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Zhao X, Zhou R, Ning L, Guo Q, Liang Y, Yang J. Atrial Fibrillation Detection with Single-Lead Electrocardiogram Based on Temporal Convolutional Network-ResNet. SENSORS (BASEL, SWITZERLAND) 2024; 24:398. [PMID: 38257491 PMCID: PMC10820095 DOI: 10.3390/s24020398] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 12/14/2023] [Accepted: 12/18/2023] [Indexed: 01/24/2024]
Abstract
Atrial fibrillation, one of the most common persistent cardiac arrhythmias globally, is known for its rapid and irregular atrial rhythms. This study integrates the temporal convolutional network (TCN) and residual network (ResNet) frameworks to effectively classify atrial fibrillation in single-lead ECGs, thereby enhancing the application of neural networks in this field. Our model demonstrated significant success in detecting atrial fibrillation, with experimental results showing an accuracy rate of 97% and an F1 score of 87%. These figures indicate the model's exceptional performance in identifying both majority and minority classes, reflecting its balanced and accurate classification capability. This research offers new perspectives and tools for diagnosis and treatment in cardiology, grounded in advanced neural network technology.
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Affiliation(s)
- Xiangyu Zhao
- ShenSi Lab, Shenzhen Institute for Advanced Study, University of Electronic Science and Technology of China, Chengdu 518110, China; (X.Z.); (R.Z.); (L.N.); (Q.G.)
| | - Rong Zhou
- ShenSi Lab, Shenzhen Institute for Advanced Study, University of Electronic Science and Technology of China, Chengdu 518110, China; (X.Z.); (R.Z.); (L.N.); (Q.G.)
- National Supercomputing Center in Shenzhen, Shenzhen 518005, China
| | - Li Ning
- ShenSi Lab, Shenzhen Institute for Advanced Study, University of Electronic Science and Technology of China, Chengdu 518110, China; (X.Z.); (R.Z.); (L.N.); (Q.G.)
| | - Qiuquan Guo
- ShenSi Lab, Shenzhen Institute for Advanced Study, University of Electronic Science and Technology of China, Chengdu 518110, China; (X.Z.); (R.Z.); (L.N.); (Q.G.)
| | - Yan Liang
- ShenSi Lab, Shenzhen Institute for Advanced Study, University of Electronic Science and Technology of China, Chengdu 518110, China; (X.Z.); (R.Z.); (L.N.); (Q.G.)
- School of Resources and Environment, University of Electronic Science and Technology of China, Chengdu 611731, China
| | - Jun Yang
- ShenSi Lab, Shenzhen Institute for Advanced Study, University of Electronic Science and Technology of China, Chengdu 518110, China; (X.Z.); (R.Z.); (L.N.); (Q.G.)
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Patel S, Wang M, Guo J, Smith G, Chen C. A Study of R-R Interval Transition Matrix Features for Machine Learning Algorithms in AFib Detection. SENSORS (BASEL, SWITZERLAND) 2023; 23:3700. [PMID: 37050761 PMCID: PMC10099376 DOI: 10.3390/s23073700] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Revised: 03/14/2023] [Accepted: 03/28/2023] [Indexed: 06/19/2023]
Abstract
Atrial Fibrillation (AFib) is a heart condition that occurs when electrophysiological malformations within heart tissues cause the atria to lose coordination with the ventricles, resulting in "irregularly irregular" heartbeats. Because symptoms are subtle and unpredictable, AFib diagnosis is often difficult or delayed. One possible solution is to build a system which predicts AFib based on the variability of R-R intervals (the distances between two R-peaks). This research aims to incorporate the transition matrix as a novel measure of R-R variability, while combining three segmentation schemes and two feature importance measures to systematically analyze the significance of individual features. The MIT-BIH dataset was first divided into three segmentation schemes, consisting of 5-s, 10-s, and 25-s subsets. In total, 21 various features, including the transition matrix features, were extracted from these subsets and used for the training of 11 machine learning classifiers. Next, permutation importance and tree-based feature importance calculations determined the most predictive features for each model. In summary, with Leave-One-Person-Out Cross Validation, classifiers under the 25-s segmentation scheme produced the best accuracies; specifically, Gradient Boosting (96.08%), Light Gradient Boosting (96.11%), and Extreme Gradient Boosting (96.30%). Among eleven classifiers, the three gradient boosting models and Random Forest exhibited the highest overall performance across all segmentation schemes. Moreover, the permutation and tree-based importance results demonstrated that the transition matrix features were most significant with longer subset lengths.
