaussian filter with full width at half maximum (FWHM) kernel sizes of 4 mm, 8 mm, and 12 mm in the preprocessing step. Group ICA with the Infomax algorithm was performed at 75-IC decomposition. Network temporal features including functional network connectivity (FNC) and BOLD power spectra were calculated and compared pairwise using a paired t-test with a false discovery rate (FDR) correction for multiple comparisons. Results revealed robust effects of smoothing kernel size on FNC measures of most ICNs, largely indicating a decrease in inter-network connectivity as the smoothing kernel size decreased. Power spectra analysis showed increased high-frequency power (0.15 - 0.25 Hz) but decreased low-frequency power (0.01 - 0.10 Hz) with a decrease in the smoothing kernel size (corrected p< 0.01). These findings provide a preliminary observation on the effect of spatial smoothing kernel size on the FNC and power spectra.

An ICA Investigation into the Effect of Physiological Noise Correction on Dimensionality and Spatial Maps of Intrinsic Connectivity Networks

Physiological processes such as cardiac pulsations and respiration can induce signal modulations in functional magnetic resonance imaging (fMRI) time series, and confound inferences made about neural processing from analyses of the blood oxygenation level-dependent (BOLD) signals. Retrospective image space correction of physiological noise (RETROICOR) is a widely used approach to reduce physiological signals in data. Independent component analysis (ICA) is a valuable blind source separation method for analyzing brain networks, referred to as intrinsic connectivity networks (ICNs). Previously, we showed that temporal properties of the ICA-derived networks such as spectral power and functional network connectivity could be impacted by RETROICOR corrections. The goal of this study is to investigate the effect of retrospective correction of physiological artifacts on the ICA dimensionality (model order) and intensities of ICN spatial maps. To this aim, brain BOLD fMRI, heartbeat, and respiration were measured in 22 healthy subjects during resting state. ICA dimensionality was estimated using minimum description length (MDL) based on i.i.d. data samples and smoothness FWHM kernel, and entropy-rate based order selection by finite memory length model (ER-FM) and autoregressive model (ER-AR). Differences in spatial maps between the raw and denoised data were compared using the paired t-test and false discovery rate (FDR) thresholding was used to correct for multiple comparisons. Results showed that ICA dimensionality was greater in the raw data compared to the denoised data. Significant differences were found in the intensities of spatial maps for three ICNs: basal ganglia, precuneus, and frontal network. These preliminary results indicate that the retrospective physiological noise correction can induce change in the resting state spatial map intensity related to the within-network connectivity. More research is needed to understand this effect.

A naturalistic neuroimaging database for understanding the brain using ecological stimuli

Neuroimaging has advanced our understanding of human psychology using reductionist stimuli that often do not resemble information the brain naturally encounters. It has improved our understanding of the network organization of the brain mostly through analyses of 'resting-state' data for which the functions of networks cannot be verifiably labelled. We make a 'Naturalistic Neuroimaging Database' (NNDb v1.0) publically available to allow for a more complete understanding of the brain under more ecological conditions during which networks can be labelled. Eighty-six participants underwent behavioural testing and watched one of 10 full-length movies while functional magnetic resonance imaging was acquired. Resulting timeseries data are shown to be of high quality, with good signal-to-noise ratio, few outliers and low movement. Data-driven functional analyses provide further evidence of data quality. They also demonstrate accurate timeseries/movie alignment and how movie annotations might be used to label networks. The NNDb can be used to answer questions previously unaddressed with standard neuroimaging approaches, progressing our knowledge of how the brain works in the real world.

Impact of Intravesical Cold Sensation on Functional Network Connectivity Estimated Using ICA at Rest & During Interoceptive Task

Afferent nerves that carry interoceptive signals from the viscera to the brain include Aδ and C-fibers. Previously, we examined the effects of detrusor distention (conveyed mainly by Aδ fibers) on the static functional network connectivity (FNC) of the brain using independent component analysis (ICA) of fMRI time series. In the present study, we investigate the impact of intravesical cold sensation (thought to be conveyed by C-fibers) on brain FNC using similar ICA approach. Thirteen healthy women were scanned on a 3.0T MRI scanner during a resting state scan and an intravesical cold sensation task fMRI. High dimensional ICA (n = 75) were used to decompose the fMRI data into several intrinsic connectivity networks (ICNs) including the default-mode (DMN), subcortical (SCN; amygdala, thalamus), salience (SN), central executive (CEN), sensorimotor (SMN), and cerebellar/brainstem (CBN) networks. Results demonstrate significant FNC differences in several ICN pairs primarily between the SCN and cognitive networks such as CEN, as well as between SN and CBN and DMN when intravesical cold water condition was compared to rest (FDR-corrected p-value of 0.05). Significant increases in FNC between CBN and between SMN were also observed during interoceptive condition. The results indicate significant impact of Aδ and C-fiber-originated interoceptive signals on the brain connectivity when compared to the baseline rest.