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Oghabian Z, Ghaderi R, Mohammadi M, Nikbakht S. An Efficient Approach for Detection of Various Epileptic Waves Having Diverse Forms in Long Term EEG Based on Deep Learning. Brain Topogr 2025; 38:35. [PMID: 40035961 DOI: 10.1007/s10548-025-01111-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2024] [Accepted: 02/21/2025] [Indexed: 03/06/2025]
Abstract
EEG is the most powerful tool for epilepsy discharge detection in brain. Visual evaluation is hard in long term monitoring EEG data as huge amount of data needs to be inspected. Considering the fast and efficient results from deep learning networks especially convolutional networks, and its capability for detection of complex epileptic wave forms, inspired us to evaluate YOLO network for spike detection solution.The most used versions of YOLO (V3, V4 and V7) were evaluated for various epileptic signals. The epileptic discharge wave-forms were first labeled to 9 different signal types, but classified to four group combinations based on their features. EEG data from 20 patients were used under guidance of expert epileptologist. The YOLO networks were all trained for four various class-grouping strategies. The most suitable network to recommend was found to be YOLO-V4, for all four classifying methods giving average sensitivity, specificity, and accuracy of 96.7, 94.3, and 92.8, respectively. YOLO networks have shown promising results in detection of epileptic signals, which by adding some extra measurements this can become a great assistant tool for epileptologists. In addition, besides YOLO's High speed and accuracy in detection of epileptic signals in EEG, it can classify these signals to different morphologies.
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Affiliation(s)
- Zeinab Oghabian
- Faculty of Electrical Engineering, Shahid Beheshti University, Tehran, Iran
| | - Reza Ghaderi
- Faculty of Electrical Engineering, Shahid Beheshti University, Tehran, Iran.
| | - Mahmoud Mohammadi
- Department of Pediatric Neurology, School of Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran
| | - Sedighe Nikbakht
- Department of Pediatric Neurology, School of Medicine, Tehran University of Medical Sciences (TUMS), Tehran, Iran
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2
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Lin N, Zheng M, Li L, Hu P, Gao W, Sun H, Xu C, Yuan G, Liang Z, Dong Y, He H, Cui L, Lu Q. An EEG dataset for interictal epileptiform discharge with spatial distribution information. Sci Data 2025; 12:229. [PMID: 39920162 PMCID: PMC11805897 DOI: 10.1038/s41597-025-04572-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2024] [Accepted: 01/31/2025] [Indexed: 02/09/2025] Open
Abstract
Interictal epileptiform discharge (IED) and its spatial distribution are critical for the diagnosis, classification, and treatment of epilepsy. Existing publicly available datasets suffer from limitations such as insufficient data amount and lack of spatial distribution information. In this paper, we present a comprehensive EEG dataset containing annotated interictal epileptic data from 84 patients, each contributing 20 minutes of continuous raw EEG recordings, totaling 28 hours. IEDs and states of consciousness (wake/sleep) were meticulously annotated by at least three EEG experts. The IEDs were categorized into five types based on occurrence regions: generalized, frontal, temporal, occipital, and centro-parietal. The dataset includes 2,516 IED epochs and 22,933 non-IED epochs, each 4 seconds long. We developed and validated a VGG-based model for IED detection using this dataset, achieving improved performance with the inclusion of consciousness and/or spatial distribution information. Additionally, our dataset serves as a reliable test set for evaluating and comparing existing IED detection models.
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Affiliation(s)
- Nan Lin
- Department of Neurology, Peking Union Medical College Hospital, Beijing, 100730, China
| | - Mengxuan Zheng
- NetEase Media Technology Co., Ltd, Beijing, 100084, China
| | - Lian Li
- NetEase Media Technology Co., Ltd, Beijing, 100084, China
| | - Peng Hu
- NetEase Media Technology Co., Ltd, Beijing, 100084, China
| | - Weifang Gao
- Department of Neurology, Peking Union Medical College Hospital, Beijing, 100730, China
| | - Heyang Sun
- Department of Neurology, Peking Union Medical College Hospital, Beijing, 100730, China
| | - Chang Xu
- NetEase Media Technology Co., Ltd, Beijing, 100084, China
| | - Gonglin Yuan
- NetEase Media Technology Co., Ltd, Beijing, 100084, China
| | - Zi Liang
- NetEase Media Technology Co., Ltd, Beijing, 100084, China
| | - Yisu Dong
- NetEase Media Technology Co., Ltd, Beijing, 100084, China
| | - Haibo He
- NetEase Media Technology Co., Ltd, Beijing, 100084, China
| | - Liying Cui
- Department of Neurology, Peking Union Medical College Hospital, Beijing, 100730, China.
| | - Qiang Lu
- Department of Neurology, Peking Union Medical College Hospital, Beijing, 100730, China.
