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Lyu Y, Bennamoun M, Sharif N, Lip GYH, Dwivedi G. Artificial Intelligence in the Image-Guided Care of Atrial Fibrillation. Life (Basel) 2023; 13:1870. [PMID: 37763273 PMCID: PMC10532509 DOI: 10.3390/life13091870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2023] [Revised: 08/19/2023] [Accepted: 08/30/2023] [Indexed: 09/29/2023] Open
Abstract
Atrial fibrillation arises mainly due to abnormalities in the cardiac conduction system and is associated with anatomical remodeling of the atria and the pulmonary veins. Cardiovascular imaging techniques, such as echocardiography, computed tomography, and magnetic resonance imaging, are crucial in the management of atrial fibrillation, as they not only provide anatomical context to evaluate structural alterations but also help in determining treatment strategies. However, interpreting these images requires significant human expertise. The potential of artificial intelligence in analyzing these images has been repeatedly suggested due to its ability to automate the process with precision comparable to human experts. This review summarizes the benefits of artificial intelligence in enhancing the clinical care of patients with atrial fibrillation through cardiovascular image analysis. It provides a detailed overview of the two most critical steps in image-guided AF management, namely, segmentation and classification. For segmentation, the state-of-the-art artificial intelligence methodologies and the factors influencing the segmentation performance are discussed. For classification, the applications of artificial intelligence in the diagnosis and prognosis of atrial fibrillation are provided. Finally, this review also scrutinizes the current challenges hindering the clinical applicability of these methods, with the aim of guiding future research toward more effective integration into clinical practice.
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Affiliation(s)
- Yiheng Lyu
- Department of Computer Science and Software Engineering, School of Physics, Mathematics and Computing, The University of Western Australia, Perth, WA 6009, Australia; (Y.L.); (M.B.)
- Harry Perkins Institute of Medical Research, The University of Western Australia, Perth, WA 6009, Australia
| | - Mohammed Bennamoun
- Department of Computer Science and Software Engineering, School of Physics, Mathematics and Computing, The University of Western Australia, Perth, WA 6009, Australia; (Y.L.); (M.B.)
| | - Naeha Sharif
- Department of Computer Science and Software Engineering, School of Physics, Mathematics and Computing, The University of Western Australia, Perth, WA 6009, Australia; (Y.L.); (M.B.)
| | - Gregory Y. H. Lip
- Liverpool Centre for Cardiovascular Science, University of Liverpool, Liverpool L69 3BX, UK
- Liverpool John Moores University, Liverpool L3 5UX, UK
- Liverpool Heart and Chest Hospital, Liverpool L14 3PE, UK
- Danish Center for Health Services Research, Department of Clinical Medicine, Aalborg University, 9220 Aalborg, Denmark
| | - Girish Dwivedi
- Harry Perkins Institute of Medical Research, The University of Western Australia, Perth, WA 6009, Australia
- Department of Cardiology, Fiona Stanley Hospital, Perth, WA 6150, Australia
- Medical School, The University of Western Australia, Perth, WA 6009, Australia
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Du X, Liu Y. Constraint-based Unsupervised Domain Adaptation network for Multi-Modality Cardiac Image Segmentation. IEEE J Biomed Health Inform 2021; 26:67-78. [PMID: 34757915 DOI: 10.1109/jbhi.2021.3126874] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
The cardiac CT and MRI images depict the various structures of the heart, which are very valuable for analyzing heart function. However, due to the difference in the shape of the cardiac images and imaging techniques, automatic segmentation is challenging. To solve this challenge, in this paper, we propose a new constraint-based unsupervised domain adaptation network. This network first performs mutual translation of images between different domains, it can provide training data for the segmentation model, and ensure domain invariance at the image level. Then, we input the target domain into the source domain segmentation model to obtain pseudo-labels and introduce cross-domain self-supervised learning between the two segmentation models. Here, a new loss function is designed to ensure the accuracy of the pseudo-labels. In addition, a cross-domain consistency loss is also introduced. Finally, we construct a multi-level aggregation segmentation network to obtain more refined target domain information. We validate our method on the public whole heart image segmentation challenge dataset and obtain experimental results of 82.9% and 5.5 on dice and average symmetric surface distance (ASSD), respectively. These experimental results prove that our method can provide important assistance in the clinical evaluation of unannotated cardiac datasets.