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Affiliation(s)
- Sahil Patel
- John T. Hoggard High School, Wilmington, NC 28403, USA
- Department of Mathematics and Statistics, University of North Carolina Wilmington, Wilmington, NC 28403, USA
| | - Maximilian Wang
- Department of Mathematics and Statistics, University of North Carolina Wilmington, Wilmington, NC 28403, USA
- Isaac M. Bear Early College High School, Wilmington, NC 28403, USA
| | - Justin Guo
- Department of Computer Science, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA
| | - Georgia Smith
- Department of Biostatistics, University of Colorado’s Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Cuixian Chen
- Department of Mathematics and Statistics, University of North Carolina Wilmington, Wilmington, NC 28403, USA
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3
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Chen Z, Wang M, Zhang M, Huang W, Gu H, Xu J. Post-processing refined ECG delineation based on 1D-UNet. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104106] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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4
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Sun Z, Junttila J, Tulppo M, Seppanen T, Li X. Non-Contact Atrial Fibrillation Detection From Face Videos by Learning Systolic Peaks. IEEE J Biomed Health Inform 2022; 26:4587-4598. [PMID: 35867368 DOI: 10.1109/jbhi.2022.3193117] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
OBJECTIVE We propose a non-contact approach for atrial fibrillation (AF) detection from face videos. METHODS Face videos, electrocardiography (ECG), and contact photoplethysmography (PPG) from 100 healthy subjects and 100 AF patients are recorded. Data recordings from healthy subjects are all labeled as healthy. Two cardiologists evaluated ECG recordings of patients and labeled each recording as AF, sinus rhythm (SR), or atrial flutter (AFL). We use the 3D convolutional neural network for remote PPG monitoring and propose a novel loss function (Wasserstein distance) to use the timing of systolic peaks from contact PPG as the label for our model training. Then a set of heart rate variability (HRV) features are calculated from the inter-beat intervals, and a support vector machine (SVM) classifier is trained with HRV features. RESULTS Our proposed method can accurately extract systolic peaks from face videos for AF detection. The proposed method is trained with subject-independent 10-fold cross-validation with 30s video clips and tested on two tasks. 1) Classification of healthy versus AF: the accuracy, sensitivity, and specificity are 96.00%, 95.36%, and 96.12%. 2) Classification of SR versus AF: the accuracy, sensitivity, and specificity are 95.23%, 98.53%, and 91.12%. In addition, we also demonstrate the feasibility of non-contact AFL detection. CONCLUSION We achieve good performance of non-contact AF detection by learning systolic peaks. SIGNIFICANCE non-contact AF detection can be used for self-screening of AF symptoms for suspectable populations at home or self-monitoring of AF recurrence after treatment for chronic patients.
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Rohr M, Reich C, Höhl A, Lilienthal T, Dege T, Plesinger F, Bulkova V, Clifford GD, Reyna MA, Hoog Antink C. Exploring novel algorithms for atrial fibrillation detection by driving graduate level education in medical machine learning. Physiol Meas 2022; 43. [PMID: 35697013 DOI: 10.1088/1361-6579/ac7840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 06/13/2022] [Indexed: 11/12/2022]
Abstract
During the lockdown of universities and the COVID-Pandemic most students were restricted to their homes. Novel and instigating teaching methods were required to improve the learning experience and so recent implementations of the annual PhysioNet / Computing in Cardiology (CinC) Challenges posed as a reference. For over 20 years, the challenges have proven repeatedly to be of immense educational value, besides leading to technological advances for specific problems. In this paper, we report results from the class "Artificial Intelligence in Medicine Challenge", which was implemented as an online project seminar at Technical University Darmstadt, Germany, and which was heavily inspired by the PhysioNet / CinC Challenge 2017 "AF Classification from a Short Single Lead ECG Recording". Atrial fibrillation is a common cardiac disease and often remains undetected. Therefore, we selected the two most promising models of the course and give an insight into the Transformer-based DualNet architecture as well as into the CNN-LSTM-based model and finally a detailed analysis for both. In particular, we show the model performance results of our internal scoring process for all submitted models and the near state-of-the-art model performance for the two named models on the official 2017 challenge test set. Several teams were able to achieve F1 scores above / close to 90 % on a hidden test-set of Holter recordings. We highlight themes commonly observed among participants,and report the results from the self-assessed student evaluation. Finally, the self-assessment of the students reported a notable increase in machine learning knowledge.