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3
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Islam T, Islam R, Basak M, Roy AD, Arman MA, Paul S, Shandra O, Ali SR. Performance investigation of epilepsy detection from noisy EEG signals using base-2-meta stacking classifier. Sci Rep 2024; 14:10792. [PMID: 38734752 PMCID: PMC11088643 DOI: 10.1038/s41598-024-61338-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Accepted: 05/04/2024] [Indexed: 05/13/2024] Open
Abstract
Epilepsy is a chronic neurological disease, characterized by spontaneous, unprovoked, recurrent seizures that may lead to long-term disability and premature death. Despite significant efforts made to improve epilepsy detection clinically and pre-clinically, the pervasive presence of noise in EEG signals continues to pose substantial challenges to their effective application. In addition, discriminant features for epilepsy detection have not been investigated yet. The objective of this study is to develop a hybrid model for epilepsy detection from noisy and fragmented EEG signals. We hypothesized that a hybrid model could surpass existing single models in epilepsy detection. Our approach involves manual noise rejection and a novel statistical channel selection technique to detect epilepsy even from noisy EEG signals. Our proposed Base-2-Meta stacking classifier achieved notable accuracy (0.98 ± 0.05), precision (0.98 ± 0.07), recall (0.98 ± 0.05), and F1 score (0.98 ± 0.04) even with noisy 5-s segmented EEG signals. Application of our approach to the specific problem like detection of epilepsy from noisy and fragmented EEG data reveals a performance that is not only superior to others, but also is translationally relevant, highlighting its potential application in a clinic setting, where EEG signals are often noisy or scanty. Our proposed metric DF-A (Discriminant feature-accuracy), for the first time, identified the most discriminant feature with models that give A accuracy or above (A = 95 used in this study). This groundbreaking approach allows for detecting discriminant features and can be used as potential electrographic biomarkers in epilepsy detection research. Moreover, our study introduces innovative insights into the understanding of these features, epilepsy detection, and cross-validation, markedly improving epilepsy detection in ways previously unavailable.
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Affiliation(s)
- Torikul Islam
- Department of Biomedical Engineering (BME), New Jersey Institute of Technology, Newark, NJ, USA.
- Department of Biomedical Engineering (BME), Khulna University of Engineering & Technology, Khulna, 9230, Bangladesh.
| | - Redwanul Islam
- Department of Biomedical Engineering (BME), Khulna University of Engineering & Technology, Khulna, 9230, Bangladesh
| | - Monisha Basak
- Department of Biomedical Engineering (BME), Khulna University of Engineering & Technology, Khulna, 9230, Bangladesh
| | - Amit Dutta Roy
- Department of Biomedical Engineering (BME), Khulna University of Engineering & Technology, Khulna, 9230, Bangladesh
| | - Md Adil Arman
- Department of Biomedical Engineering (BME), Florida International University, Miami, FL, USA
| | - Samanta Paul
- Department of Biomedical Engineering (BME), University of Cincinnati, Cincinnati, OH, USA
| | - Oleksii Shandra
- Department of Biomedical Engineering (BME), Florida International University, Miami, FL, USA
| | - Sk Rahat Ali
- Department of Biomedical Engineering (BME), Khulna University of Engineering & Technology, Khulna, 9230, Bangladesh
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4
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Islam T, Basak M, Islam R, Roy AD. Investigating population-specific epilepsy detection from noisy EEG signals using deep-learning models. Heliyon 2023; 9:e22208. [PMID: 38125491 PMCID: PMC10730439 DOI: 10.1016/j.heliyon.2023.e22208] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2023] [Revised: 10/28/2023] [Accepted: 11/06/2023] [Indexed: 12/23/2023] Open
Abstract
"Epilepsy is a chronic brain disorder that affects people of all ages. The cause of epilepsy is often unknown and its effect in different age groups is not yet investigated. The main objective of this study is to introduce a novel approach that successfully detects epilepsy even from noisy EEG signals. In addition, this study also investigates population specific epilepsy detection for providing novel insights. Correspondingly, we utilized the TUH EEG corpus database, publicly available challenging multi-channel EEG database containing detailed patient information. We applied a band-pass filter and manual noise rejection to remove noise and artifacts from EEG signals. We then utilized statistical features and correlation to select channels, and applied different transform analysis methods such as continuous wavelet transform, spectrogram, and Wigner-Ville distribution, with and without ensemble averaging, to construct an image dataset. Afterwards, we used various deep-learning models for general analysis. Our findings suggest that different models such as DenseNet201, DenseNet169, DenseNet121, VGG16, VGG19, Xception, InceptionV3, and MobileNetV2 performed better while using images generated from different approaches in general analysis. Furthermore, we split the dataset into two sections according to age for population analysis. All the models that performed well in the general analysis were used for population analysis, which provided novel insights in epilepsy detection from EEG. Our proposed framework for epilepsy detection achieved 100% accuracy, which outperforms other concurrent methods."
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Affiliation(s)
- Torikul Islam
- Department of Biomedical Engineering, Khulna University of Engineering & Technology, Bangladesh
| | - Monisha Basak
- Department of Biomedical Engineering, Khulna University of Engineering & Technology, Bangladesh
| | - Redwanul Islam
- Department of Biomedical Engineering, Khulna University of Engineering & Technology, Bangladesh
| | - Amit Dutta Roy
- Department of Biomedical Engineering, Khulna University of Engineering & Technology, Bangladesh
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5
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McDougall M, Albaqami H, Mubashar Hassan G, Datta A. Patient Independent Interictal Epileptiform Discharge Detection. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023; 2023:1-6. [PMID: 38082573 DOI: 10.1109/embc40787.2023.10341194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Epilepsy is a highly prevalent brain condition with many serious complications arising from it. The majority of patients which present to a clinic and undergo electroencephalogram (EEG) monitoring would be unlikely to experience seizures during the examination period, thus the presence of interictal epileptiform discharges (IEDs) become effective markers for the diagnosis of epilepsy. Furthermore, IED shapes and patterns are highly variable across individuals, yet trained experts are still able to identify them through EEG recordings - meaning that commonalities exist across IEDs that an algorithm can be trained on to detect and generalise to the larger population. This research proposes an IED detection system for the binary classification of epilepsy using scalp EEG recordings. The proposed system features an ensemble based deep learning method to boost the performance of a residual convolutional neural network, and a bidirectional long short-term memory network. This is implemented using raw EEG data, sourced from Temple University Hospital's EEG Epilepsy Corpus, and is found to outperform the current state of the art model for IED detection across the same dataset. The achieved accuracy and Area Under Curve (AUC) of 94.92% and 97.45% demonstrates the effectiveness of an ensemble method, and that IED detection can be achieved with high performance using raw scalp EEG data, thus showing promise for the proposed approach in clinical settings.