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3
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Wu Y, Tang Z, Li B, Firmin D, Yang G. Recent Advances in Fibrosis and Scar Segmentation From Cardiac MRI: A State-of-the-Art Review and Future Perspectives. Front Physiol 2021; 12:709230. [PMID: 34413789 PMCID: PMC8369509 DOI: 10.3389/fphys.2021.709230] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Accepted: 06/28/2021] [Indexed: 12/03/2022] Open
Abstract
Segmentation of cardiac fibrosis and scars is essential for clinical diagnosis and can provide invaluable guidance for the treatment of cardiac diseases. Late Gadolinium enhancement (LGE) cardiovascular magnetic resonance (CMR) has been successful in guiding the clinical diagnosis and treatment reliably. For LGE CMR, many methods have demonstrated success in accurately segmenting scarring regions. Co-registration with other non-contrast-agent (non-CA) modalities [e.g., balanced steady-state free precession (bSSFP) cine magnetic resonance imaging (MRI)] can further enhance the efficacy of automated segmentation of cardiac anatomies. Many conventional methods have been proposed to provide automated or semi-automated segmentation of scars. With the development of deep learning in recent years, we can also see more advanced methods that are more efficient in providing more accurate segmentations. This paper conducts a state-of-the-art review of conventional and current state-of-the-art approaches utilizing different modalities for accurate cardiac fibrosis and scar segmentation.
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Affiliation(s)
- Yinzhe Wu
- National Heart and Lung Institute, Faculty of Medicine, Imperial College London, London, United Kingdom.,Department of Bioengineering, Faculty of Engineering, Imperial College London, London, United Kingdom
| | - Zeyu Tang
- National Heart and Lung Institute, Faculty of Medicine, Imperial College London, London, United Kingdom.,Department of Bioengineering, Faculty of Engineering, Imperial College London, London, United Kingdom
| | - Binghuan Li
- Department of Bioengineering, Faculty of Engineering, Imperial College London, London, United Kingdom
| | - David Firmin
- National Heart and Lung Institute, Faculty of Medicine, Imperial College London, London, United Kingdom.,Cardiovascular Biomedical Research Unit, Royal Brompton Hospital, London, United Kingdom
| | - Guang Yang
- National Heart and Lung Institute, Faculty of Medicine, Imperial College London, London, United Kingdom.,Cardiovascular Biomedical Research Unit, Royal Brompton Hospital, London, United Kingdom
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Nikan S, Van Osch K, Bartling M, Allen DG, Rohani SA, Connors B, Agrawal SK, Ladak HM. PWD-3DNet: A Deep Learning-Based Fully-Automated Segmentation of Multiple Structures on Temporal Bone CT Scans. IEEE TRANSACTIONS ON IMAGE PROCESSING : A PUBLICATION OF THE IEEE SIGNAL PROCESSING SOCIETY 2020; 30:739-753. [PMID: 33226942 DOI: 10.1109/tip.2020.3038363] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The temporal bone is a part of the lateral skull surface that contains organs responsible for hearing and balance. Mastering surgery of the temporal bone is challenging because of this complex and microscopic three-dimensional anatomy. Segmentation of intra-temporal anatomy based on computed tomography (CT) images is necessary for applications such as surgical training and rehearsal, amongst others. However, temporal bone segmentation is challenging due to the similar intensities and complicated anatomical relationships among critical structures, undetectable small structures on standard clinical CT, and the amount of time required for manual segmentation. This paper describes a single multi-class deep learning-based pipeline as the first fully automated algorithm for segmenting multiple temporal bone structures from CT volumes, including the sigmoid sinus, facial nerve, inner ear, malleus, incus, stapes, internal carotid artery and internal auditory canal. The proposed fully convolutional network, PWD-3DNet, is a patch-wise densely connected (PWD) three-dimensional (3D) network. The accuracy and speed of the proposed algorithm was shown to surpass current manual and semi-automated segmentation techniques. The experimental results yielded significantly high Dice similarity scores and low Hausdorff distances for all temporal bone structures with an average of 86% and 0.755 millimeter (mm), respectively. We illustrated that overlapping in the inference sub-volumes improves the segmentation performance. Moreover, we proposed augmentation layers by using samples with various transformations and image artefacts to increase the robustness of PWD-3DNet against image acquisition protocols, such as smoothing caused by soft tissue scanner settings and larger voxel sizes used for radiation reduction. The proposed algorithm was tested on low-resolution CTs acquired by another center with different scanner parameters than the ones used to create the algorithm and shows potential for application beyond the particular training data used in the study.