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Affiliation(s)
- Maurice Rohr
- Künstlich Intelligente Systeme der Medizin, Technische Universität Darmstadt, Merckstraße 25, Darmstadt, Hessen, 64283, GERMANY
| | - Christoph Reich
- Künstlich Intelligente Systeme der Medizin, Technische Universität Darmstadt, Merckstraße 25, Darmstadt, Hessen, 64283, GERMANY
| | - Andreas Höhl
- Künstlich Intelligente Systeme der Medizin, Technische Universität Darmstadt, Merckstraße 25, Darmstadt, Hessen, 64283, GERMANY
| | - Timm Lilienthal
- Künstlich Intelligente Systeme der Medizin, Technische Universität Darmstadt, Merckstraße 25, Darmstadt, Hessen, 64283, GERMANY
| | - Tizian Dege
- Künstlich Intelligente Systeme der Medizin, Technische Universität Darmstadt, Merckstraße 25, Darmstadt, Hessen, 64283, GERMANY
| | - Filip Plesinger
- Medical Signals, Institute of Scientific Instruments of the Czech Academy of Sciences, v. v. i., Kralovopolska 147, Brno, 61264, CZECH REPUBLIC
| | - Veronika Bulkova
- Medical Data Transfer, s.r.o., Mojžíšova 2901/17, Kralovo Pole, Brno, 612 00, CZECH REPUBLIC
| | - Gari D Clifford
- Department of Biomedical Informatics, Emory University, 36 Eagle Row, #571, MS 2045-001-1AC, Atlanta, GA 30322, Atlanta, Georgia, 30322-1007, UNITED STATES
| | - Matthew A Reyna
- Biomedical Informatics, Emory University, 101 Woodruff Circle, 4th Floor East, Office 4119, Atlanta, Atlanta, Georgia, 30322, UNITED STATES
| | - Christoph Hoog Antink
- Künstlich Intelligente Systeme der Medizin, Technische Universität Darmstadt, Merckstraße 25, Darmstadt, Hessen, 64283, GERMANY
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Melzi P, Tolosana R, Cecconi A, Sanz-Garcia A, Ortega GJ, Jimenez-Borreguero LJ, Vera-Rodriguez R. Analyzing artificial intelligence systems for the prediction of atrial fibrillation from sinus-rhythm ECGs including demographics and feature visualization. Sci Rep 2021; 11:22786. [PMID: 34815461 PMCID: PMC8610971 DOI: 10.1038/s41598-021-02179-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 11/10/2021] [Indexed: 11/26/2022] Open
Abstract
Atrial fibrillation (AF) is an abnormal heart rhythm, asymptomatic in many cases, that causes several health problems and mortality in population. This retrospective study evaluates the ability of different AI-based models to predict future episodes of AF from electrocardiograms (ECGs) recorded during normal sinus rhythm. Patients are divided into two classes according to AF occurrence or sinus rhythm permanence along their several ECGs registry. In the constrained scenario of balancing the age distributions between classes, our best AI model predicts future episodes of AF with area under the curve (AUC) 0.79 (0.72–0.86). Multiple scenarios and age-sex-specific groups of patients are considered, achieving best performance of prediction for males older than 70 years. These results point out the importance of considering different demographic groups in the analysis of AF prediction, showing considerable performance gaps among them. In addition to the demographic analysis, we apply feature visualization techniques to identify the most important portions of the ECG signals in the task of AF prediction, improving this way the interpretability and understanding of the AI models. These results and the simplicity of recording ECGs during check-ups add feasibility to clinical applications of AI-based models.
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Affiliation(s)
- Pietro Melzi
- Biometrics and Data Pattern Analytics Lab, Escuela Politecnica Superior, Universidad Autonoma de Madrid, Calle Francisco Tomas Y Valiente, 11, C-235, 28049, Madrid, Spain
| | - Ruben Tolosana
- Biometrics and Data Pattern Analytics Lab, Escuela Politecnica Superior, Universidad Autonoma de Madrid, Calle Francisco Tomas Y Valiente, 11, C-235, 28049, Madrid, Spain.