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6
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Chung YG, Lee WJ, Na SM, Kim H, Hwang H, Yun CH, Kim KJ. Deep learning-based automated detection and multiclass classification of focal interictal epileptiform discharges in scalp electroencephalograms. Sci Rep 2023; 13:6755. [PMID: 37185941 PMCID: PMC10130023 DOI: 10.1038/s41598-023-33906-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2023] [Accepted: 04/20/2023] [Indexed: 05/17/2023] Open
Abstract
Detection and spatial distribution analyses of interictal epileptiform discharges (IEDs) are important for diagnosing, classifying, and treating focal epilepsy. This study proposes deep learning-based models to detect focal IEDs in electroencephalography (EEG) recordings of the frontal, temporal, and occipital scalp regions. This study included 38 patients with frontal (n = 15), temporal (n = 13), and occipital (n = 10) IEDs and 232 controls without IEDs from a single tertiary center. All the EEG recordings were segmented into 1.5-s epochs and fed into 1- or 2-dimensional convolutional neural networks to construct binary classification models to detect IEDs in each focal region and multiclass classification models to categorize IEDs into frontal, temporal, and occipital regions. The binary classification models exhibited accuracies of 79.3-86.4%, 93.3-94.2%, and 95.5-97.2% for frontal, temporal, and occipital IEDs, respectively. The three- and four-class models exhibited accuracies of 87.0-88.7% and 74.6-74.9%, respectively, with temporal, occipital, and non-IEDs F1-scores of 89.9-92.3%, 84.9-90.6%, and 84.3-86.0%; and 86.6-86.7%, 86.8-87.2%, and 67.8-69.2% for the three- and four-class (frontal, 50.3-58.2%) models, respectively. The deep learning-based models could help enhance EEG interpretation. Although they performed well, the resolution of region-specific focal IED misinterpretations and further model improvement are needed.
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Affiliation(s)
- Yoon Gi Chung
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam-si, Republic of Korea
| | - Woo-Jin Lee
- Department of Neurology, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam-si, Republic of Korea
| | - Sung Min Na
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam-si, Republic of Korea
| | - Hunmin Kim
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam-si, Republic of Korea.
| | - Hee Hwang
- Division of Pediatric Neurology, Department of Pediatrics, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam-si, Republic of Korea
- Kakao Healthcare, Seongnam-si, Republic of Korea
| | - Chang-Ho Yun
- Department of Neurology, Seoul National University Bundang Hospital, Seoul National University College of Medicine, Seongnam-si, Republic of Korea
| | - Ki Joong Kim
- Department of Pediatrics, Seoul National University Children's Hospital, Seoul National University College of Medicine, Seoul, Republic of Korea
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7
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Ein Shoka AA, Dessouky MM, El-Sayed A, Hemdan EED. EEG seizure detection: concepts, techniques, challenges, and future trends. MULTIMEDIA TOOLS AND APPLICATIONS 2023:1-31. [PMID: 37362745 PMCID: PMC10071471 DOI: 10.1007/s11042-023-15052-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Revised: 08/07/2022] [Accepted: 02/27/2023] [Indexed: 06/28/2023]
Abstract
A central nervous system disorder is usually referred to as epilepsy. In epilepsy brain activity becomes abnormal, leading to times of abnormal behavior or seizures, and at times loss of awareness. Consequently, epilepsy patients face problems in daily life due to precautions they must take to adapt to this condition, particularly when they use heavy equipment, e.g., vehicle derivation. Epilepsy studies rely primarily on electroencephalography (EEG) signals to evaluate brain activity during seizures. It is troublesome and time-consuming to manually decide the location of seizures in EEG signals. The automatic detection framework is one of the principal tools to help doctors and patients take appropriate precautions. This paper reviews the epilepsy mentality disorder and the types of seizure, preprocessing operations that are performed on EEG data, a generally extracted feature from the signal, and a detailed view on classification procedures used in this problem and provide insights on the difficulties and future research directions in this innovative theme. Therefore, this paper presents a review of work on recent methods for the epileptic seizure process along with providing perspectives and concepts to researchers to present an automated EEG-based epileptic seizure detection system using IoT and machine learning classifiers for remote patient monitoring in the context of smart healthcare systems. Finally, challenges and open research points in EEG seizure detection are investigated.