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Feeny AK, Chung MK, Madabhushi A, Attia ZI, Cikes M, Firouznia M, Friedman PA, Kalscheur MM, Kapa S, Narayan SM, Noseworthy PA, Passman RS, Perez MV, Peters NS, Piccini JP, Tarakji KG, Thomas SA, Trayanova NA, Turakhia MP, Wang PJ. Artificial Intelligence and Machine Learning in Arrhythmias and Cardiac Electrophysiology. Circ Arrhythm Electrophysiol 2020; 13:e007952. [PMID: 32628863 PMCID: PMC7808396 DOI: 10.1161/circep.119.007952] [Citation(s) in RCA: 89] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Artificial intelligence (AI) and machine learning (ML) in medicine are currently areas of intense exploration, showing potential to automate human tasks and even perform tasks beyond human capabilities. Literacy and understanding of AI/ML methods are becoming increasingly important to researchers and clinicians. The first objective of this review is to provide the novice reader with literacy of AI/ML methods and provide a foundation for how one might conduct an ML study. We provide a technical overview of some of the most commonly used terms, techniques, and challenges in AI/ML studies, with reference to recent studies in cardiac electrophysiology to illustrate key points. The second objective of this review is to use examples from recent literature to discuss how AI and ML are changing clinical practice and research in cardiac electrophysiology, with emphasis on disease detection and diagnosis, prediction of patient outcomes, and novel characterization of disease. The final objective is to highlight important considerations and challenges for appropriate validation, adoption, and deployment of AI technologies into clinical practice.
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Affiliation(s)
- Albert K Feeny
- Cleveland Clinic Lerner College of Medicine (A.K.F., M.K.C.), Case Western Reserve University, OH
| | - Mina K Chung
- Cleveland Clinic Lerner College of Medicine (A.K.F., M.K.C.), Case Western Reserve University, OH
- Department of Cardiovascular Medicine, Cleveland Clinic, OH (M.K.C., K.G.T., S.A.T.)
| | - Anant Madabhushi
- Department of Biomedical Engineering (A.M., M.F.), Case Western Reserve University, OH
- Louis Stokes Cleveland Veterans Affairs Medical Center, Cleveland, OH (A.M.)
| | - Zachi I Attia
- Department of Cardiovascular Medicine, Mayo Clinic College of Medicine, Rochester, MN (Z.I.A., P.A.F., S.K., P.A.N., )
| | - Maja Cikes
- Department of Cardiovascular Diseases, University of Zagreb School of Medicine & University Hospital Center Zagreb, Croatia (M.C.)
| | - Marjan Firouznia
- Department of Biomedical Engineering (A.M., M.F.), Case Western Reserve University, OH
| | - Paul A Friedman
- Department of Cardiovascular Medicine, Mayo Clinic College of Medicine, Rochester, MN (Z.I.A., P.A.F., S.K., P.A.N., )
| | - Matthew M Kalscheur
- Division of Cardiovascular Medicine, Department of Medicine, School of Medicine & Public Health, University of Wisconsin (M.M.K.)
- William S. Middleton Veterans Hospital, Madison, WI (M.M.K.)
| | - Suraj Kapa
- Department of Cardiovascular Medicine, Mayo Clinic College of Medicine, Rochester, MN (Z.I.A., P.A.F., S.K., P.A.N., )
| | - Sanjiv M Narayan
- Division of Cardiovascular Medicine, Stanford University, CA (S.M.N., M.V.P., M.P.T., P.J.W.)
- Veterans Affairs Palo Alto Health Care System, CA (S.M.N., M.V.P., M.P.T., P.J.W.)
| | - Peter A Noseworthy
- Department of Cardiovascular Medicine, Mayo Clinic College of Medicine, Rochester, MN (Z.I.A., P.A.F., S.K., P.A.N., )
| | - Rod S Passman
- Division of Cardiology, Northwestern University, Feinberg School of Medicine, Chicago, IL (R.S.P.)
| | - Marco V Perez
- Division of Cardiovascular Medicine, Stanford University, CA (S.M.N., M.V.P., M.P.T., P.J.W.)
- Veterans Affairs Palo Alto Health Care System, CA (S.M.N., M.V.P., M.P.T., P.J.W.)
| | - Nicholas S Peters
- National Heart Lung Institute & Centre for Cardiac Engineering, Imperial College London, United Kingdom (N.S.P.)
| | - Jonathan P Piccini
- Duke Clinical Research Institute, Duke University Medical Center, Durham, NC (J.P.P.)
| | - Khaldoun G Tarakji
- Department of Cardiovascular Medicine, Cleveland Clinic, OH (M.K.C., K.G.T., S.A.T.)
| | - Suma A Thomas
- Department of Cardiovascular Medicine, Cleveland Clinic, OH (M.K.C., K.G.T., S.A.T.)
| | - Natalia A Trayanova
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, MD (N.A.T.)
| | - Mintu P Turakhia
- Division of Cardiovascular Medicine, Stanford University, CA (S.M.N., M.V.P., M.P.T., P.J.W.)