| | - Alberto Cecconi
- Instituto de Investigacion Sanitaria del Hospital Universitario de La Princesa, Madrid, Spain
| | - Ancor Sanz-Garcia
- Instituto de Investigacion Sanitaria del Hospital Universitario de La Princesa, Madrid, Spain
| | - Guillermo J Ortega
- Instituto de Investigacion Sanitaria del Hospital Universitario de La Princesa, Madrid, Spain.,Science and Technology Department, National University of Quilmes, Bernal, Argentina.,Consejo Nacional de Investigaciones Cientificas y Tecnicas, CONICET, Buenos Aires, Argentina
| | - Luis Jesus Jimenez-Borreguero
- Instituto de Investigacion Sanitaria del Hospital Universitario de La Princesa, Madrid, Spain.,CIBERCV, Centro de Investigacion Biomedica en Red Enfermedades Cardiovasculares, Madrid, Spain
| | - Ruben Vera-Rodriguez
- Biometrics and Data Pattern Analytics Lab, Escuela Politecnica Superior, Universidad Autonoma de Madrid, Calle Francisco Tomas Y Valiente, 11, C-235, 28049, Madrid, Spain
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7
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Giraldo-Guzmán J, Kotas M, Castells F, Contreras-Ortiz SH, Urina-Triana M. Estimation of PQ distance dispersion for atrial fibrillation detection. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2021; 208:106167. [PMID: 34091101 DOI: 10.1016/j.cmpb.2021.106167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2020] [Accepted: 05/03/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND AND OBJECTIVE Atrial fibrillation (AF) is the most common cardiac arrhythmia in the world. It is associated with significantly increased morbidity and mortality. Diagnosis of the disease can be based on the analysis of the electrical atrial activity, on quantification of the heart rate irregularity or on a mixture of the both approaches. Since the amplitude of the atrial waves is small, their analysis can lead to false results. On the other hand, the heart rate based analysis usually leads to many unnecessary warnings. Therefore, our goal is to develop a new method for effective AF detection based on the analysis of the electrical atrial waves. METHODS The proposed method employs the fact that there is a lack of repeatable P waves preceding QRS complexes during AF. We apply the operation of spatio-temporal filtering (STF) to magnify and detect the prominent spatio-temporal patterns (STP) within the P waves in multi-channel ECG recordings. Later we measure their distances (PQ) to the succeeding QRS complexes, and we estimate dispersion of the obtained PQ series. For signals with normal sinus rhythm, this dispersion is usually very low, and contrary, for AF it is much raised. This allows for effective discrimination of this cardiologic disorder. RESULTS Tested on an ECG database consisting of AF cases, normal rhythm cases and cases with normal rhythm restored by the use of cardioversion, the method proposed allowed for AF detection with the accuracy of 98.75% on the basis of both 8-channel and 2-channel signals of 12 s length. When the signals length was decreased to 6 s, the accuracy varied in the range of 95%-97.5% depending on the number of channels and the dispersion measure applied. CONCLUSIONS Our approach allows for high accuracy of atrial fibrillation detection using the analysis of electrical atrial activity. The method can be applied to an early detection of the desease and can advantageously be used to decrease the number of false warnings in systems based on the analysis of the heart rate.
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Affiliation(s)
- Jader Giraldo-Guzmán
- Faculty of engineering, Universidad Tecnológica de Bolívar Km 1 Via Turbaco, Cartagena de Indias, 130010, Colombia, USA.
| | - Marian Kotas
- Department of Cybernetics, Nanotechnology and Data Processing, Silesian University of Technology, Akademicka 16, Gliwice, 44-100, Poland
| | | | - Sonia H Contreras-Ortiz
- Faculty of engineering, Universidad Tecnológica de Bolívar Km 1 Via Turbaco, Cartagena de Indias, 130010, Colombia, USA
| | - Miguel Urina-Triana
- Faculty of health sciences, Universidad Simón Bolívar Carrera 54 # 64 - 222, Barranquilla,1086, Colombia, USA
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AF episodes recognition using optimized time-frequency features and cost-sensitive SVM. Phys Eng Sci Med 2021; 44:613-624. [PMID: 34142316 DOI: 10.1007/s13246-021-01005-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Accepted: 04/24/2021] [Indexed: 10/21/2022]
Abstract
Although atrial fibrillation (AF) Arrhythmia is highly prevalent within a wide range of populations with major associated risks and due to its episodic occurrence, its recognition remains a challenge for doctors. This paper aims to present and experimentally validate a new efficient approach for the detection and classification of this cardiac anomaly using multiple Electrocardiogram (ECG) signals. This work consists of applying Stockwell transform (ST) with compact support kernel (ST-CSK) for ECG time-frequency analysis. The estimation of the atrial activity (AA) is then achieved after analyzing P-waves of the ECG signals for each heartbeat. ECG signals segmentation allows characterizing the AA by making use of its (t, f) flatness, (t, f) flux, energy concentration and heart rate variability. The features matrix is employed as an input of the support vector machines (SVM) working in binary and asymmetrical mode with an embedded reject option. The proposed algorithm is trained and then tested using different ECG sources namely two databases provided by PhysionNet (MIT-BIH Arrhythmia, MIT-BIH Atrial Fibrillation) and recorded ECG signals using MySignals HW development platform with raspberry Pi 3 model B[Formula: see text]. The used method has achieved [Formula: see text] and [Formula: see text] as sensitivity and specificity, respectively. The obtained results confirm that the proposed approach represents a promising tool for Atrial Fibrillation Episodes (AFE) recognition with significant separability between Normal atrial activity and atrial activity with AF even under real and clinical conditions.