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Affiliation(s)
- Athar A. Ein Shoka
- Faculty of Electronic Engineering, Computer Science and Engineering Department, Menoufia University, Menouf, Egypt
| | - Mohamed M. Dessouky
- Faculty of Electronic Engineering, Computer Science and Engineering Department, Menoufia University, Menouf, Egypt
- Department of Computer Science & Artificial Intelligence, College of Computer Science and Engineering, University of Jeddah, Jeddah, Saudi Arabia
| | - Ayman El-Sayed
- Faculty of Electronic Engineering, Computer Science and Engineering Department, Menoufia University, Menouf, Egypt
| | - Ezz El-Din Hemdan
- Faculty of Electronic Engineering, Computer Science and Engineering Department, Menoufia University, Menouf, Egypt
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8
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Cao J, Feng Y, Zheng R, Cui X, Zhao W, Jiang T, Gao F. Two-Stream Attention 3-D Deep Network-Based Childhood Epilepsy Syndrome Classification. IEEE TRANSACTIONS ON INSTRUMENTATION AND MEASUREMENT 2023; 72:1-12. [DOI: 10.1109/tim.2022.3220287] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2025]
Affiliation(s)
- Jiuwen Cao
- Machine Learning and I-Health International Cooperation Base of Zhejiang Province, Artificial Intelligence Institute, Hangzhou Dianzi University, Zhejiang, China
| | - Yuanmeng Feng
- Machine Learning and I-Health International Cooperation Base of Zhejiang Province, Artificial Intelligence Institute, Hangzhou Dianzi University, Zhejiang, China
| | - Runze Zheng
- Machine Learning and I-Health International Cooperation Base of Zhejiang Province, Artificial Intelligence Institute, Hangzhou Dianzi University, Zhejiang, China
| | - Xiaonan Cui
- Machine Learning and I-Health International Cooperation Base of Zhejiang Province, Artificial Intelligence Institute, Hangzhou Dianzi University, Zhejiang, China
| | - Weijie Zhao
- Machine Learning and I-Health International Cooperation Base of Zhejiang Province, Artificial Intelligence Institute, Hangzhou Dianzi University, Zhejiang, China
| | - Tiejia Jiang
- Department of Neurology, The Children’s Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou, China
| | - Feng Gao
- Machine Learning and I-Health International Cooperation Base of Zhejiang Province, Artificial Intelligence Institute, Hangzhou Dianzi University, Zhejiang, China
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9
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West C, Woldman W, Oak K, McLean B, Shankar R. A Review of Network and Computer Analysis of Epileptiform Discharge Free EEG to Characterize and Detect Epilepsy. Clin EEG Neurosci 2022; 53:74-78. [PMID: 33881950 DOI: 10.1177/15500594211008285] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Objectives. There is emerging evidence that network/computer analysis of epileptiform discharge free electroencephalograms (EEGs) can be used to detect epilepsy, improve diagnosis and resource use. Such methods are automated and can be performed on shorter recordings of EEG. We assess the evidence and its strength in the area of seizure detection from network/computer analysis of epileptiform discharge free EEG. Methods. A scoping review using Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidance was conducted with a literature search of Embase, Medline and PsychINFO. Predesigned inclusion/exclusion criteria were applied to selected articles. Results. The initial search found 3398 articles. After duplicate removal and screening, 591 abstracts were reviewed, 64 articles were selected and read leading to 20 articles meeting the requisite inclusion/exclusion criteria. These were 9 reports and 2 cross-sectional studies using network analysis to compare and/or classify EEG. One review of 17 reports and 10 cross-sectional studies only aimed to classify the EEGs. One cross-sectional study discussed EEG abnormalities associated with autism. Conclusions. Epileptiform discharge free EEG features derived from network/computer analysis differ significantly between people with and without epilepsy. Diagnostic algorithms report high accuracies and could be clinically useful. There is a lack of such research within the intellectual disability (ID) and/or autism populations, where epilepsy is more prevalent and there are additional diagnostic challenges.
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Affiliation(s)
- Caitlin West
- 171002Exeter Medical School, Knowledge Spa, Truro, UK
| | - Wessel Woldman
- Centre for Systems Modelling and Quantitative Biomedicine, 1724University of Birmingham, Birmingham, UK
| | - Katy Oak
- 8028Royal Cornwall Hospitals Trust Truro, Truro, UK
| | | | - Rohit Shankar
- 7491Cornwall Partnership NHS Foundation Trust, Truro, UK.,Cornwall Intellectual Disability Equitable Research (CIDER), University of Plymouth Medical School, Truro, UK
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10
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Mukhtar H, Qaisar SM, Zaguia A. Deep Convolutional Neural Network Regularization for Alcoholism Detection Using EEG Signals. SENSORS (BASEL, SWITZERLAND) 2021; 21:5456. [PMID: 34450899 PMCID: PMC8402228 DOI: 10.3390/s21165456] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Revised: 08/05/2021] [Accepted: 08/09/2021] [Indexed: 12/31/2022]
Abstract
Alcoholism is attributed to regular or excessive drinking of alcohol and leads to the disturbance of the neuronal system in the human brain. This results in certain malfunctioning of neurons that can be detected by an electroencephalogram (EEG) using several electrodes on a human skull at appropriate positions. It is of great interest to be able to classify an EEG activity as that of a normal person or an alcoholic person using data from the minimum possible electrodes (or channels). Due to the complex nature of EEG signals, accurate classification of alcoholism using only a small dataset is a challenging task. Artificial neural networks, specifically convolutional neural networks (CNNs), provide efficient and accurate results in various pattern-based classification problems. In this work, we apply CNN on raw EEG data and demonstrate how we achieved 98% average accuracy by optimizing a baseline CNN model and outperforming its results in a range of performance evaluation metrics on the University of California at Irvine Machine Learning (UCI-ML) EEG dataset. This article explains the stepwise improvement of the baseline model using the dropout, batch normalization, and kernel regularization techniques and provides a comparison of the two models that can be beneficial for aspiring practitioners who aim to develop similar classification models in CNN. A performance comparison is also provided with other approaches using the same dataset.