- Veterans Affairs Palo Alto Health Care System, CA (S.M.N., M.V.P., M.P.T., P.J.W.)
- Center for Digital Health, Stanford University School of Medicine, CA (M.P.T.)
| | - Paul J Wang
- Division of Cardiovascular Medicine, Stanford University, CA (S.M.N., M.V.P., M.P.T., P.J.W.)
- Veterans Affairs Palo Alto Health Care System, CA (S.M.N., M.V.P., M.P.T., P.J.W.)
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Jamart K, Xiong Z, Maso Talou GD, Stiles MK, Zhao J. Mini Review: Deep Learning for Atrial Segmentation From Late Gadolinium-Enhanced MRIs. Front Cardiovasc Med 2020; 7:86. [PMID: 32528977 PMCID: PMC7266934 DOI: 10.3389/fcvm.2020.00086] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2020] [Accepted: 04/21/2020] [Indexed: 12/12/2022] Open
Abstract
Segmentation and 3D reconstruction of the human atria is of crucial importance for precise diagnosis and treatment of atrial fibrillation, the most common cardiac arrhythmia. However, the current manual segmentation of the atria from medical images is a time-consuming, labor-intensive, and error-prone process. The recent emergence of artificial intelligence, particularly deep learning, provides an alternative solution to the traditional methods that fail to accurately segment atrial structures from clinical images. This has been illustrated during the recent 2018 Atrial Segmentation Challenge for which most of the challengers developed deep learning approaches for atrial segmentation, reaching high accuracy (>90% Dice score). However, as significant discrepancies exist between the approaches developed, many important questions remain unanswered, such as which deep learning architectures and methods to ensure reliability while achieving the best performance. In this paper, we conduct an in-depth review of the current state-of-the-art of deep learning approaches for atrial segmentation from late gadolinium-enhanced MRIs, and provide critical insights for overcoming the main hindrances faced in this task.
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Affiliation(s)
- Kevin Jamart
- Auckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand
| | - Zhaohan Xiong
- Auckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand
| | - Gonzalo D. Maso Talou
- Auckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand
| | - Martin K. Stiles
- Waikato Clinical School, Faculty of Medical and Health Sciences, The University of Auckland, Auckland, New Zealand
| | - Jichao Zhao
- Auckland Bioengineering Institute, The University of Auckland, Auckland, New Zealand
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Chen C, Qin C, Qiu H, Tarroni G, Duan J, Bai W, Rueckert D. Deep Learning for Cardiac Image Segmentation: A Review. Front Cardiovasc Med 2020; 7:25. [PMID: 32195270 PMCID: PMC7066212 DOI: 10.3389/fcvm.2020.00025] [Citation(s) in RCA: 355] [Impact Index Per Article: 71.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Accepted: 02/17/2020] [Indexed: 12/15/2022] Open
Abstract
Deep learning has become the most widely used approach for cardiac image segmentation in recent years. In this paper, we provide a review of over 100 cardiac image segmentation papers using deep learning, which covers common imaging modalities including magnetic resonance imaging (MRI), computed tomography (CT), and ultrasound and major anatomical structures of interest (ventricles, atria, and vessels). In addition, a summary of publicly available cardiac image datasets and code repositories are included to provide a base for encouraging reproducible research. Finally, we discuss the challenges and limitations with current deep learning-based approaches (scarcity of labels, model generalizability across different domains, interpretability) and suggest potential directions for future research.
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Affiliation(s)
- Chen Chen
- Biomedical Image Analysis Group, Department of Computing, Imperial College London, London, United Kingdom
| | - Chen Qin
- Biomedical Image Analysis Group, Department of Computing, Imperial College London, London, United Kingdom
| | - Huaqi Qiu
- Biomedical Image Analysis Group, Department of Computing, Imperial College London, London, United Kingdom
| | - Giacomo Tarroni
- Biomedical Image Analysis Group, Department of Computing, Imperial College London, London, United Kingdom
- CitAI Research Centre, Department of Computer Science, City University of London, London, United Kingdom
| | - Jinming Duan
- School of Computer Science, University of Birmingham, Birmingham, United Kingdom
| | - Wenjia Bai
- Data Science Institute, Imperial College London, London, United Kingdom
- Department of Brain Sciences, Faculty of Medicine, Imperial College London, London, United Kingdom
| | - Daniel Rueckert
- Biomedical Image Analysis Group, Department of Computing, Imperial College London, London, United Kingdom
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