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Wang H, Dai H, Zhou Y, Zhou B, Lu P, Zhang H, Wang Z. An effective feature extraction method based on GDS for atrial fibrillation detection. J Biomed Inform 2021; 119:103819. [PMID: 34029749 DOI: 10.1016/j.jbi.2021.103819] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2021] [Revised: 04/29/2021] [Accepted: 05/16/2021] [Indexed: 10/21/2022]
Abstract
Atrial fibrillation (AF) is a common and extremely harmful arrhythmia disease. Automatic detection of AF based on ECG helps accurate and timely detection of the condition. However, the existing AF detection methods are mostly based on complex signal transformation or precise waveform localization. This is a big challenge for complex, variable, and susceptible ECG signals. Therefore, we propose a simple feature extraction method based on gradient set (GDS) for AF detection. The method first calculates the GDS of the ECG segment and then calculates the statistical distribution feature and the information quantity feature of the GDS as the input of the classifier. Experiments on four databases include 146 subjects show that the feature extraction method for detecting AF proposed in this paper has the characteristics of simple calculation, noise tolerance, and high adaptability to all kinds of classifiers, and got the best performance on the DNN classifier we designed. Therefore, it is a good choice for feature extraction in AF detection.
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Affiliation(s)
- Haiyan Wang
- State Key Laboratory of Mathematical Engineering and Advanced Computing, Zhengzhou 450003, China; Simulation Experiment Centre, Zhengzhou University of Aeronautics, Zhengzhou 450046, China; Collaborative Innovation Centre for Internet Healthcare, Zhengzhou University, Zhengzhou 450052, China
| | - Honghua Dai
- Collaborative Innovation Centre for Internet Healthcare, Zhengzhou University, Zhengzhou 450052, China; Institute of Intelligent Systems, Deakin University, Burwood, VIC 3125, Australia
| | - Yanjie Zhou
- School of Management Engineering, Zhengzhou University, Zhengzhou 450001, China.
| | - Bing Zhou
- Collaborative Innovation Centre for Internet Healthcare, Zhengzhou University, Zhengzhou 450052, China; School of Information Engineering, Zhengzhou University, Zhengzhou 450001, China
| | - Peng Lu
- Collaborative Innovation Centre for Internet Healthcare, Zhengzhou University, Zhengzhou 450052, China; School of Electrical Engineering, Zhengzhou University, Zhengzhou 450001, China
| | - Hongpo Zhang
- State Key Laboratory of Mathematical Engineering and Advanced Computing, Zhengzhou 450003, China; Collaborative Innovation Centre for Internet Healthcare, Zhengzhou University, Zhengzhou 450052, China
| | - Zongmin Wang
- State Key Laboratory of Mathematical Engineering and Advanced Computing, Zhengzhou 450003, China; Collaborative Innovation Centre for Internet Healthcare, Zhengzhou University, Zhengzhou 450052, China
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Bashar SK, Hossain MB, Ding E, Walkey AJ, McManus DD, Chon KH. Atrial Fibrillation Detection During Sepsis: Study on MIMIC III ICU Data. IEEE J Biomed Health Inform 2020; 24:3124-3135. [PMID: 32750900 PMCID: PMC7670858 DOI: 10.1109/jbhi.2020.2995139] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Sepsis is defined by life-threatening organ dysfunction during infection and is one of the leading causes of critical illness. During sepsis, there is high risk that new-onset of atrial fibrillation (AF) can occur, which is associated with significant morbidity and mortality. As a result, computer aided automated and reliable detection of new-onset AF during sepsis is crucial, especially for the critically ill patients in the intensive care unit (ICU). In this paper, a novel automated and robust two-step algorithm to detect AF from ICU patients using electrocardiogram (ECG) signals is presented. First, several statistical parameters including root mean square of successive differences, Shannon entropy, and sample entropy were calculated from the heart rate for the screening of possible AF segments. Next, Poincaré plot-based features along with P-wave characteristics were used to reduce false positive detection of AF, caused by the premature atrial and ventricular beats. A subset of the Medical Information Mart for Intensive Care (MIMIC) III database containing 198 subjects was used in this study. During the training and validation phases, both the simple thresholding as well as machine learning classifiers achieved very high segment-wise AF classification performance. Finally, we tested the performance of our proposed algorithm using two independent test data sets and compared the performance with two state-of-the-art methods. The algorithm achieved an overall 100% sensitivity, 98% specificity, 98.99% accuracy, 98% positive predictive value, and 100% negative predictive value on the subject-wise AF detection, thus showing the efficacy of our proposed algorithm in critically ill sepsis patients. The annotations of the data have been made publicly available for other investigators.