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Affiliation(s)
- Hamid Mukhtar
- Department of Computer Science, College of Computers and Information Technology, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia;
| | - Saeed Mian Qaisar
- Electrical and Computer Engineering Department, College of Engineering, Effat University, Jeddah 22332, Saudi Arabia;
- Communication and Signal Processing Lab, Energy and Technology Research Centre, Effat University, Jeddah 22332, Saudi Arabia
| | - Atef Zaguia
- Department of Computer Science, College of Computers and Information Technology, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia;
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11
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A Study on Seizure Detection of EEG Signals Represented in 2D. SENSORS 2021; 21:s21155145. [PMID: 34372381 PMCID: PMC8348755 DOI: 10.3390/s21155145] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 07/25/2021] [Accepted: 07/26/2021] [Indexed: 12/11/2022]
Abstract
A seizure is a neurological disorder caused by abnormal neuronal discharges in the brain, which severely reduces the quality of life of patients and often endangers their lives. Automatic seizure detection is an important research area in the treatment of seizure and is a prerequisite for seizure intervention. Deep learning has been widely used for automatic detection of seizures, and many related research works decomposed the electroencephalogram (EEG) raw signal with a time window to obtain EEG signal slices, then performed feature extraction on the slices, and represented the obtained features as input data for neural networks. There are various methods for EEG signal decomposition, feature extraction, and representation, and most of the studies have been based on fixed hardware resources for the design of the scheme, which reduces the adaptability of the scheme in different application scenarios and makes it difficult to optimize the algorithms in the scheme. To address the above issues, this paper proposes a deep learning-based model for seizure detection, mainly characterized by the two-dimensional representation of EEG features and the scalability of neural networks. The model modularizes the main steps of seizure detection and improves the adaptability of the model to different hardware resource constraints, in order to increase the convenience of the algorithm optimization or the replacement of each module. The proposed model consists of five parts, and the model was tested using two epilepsy datasets separately. The experimental results showed that the proposed model has strong generality and good classification accuracy for seizure detection.
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12
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Thangavel P, Thomas J, Peh WY, Jing J, Yuvaraj R, Cash SS, Chaudhari R, Karia S, Rathakrishnan R, Saini V, Shah N, Srivastava R, Tan YL, Westover B, Dauwels J. Time-Frequency Decomposition of Scalp Electroencephalograms Improves Deep Learning-Based Epilepsy Diagnosis. Int J Neural Syst 2021; 31:2150032. [PMID: 34278972 DOI: 10.1142/s0129065721500325] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Epilepsy diagnosis based on Interictal Epileptiform Discharges (IEDs) in scalp electroencephalograms (EEGs) is laborious and often subjective. Therefore, it is necessary to build an effective IED detector and an automatic method to classify IED-free versus IED EEGs. In this study, we evaluate features that may provide reliable IED detection and EEG classification. Specifically, we investigate the IED detector based on convolutional neural network (ConvNet) with different input features (temporal, spectral, and wavelet features). We explore different ConvNet architectures and types, including 1D (one-dimensional) ConvNet, 2D (two-dimensional) ConvNet, and noise injection at various layers. We evaluate the EEG classification performance on five independent datasets. The 1D ConvNet with preprocessed full-frequency EEG signal and frequency bands (delta, theta, alpha, beta) with Gaussian additive noise at the output layer achieved the best IED detection results with a false detection rate of 0.23/min at 90% sensitivity. The EEG classification system obtained a mean EEG classification Leave-One-Institution-Out (LOIO) cross-validation (CV) balanced accuracy (BAC) of 78.1% (area under the curve (AUC) of 0.839) and Leave-One-Subject-Out (LOSO) CV BAC of 79.5% (AUC of 0.856). Since the proposed classification system only takes a few seconds to analyze a 30-min routine EEG, it may help in reducing the human effort required for epilepsy diagnosis.
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Affiliation(s)
| | | | | | - Jin Jing
- Massachusetts General Hospital and Harvard Medical School, USA
| | - Rajamanickam Yuvaraj
- Nanyang Technological University, Singapore.,National Institute of Education, Singapore
| | - Sydney S Cash
- Massachusetts General Hospital and Harvard Medical School, USA
| | | | - Sagar Karia
- Lokmanya Tilak Municipal General Hospital, India
| | | | - Vinay Saini
- Department of Biosciences and Bioengineering, IIT Bombay, India
| | - Nilesh Shah
- Lokmanya Tilak Municipal General Hospital, India
| | | | | | | | - Justin Dauwels
- Nanyang Technological University, Singapore.,Delft University of Technology, Netherlands
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13
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Madanu R, Rahman F, Abbod MF, Fan SZ, Shieh JS. Depth of anesthesia prediction via EEG signals using convolutional neural network and ensemble empirical mode decomposition. MATHEMATICAL BIOSCIENCES AND ENGINEERING : MBE 2021; 18:5047-5068. [PMID: 34517477 DOI: 10.3934/mbe.2021257] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
According to a recently conducted survey on surgical complication mortality rate, 47% of such cases are due to anesthetics overdose. This indicates that there is an urgent need to moderate the level of anesthesia. Recently deep learning (DL) methods have played a major role in estimating the depth of Anesthesia (DOA) of patients and has played an essential role in control anesthesia overdose. In this paper, Electroencephalography (EEG) signals have been used for the prediction of DOA. EEG signals are very complex signals which may require months of training and advanced signal processing techniques. It is a point of debate whether DL methods are an improvement over the already existing traditional EEG signal processing approaches. One of the DL algorithms is Convolutional neural network (CNN) which is very popular algorithm for object recognition and is widely growing its applications in processing hierarchy in the human visual system. In this paper, various decomposition methods have been used for extracting the features EEG signal. After acquiring the necessary signals values in image format, several CNN models have been deployed for classification of DOA depending upon their Bispectral Index (BIS) and the signal quality index (SQI). The EEG signals were converted into the frequency domain using and Empirical Mode Decomposition (EMD), and Ensemble Empirical Mode Decomposition (EEMD). However, because of the inter mode mixing observed in EMD method; EEMD have been utilized for this study. The developed CNN models were used to predict the DOA based on the EEG spectrum images without the use of handcrafted features which provides intuitive mapping with high efficiency and reliability. The best trained model gives an accuracy of 83.2%. Hence, this provides further scope and research which can be carried out in the domain of visual mapping of DOA using EEG signals and DL methods.
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Affiliation(s)
- Ravichandra Madanu
- Department of Mechanical Engineering, Yuan Ze University, Taoyuan 320, Taiwan
| | - Farhan Rahman
- Department of Electronics and Communication Engineering, Vellore Institute of Technology, Tamil Nadu 632014, India
| | - Maysam F Abbod
- Department of Electronic and Computer Engineering, Brunel University London, Uxbridge UB8 3PH, UK
| | - Shou-Zen Fan
- Department of Anesthesiology, College of Medicine, National Taiwan University, Taipei 100, Taiwan
| | - Jiann-Shing Shieh
- Department of Mechanical Engineering, Yuan Ze University, Taoyuan 320, Taiwan
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14
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Saminu S, Xu G, Shuai Z, Abd El Kader I, Jabire AH, Ahmed YK, Karaye IA, Ahmad IS. A Recent Investigation on Detection and Classification of Epileptic Seizure Techniques Using EEG Signal. Brain Sci 2021; 11:668. [PMID: 34065473 PMCID: PMC8160878 DOI: 10.3390/brainsci11050668] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Revised: 05/14/2021] [Accepted: 05/16/2021] [Indexed: 02/07/2023] Open
Abstract
The benefits of early detection and classification of epileptic seizures in analysis, monitoring and diagnosis for the realization and actualization of computer-aided devices and recent internet of medical things (IoMT) devices can never be overemphasized. The success of these applications largely depends on the accuracy of the detection and classification techniques employed. Several methods have been investigated, proposed and developed over the years. This paper investigates various seizure detection algorithms and classifications in the last decade, including conventional techniques and recent deep learning algorithms. It also discusses epileptiform detection as one of the steps towards advanced diagnoses of disorders of consciousness (DOCs) and their understanding. A performance comparison was carried out on the different algorithms investigated, and their advantages and disadvantages were explored. From our survey, much attention has recently been paid to exploring the efficacy of deep learning algorithms in seizure detection and classification, which are employed in other areas such as image processing and classification. Hybrid deep learning has also been explored, with CNN-RNN being the most popular.
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Affiliation(s)
- Sani Saminu
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin 300130, China; (Z.S.); (I.A.E.K.); (I.A.K.); (I.S.A.)
- Biomedical Engineering Department, University of Ilorin, P.M.B 1515, Ilorin 240003, Nigeria;
| | - Guizhi Xu
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin 300130, China; (Z.S.); (I.A.E.K.); (I.A.K.); (I.S.A.)
| | - Zhang Shuai
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin 300130, China; (Z.S.); (I.A.E.K.); (I.A.K.); (I.S.A.)
| | - Isselmou Abd El Kader
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin 300130, China; (Z.S.); (I.A.E.K.); (I.A.K.); (I.S.A.)
| | - Adamu Halilu Jabire
- Department of Electrical and Electronics Engineering, Taraba State University, Jalingo 660242, Nigeria;
| | - Yusuf Kola Ahmed
- Biomedical Engineering Department, University of Ilorin, P.M.B 1515, Ilorin 240003, Nigeria;
| | - Ibrahim Abdullahi Karaye
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin 300130, China; (Z.S.); (I.A.E.K.); (I.A.K.); (I.S.A.)
| | - Isah Salim Ahmad
- State Key Laboratory of Reliability and Intelligence of Electrical Equipment, Hebei University of Technology, Tianjin 300130, China; (Z.S.); (I.A.E.K.); (I.A.K.); (I.S.A.)