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12
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Wen X, Huang Y, Wu X, Zhang B. A Feasible Feature Extraction Method for Atrial Fibrillation Detection From BCG. IEEE J Biomed Health Inform 2020; 24:1093-1103. [DOI: 10.1109/jbhi.2019.2927165] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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13
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He R, Wang K, Zhao N, Liu Y, Yuan Y, Li Q, Zhang H. Automatic Detection of Atrial Fibrillation Based on Continuous Wavelet Transform and 2D Convolutional Neural Networks. Front Physiol 2018; 9:1206. [PMID: 30214416 PMCID: PMC6125647 DOI: 10.3389/fphys.2018.01206] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2018] [Accepted: 08/10/2018] [Indexed: 01/22/2023] Open
Abstract
Atrial fibrillation (AF) is the most common cardiac arrhythmias causing morbidity and mortality. AF may appear as episodes of very short (i.e., proximal AF) or sustained duration (i.e., persistent AF), either form of which causes irregular ventricular excitations that affect the global function of the heart. It is an unmet challenge for early and automatic detection of AF, limiting efficient treatment strategies for AF. In this study, we developed a new method based on continuous wavelet transform and 2D convolutional neural networks (CNNs) to detect AF episodes. The proposed method analyzed the time-frequency features of the electrocardiogram (ECG), thus being different to conventional AF detecting methods that implement isolating atrial or ventricular activities. Then a 2D CNN was trained to improve AF detection performance. The MIT-BIH Atrial Fibrillation Database was used for evaluating the algorithm. The efficacy of the proposed method was compared with those of some existing methods, most of which implemented the same dataset. The newly developed algorithm using CNNs achieved 99.41, 98.91, 99.39, and 99.23% for the sensitivity, specificity, positive predictive value, and overall accuracy (ACC) respectively. As the proposed algorithm targets the time-frequency feature of ECG signals rather than isolated atrial or ventricular activity, it has the ability to detect AF episodes for using just five beats, suggesting practical applications in the future.
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Affiliation(s)
- Runnan He
- School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China
| | - Kuanquan Wang
- School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China
| | - Na Zhao
- School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China
| | - Yang Liu
- School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China
| | - Yongfeng Yuan
- School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China
| | - Qince Li
- School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China
| | - Henggui Zhang
- School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China
- School of Physics and Astronomy, The University of Manchester, Manchester, United Kingdom
- Space Institute of Southern China, Shenzhen, China
- Key Laboratory of Medical Electrophysiology, Ministry of Education, Collaborative Innovation Center for Prevention and Treatment of Cardiovascular Disease, Institute of Cardiovascular Research, Southwest Medical University, Luzhou, China
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14
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Validation of an algorithm to reveal the U wave in atrial fibrillation. Sci Rep 2018; 8:11946. [PMID: 30093703 PMCID: PMC6085295 DOI: 10.1038/s41598-018-30493-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2018] [Accepted: 07/12/2018] [Indexed: 11/16/2022] Open
Abstract
Major cardiac organisations recommend U wave abnormalities should be reported during ECG interpretation. However, U waves cannot be measured in patients with atrial fibrillation (AF) due to the obscuring fibrillatory wave. The aim was to validate a U wave measurement algorithm for AF patients. Multi-beat averaging was applied to ECGs of 25 patients during paroxysms of AF and the presence of U waves compared to those from the same patients during sinus rhythm (SR). In a further database of 10 long-term AF recordings, the number of beats for effective U wave extraction by the algorithm was calculated. U waves were revealed in all AF recordings and there was no significant difference between the presence of U waves in AF and SR (p = 0.88). U wave amplitude was significantly increased in AF (mean (s.d.) amplitude 55 (39) AF vs 37 (28) μV SR, p = 0.005). The presence of U waves could easily be discerned when as few as 10 beats were used in the algorithm. The study demonstrates the validity of the algorithm to reveal U waves in AF recordings. The algorithm offers the potential to detect U wave abnormalities in patients with AF.
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Bruun IH, Hissabu SMS, Poulsen ES, Puthusserypady S. Automatic Atrial Fibrillation detection: A novel approach using discrete wavelet transform and heart rate variability. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2017; 2017:3981-3984. [PMID: 29060769 DOI: 10.1109/embc.2017.8037728] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Early detection of Atrial Fibrillation (AF) is crucial in order to prevent acute and chronic cardiac rhythm disorders. In this study, a novel method for robust automatic AF detection (AAFD) is proposed by combining atrial activity (AA) and heart rate variability (HRV), which could potentially be used as a screening tool for patients suspected to have AF. The method includes an automatic peak detection prior to the feature extraction, as well as a noise cancellation technique followed by a bagged tree classification. Simulation studies on the MIT-BIH Atrial Fibrillation database was performed to evaluate the performance of the proposed method. Results from these extensive studies showed very promising results, with an average sensitivity of 96.51%, a specificity of 99.19%, and an overall accuracy of 98.22%.
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16
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Asgari S, Mehrnia A, Moussavi M. Automatic detection of atrial fibrillation using stationary wavelet transform and support vector machine. Comput Biol Med 2015; 60:132-42. [DOI: 10.1016/j.compbiomed.2015.03.005] [Citation(s) in RCA: 138] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2014] [Revised: 03/03/2015] [Accepted: 03/06/2015] [Indexed: 11/28/2022]
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17
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Low-complexity detection of atrial fibrillation in continuous long-term monitoring. Comput Biol Med 2015; 65:184-91. [PMID: 25666902 DOI: 10.1016/j.compbiomed.2015.01.019] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2014] [Revised: 01/16/2015] [Accepted: 01/21/2015] [Indexed: 11/20/2022]
Abstract
This study describes an atrial fibrillation (AF) detector whose structure is well-adapted both for detection of subclinical AF episodes and for implementation in a battery-powered device for use in continuous long-term monitoring applications. A key aspect for achieving these two properties is the use of an 8-beat sliding window, which thus is much shorter than the 128-beat window used in most existing AF detectors. The building blocks of the proposed detector include ectopic beat filtering, bigeminal suppression, characterization of RR interval irregularity, and signal fusion. With one design parameter, the performance can be tuned to put more emphasis on avoiding false alarms due to non-AF arrhythmias or more emphasis on detecting brief AF episodes. Despite its very simple structure, the results show that the detector performs better on the MIT-BIH Atrial Fibrillation database than do existing detectors, with high sensitivity and specificity (97.1% and 98.3%, respectively). The detector can be implemented with just a few arithmetical operations and does not require a large memory buffer thanks to the short window.
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18
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Detection of occult paroxysmal atrial fibrillation. Med Biol Eng Comput 2014; 53:287-97. [PMID: 25502852 DOI: 10.1007/s11517-014-1234-y] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2014] [Accepted: 12/08/2014] [Indexed: 10/24/2022]
Abstract
This work introduces a novel approach to the detection of brief episodes of paroxysmal atrial fibrillation (PAF). The proposed detector is based on four parameters which characterize RR interval irregularity, P-wave absence, f-wave presence, and noise level, of which the latter three are determined from a signal produced by an echo state network. The parameters are used for fuzzy logic classification where the decisions involve information on prevailing signal quality; no training is required. The performance is evaluated on a large set of test signals with brief episodes of PAF. The results show that episodes with as few as five beats can be reliably detected with an accuracy of 0.88, compared to 0.82 for a detector based on rhythm information only (the coefficient of sample entropy); this difference in accuracy increases when atrial premature beats are present. The results also show that the performance remains essentially unchanged at noise levels up to [Formula: see text] RMS. It is concluded that the combination of information on ventricular activity, atrial activity, and noise leads to substantial improvement when detecting brief episodes of PAF.
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Edward Jero S, Ramu P, Ramakrishnan S. Discrete wavelet transform and singular value decomposition based ECG steganography for secured patient information transmission. J Med Syst 2014; 38:132. [PMID: 25187409 DOI: 10.1007/s10916-014-0132-z] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2014] [Accepted: 08/21/2014] [Indexed: 11/30/2022]
Abstract
ECG Steganography provides secured transmission of secret information such as patient personal information through ECG signals. This paper proposes an approach that uses discrete wavelet transform to decompose signals and singular value decomposition (SVD) to embed the secret information into the decomposed ECG signal. The novelty of the proposed method is to embed the watermark using SVD into the two dimensional (2D) ECG image. The embedding of secret information in a selected sub band of the decomposed ECG is achieved by replacing the singular values of the decomposed cover image by the singular values of the secret data. The performance assessment of the proposed approach allows understanding the suitable sub-band to hide secret data and the signal degradation that will affect diagnosability. Performance is measured using metrics like Kullback-Leibler divergence (KL), percentage residual difference (PRD), peak signal to noise ratio (PSNR) and bit error rate (BER). A dynamic location selection approach for embedding the singular values is also discussed. The proposed approach is demonstrated on a MIT-BIH database and the observations validate that HH is the ideal sub-band to hide data. It is also observed that the signal degradation (less than 0.6%) is very less in the proposed approach even with the secret data being as large as the sub band size. So, it does not affect the diagnosability and is reliable to transmit patient information.