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15
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Peh WY, Thomas J, Bagheri E, Chaudhari R, Karia S, Rathakrishnan R, Saini V, Shah N, Srivastava R, Tan YL, Dauwels J. Multi-Center Validation Study of Automated Classification of Pathological Slowing in Adult Scalp Electroencephalograms Via Frequency Features. Int J Neural Syst 2021; 31:2150016. [PMID: 33775230 DOI: 10.1142/s0129065721500167] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Pathological slowing in the electroencephalogram (EEG) is widely investigated for the diagnosis of neurological disorders. Currently, the gold standard for slowing detection is the visual inspection of the EEG by experts, which is time-consuming and subjective. To address those issues, we propose three automated approaches to detect slowing in EEG: Threshold-based Detection System (TDS), Shallow Learning-based Detection System (SLDS), and Deep Learning-based Detection System (DLDS). These systems are evaluated on channel-, segment-, and EEG-level. The three systems perform prediction via detecting slowing at individual channels, and those detections are arranged in histograms for detection of slowing at the segment- and EEG-level. We evaluate the systems through Leave-One-Subject-Out (LOSO) cross-validation (CV) and Leave-One-Institution-Out (LOIO) CV on four datasets from the US, Singapore, and India. The DLDS achieved the best overall results: LOIO CV mean balanced accuracy (BAC) of 71.9%, 75.5%, and 82.0% at channel-, segment- and EEG-level, and LOSO CV mean BAC of 73.6%, 77.2%, and 81.8% at channel-, segment-, and EEG-level. The channel- and segment-level performance is comparable to the intra-rater agreement (IRA) of an expert of 72.4% and 82%. The DLDS can process a 30 min EEG in 4 s and can be deployed to assist clinicians in interpreting EEGs.
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Affiliation(s)
| | | | | | | | - Sagar Karia
- Lokmanya Tilak Municipal General Hospital, India
| | | | - Vinay Saini
- Department of Biosciences and Bioengineering, IIT Bombay, India
| | - Nilesh Shah
- Lokmanya Tilak Municipal General Hospital, India
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16
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Thomas J, Thangavel P, Peh WY, Jing J, Yuvaraj R, Cash SS, Chaudhari R, Karia S, Rathakrishnan R, Saini V, Shah N, Srivastava R, Tan YL, Westover B, Dauwels J. Automated Adult Epilepsy Diagnostic Tool Based on Interictal Scalp Electroencephalogram Characteristics: A Six-Center Study. Int J Neural Syst 2021; 31:2050074. [PMID: 33438530 DOI: 10.1142/s0129065720500744] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The diagnosis of epilepsy often relies on a reading of routine scalp electroencephalograms (EEGs). Since seizures are highly unlikely to be detected in a routine scalp EEG, the primary diagnosis depends heavily on the visual evaluation of Interictal Epileptiform Discharges (IEDs). This process is tedious, expert-centered, and delays the treatment plan. Consequently, the development of an automated, fast, and reliable epileptic EEG diagnostic system is essential. In this study, we propose a system to classify EEG as epileptic or normal based on multiple modalities extracted from the interictal EEG. The ensemble system consists of three components: a Convolutional Neural Network (CNN)-based IED detector, a Template Matching (TM)-based IED detector, and a spectral feature-based classifier. We evaluate the system on datasets from six centers from the USA, Singapore, and India. The system yields a mean Leave-One-Institution-Out (LOIO) cross-validation (CV) area under curve (AUC) of 0.826 (balanced accuracy (BAC) of 76.1%) and Leave-One-Subject-Out (LOSO) CV AUC of 0.812 (BAC of 74.8%). The LOIO results are found to be similar to the interrater agreement (IRA) reported in the literature for epileptic EEG classification. Moreover, as the proposed system can process routine EEGs in a few seconds, it may aid the clinicians in diagnosing epilepsy efficiently.
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Affiliation(s)
| | | | | | - Jin Jing
- Massachusetts General Hospital, Boston MA 02114, USA.,Harvard Medical School, Boston, MA 02115, USA
| | | | - Sydney S Cash
- Massachusetts General Hospital, Boston MA 02114, USA.,Harvard Medical School, Boston, MA 02115, USA
| | | | - Sagar Karia
- Lokmanya Tilak Municipal General Hospital, Mumbai, India
| | | | - Vinay Saini
- Department of Biosciences and Bioengineering, IIT Bombay, Mumbai, India
| | - Nilesh Shah
- Lokmanya Tilak Municipal General Hospital, Mumbai, India
| | - Rohit Srivastava
- Department of Biosciences and Bioengineering, IIT Bombay, Mumbai, India
| | | | - Brandon Westover
- Massachusetts General Hospital, Boston MA 02114, USA.,Harvard Medical School, Boston, MA 02115, USA
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17
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Chowdhury MSN, Dutta A, Robison MK, Blais C, Brewer GA, Bliss DW. Deep Neural Network for Visual Stimulus-Based Reaction Time Estimation Using the Periodogram of Single-Trial EEG. SENSORS (BASEL, SWITZERLAND) 2020; 20:E6090. [PMID: 33120869 PMCID: PMC7662233 DOI: 10.3390/s20216090] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 10/19/2020] [Accepted: 10/23/2020] [Indexed: 12/14/2022]
Abstract
Multiplexed deep neural networks (DNN) have engendered high-performance predictive models gaining popularity for decoding brain waves, extensively collected in the form of electroencephalogram (EEG) signals. In this paper, to the best of our knowledge, we introduce a first-ever DNN-based generalized approach to estimate reaction time (RT) using the periodogram representation of single-trial EEG in a visual stimulus-response experiment with 48 participants. We have designed a Fully Connected Neural Network (FCNN) and a Convolutional Neural Network (CNN) to predict and classify RTs for each trial. Though deep neural networks are widely known for classification applications, cascading FCNN/CNN with the Random Forest model, we designed a robust regression-based estimator to predict RT. With the FCNN model, the accuracies obtained for binary and 3-class classification were 93% and 76%, respectively, which further improved with the use of CNN (94% and 78%, respectively). The regression-based approach predicted RTs with correlation coefficients (CC) of 0.78 and 0.80 for FCNN and CNN, respectively. Investigating further, we found that the left central as well as parietal and occipital lobes were crucial for predicting RT, with significant activities in the theta and alpha frequency bands.