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Affiliation(s)
- S Edward Jero
- Department of Engineering Design, Indian Institute of Technology Madras, Chennai, India,
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20
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Ladavich S, Ghoraani B. Developing an atrial activity-based algorithm for detection of atrial fibrillation. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2014; 2014:54-57. [PMID: 25569895 DOI: 10.1109/embc.2014.6943527] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
In this study we propose a novel atrial activity-based method for atrial fibrillation (AF) identification that detects the absence of normal sinus rhythm (SR) P-waves from the surface ECG. The proposed algorithm extracts nine features from P-waves during SR and develops a statistical model to describe the distribution of the features. The Expectation-Maximization algorithm is applied to a training set to create a multivariate Gaussian Mixture Model (GMM) of the feature space. This model is used to identify P-wave absence (PWA) and, in turn, AF. An optional post-processing stage, which takes a majority vote of successive outputs, is applied to improve classier performance. The algorithm was tested on 20 records in the MIT-BIH Atrial Fibrillation Database. Classification combining seven beats showed a sensitivity of 99.28%, a specificity of 90.21%. The presented algorithm has a classification performance comparable to current Heartrate-based algorithms yet is rate-independent and capable of making an AF determination in a few beats.
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21
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Watanabe H, Kawarasaki M, Sato A, Yoshida K. Wearable ECG Monitoring and Alerting System Associated with Smartphone. INTERNATIONAL JOURNAL OF E-HEALTH AND MEDICAL COMMUNICATIONS 2013. [DOI: 10.4018/ijehmc.2013100101] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Heart disease has the second high mortality rate behind cancer in Japan, and requires quick treatment. To take a part in emerging mHealth, the authors developed a wearable electrocardiographic (ECG) monitoring and alerting system “iHeart”. iHeart continuously monitors patient's ECG in his/her daily activities and issues an alert to the patient as well as surrounding people if it detects abnormal heart behaviour. iHeart consists of a wireless ECG sensor and a smartphone to achieve light-weighted, low-cost system that does not degrade the patient's Quality of Life. In parallel, the authors developed ECG analysis algorithm to detect R-wave as well as arrhythmia, and implemented these algorithms in wireless ECG sensor rather than in smartphone to save power consumption of ECG sensor caused by radio communication. The authors proof the practicality and usefulness of our system in clinical experiment. This paper describes the implementation of iHeart, evaluation experiment, and future requirements of the system.
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Affiliation(s)
- Hyuma Watanabe
- Graduate School of Library, Information and Media Studies, University of Tsukuba, Tsukuba, Japan
| | - Masatoshi Kawarasaki
- Faculty of Library, Information and Media Studies, University of Tsukuba, Tsukuba, Japan
| | - Akira Sato
- Faculty of Medicine, University of Tsukuba, Tsukuba, Japan
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22
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Betancourt JP, Fatichah C, Tangel ML, Yan F, Sanchez JAG, Dong FY, Hirota K. Similarity-Based Fuzzy Classification of ECG and Capnogram Signals. JOURNAL OF ADVANCED COMPUTATIONAL INTELLIGENCE AND INTELLIGENT INFORMATICS 2013. [DOI: 10.20965/jaciii.2013.p0302] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
A method for ECG and capnogram signals classification is proposed based on fuzzy similarity evaluation, where shape exchange algorithm and fuzzy inference are combined. It aims to be applied to quasi-periodic biomedical signals and has low computational cost. On the experiments for atrial fibrillation (AF) classification using two databases: MIT-BIH AF and MITBIH Normal Sinus Rhythm, values of 100%, 94.4%, and 97.6% for sensitivity, specificity, and accuracy respectively, and execution time of 0.6 s are obtained. The proposal is capable of been extended to classify different diseases, from ECG and capnogram signals, such as: Brugada syndrome, AV block, hypoventilation, and asthma among others to be implemented in low computational resources devices.
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