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Affiliation(s)
- Mohammad Samin Nur Chowdhury
- School of Electrical, Computer & Energy Engineering, Arizona State University, Tempe, AZ 85281, USA; (A.D.); (D.W.B.)
| | - Arindam Dutta
- School of Electrical, Computer & Energy Engineering, Arizona State University, Tempe, AZ 85281, USA; (A.D.); (D.W.B.)
| | - Matthew Kyle Robison
- Department of Psychology, The University of Texas at Arlington, Arlington, TX 76019, USA;
| | - Chris Blais
- Department of Psychology, Arizona State University, Tempe, AZ 85281, USA; (C.B.); (G.A.B.)
| | - Gene Arnold Brewer
- Department of Psychology, Arizona State University, Tempe, AZ 85281, USA; (C.B.); (G.A.B.)
| | - Daniel Wesley Bliss
- School of Electrical, Computer & Energy Engineering, Arizona State University, Tempe, AZ 85281, USA; (A.D.); (D.W.B.)
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18
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Thomas J, Jin J, Thangavel P, Bagheri E, Yuvaraj R, Dauwels J, Rathakrishnan R, Halford JJ, Cash SS, Westover B. Automated Detection of Interictal Epileptiform Discharges from Scalp Electroencephalograms by Convolutional Neural Networks. Int J Neural Syst 2020; 30:2050030. [PMID: 32812468 DOI: 10.1142/s0129065720500306] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Visual evaluation of electroencephalogram (EEG) for Interictal Epileptiform Discharges (IEDs) as distinctive biomarkers of epilepsy has various limitations, including time-consuming reviews, steep learning curves, interobserver variability, and the need for specialized experts. The development of an automated IED detector is necessary to provide a faster and reliable diagnosis of epilepsy. In this paper, we propose an automated IED detector based on Convolutional Neural Networks (CNNs). We have evaluated the proposed IED detector on a sizable database of 554 scalp EEG recordings (84 epileptic patients and 461 nonepileptic subjects) recorded at Massachusetts General Hospital (MGH), Boston. The proposed CNN IED detector has achieved superior performance in comparison with conventional methods with a mean cross-validation area under the precision-recall curve (AUPRC) of 0.838[Formula: see text]±[Formula: see text]0.040 and false detection rate of 0.2[Formula: see text]±[Formula: see text]0.11 per minute for a sensitivity of 80%. We demonstrated the proposed system to be noninferior to 30 neurologists on a dataset from the Medical University of South Carolina (MUSC). Further, we clinically validated the system at National University Hospital (NUH), Singapore, with an agreement accuracy of 81.41% with a clinical expert. Moreover, the proposed system can be applied to EEG recordings with any arbitrary number of channels.
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Affiliation(s)
- John Thomas
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Jing Jin
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Prasanth Thangavel
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Elham Bagheri
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Rajamanickam Yuvaraj
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Justin Dauwels
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore 639798, Singapore
| | - Rahul Rathakrishnan
- Division of Neurology, National University Hospital, Singapore 119074, Singapore
| | - Jonathan J Halford
- Department of Neurology, Medical University of South Carolina, Charleston, SC 29425, USA
| | - Sydney S Cash
- Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, USA.,Harvard Medical School, Boston, MA 02115, USA
| | - Brandon Westover
- Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, USA.,Harvard Medical School, Boston, MA 02115, USA
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19
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Prasanth T, Thomas J, Yuvaraj R, Jing J, Cash SS, Chaudhari R, Leng TY, Rathakrishnan R, Rohit S, Saini V, Westover BM, Dauwels J. Deep Learning for Interictal Epileptiform Spike Detection from scalp EEG frequency sub bands. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2020; 2020:3703-3706. [PMID: 33018805 PMCID: PMC7545315 DOI: 10.1109/embc44109.2020.9175644] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Epilepsy diagnosis through visual examination of interictal epileptiform discharges (IEDs) in scalp electroencephalogram (EEG) signals is a challenging problem. Deep learning methods can be an automated way to perform this task. In this work, we present a new approach based on convolutional neural network (CNN) to detect IEDs from EEGs automatically. The input to CNN is a combination of raw EEG and frequency sub-bands, namely delta, theta, alpha and, beta arranged as a vector for one-dimensional (1D) CNN or matrix for two-dimensional (2D) CNN. The proposed method is evaluated on 554 scalp EEGs. The database consists of 18,164 IEDs marked by two neurologists. Five-fold cross-validation was performed to assess the IED detectors. The resulting 1D CNN based IED detector with multiple sub-bands achieved a false positive rate per minute of 0.23 and a precision of 0.79 at 90% sensitivity. Further, the proposed system is evaluated on datasets from three other clinics, and the features extracted from CNN outputs could significantly discriminate (p-values <; 0.05) the EEGs with and without IEDs. We have proposed an optimized method with better performance than the literature that could aid clinicians to diagnose epilepsy expeditiously, and thereby devise proper treatment.
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20
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Deep Learning for Interictal Epileptiform Discharge Detection from Scalp EEG Recordings. IFMBE PROCEEDINGS 2020. [DOI: 10.1007/978-3-030-31635-8_237] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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