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Espinoso A, Leguia MG, Rummel C, Schindler K, Andrzejak RG. The part and the whole: how single nodes contribute to large-scale phase-locking in functional EEG networks. Clin Neurophysiol 2024; 168:178-192. [PMID: 39406673 DOI: 10.1016/j.clinph.2024.09.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Revised: 06/12/2024] [Accepted: 09/13/2024] [Indexed: 12/11/2024]
Abstract
OBJECTIVE The application of signal analysis techniques to electroencephalographic (EEG) recordings from epilepsy patients shows that epilepsy involves not only altered neuronal synchronization but also the reorganization of functional EEG networks. This study aims to assess the large-scale phase-locking of such functional networks and how individual network nodes contribute to this collective dynamics. METHODS We analyze the EEG recorded before, during and after seizures from sixteen patients with pharmacoresistant focal-onset epilepsy. The data is filtered to low (4-30 Hz) and high (80-150 Hz) frequencies. We define the multivariate phase-locking measure and the univariate phase-locking contribution measure. Surrogate signals are used to estimate baseline results expected under the null hypothesis that the EEG is a correlated linear stochastic process. RESULTS On average, nodes from inside and outside the seizure onset zone (SOZ) increase and decrease, respectively, the large-scale phase-locking. This difference becomes most evident in a joint analysis of low and high frequencies. CONCLUSIONS Nodes inside and outside the SOZ play opposite roles for the large-scale phase-locking in functional EEG network in epilepsy patients. SIGNIFICANCE The application of the phase-locking contribution measure to EEG recordings from epilepsy patients can potentially help in localizing the SOZ.
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Affiliation(s)
- Anaïs Espinoso
- Department of Information and Communications Technologies, Universitat Pompeu Fabra, Carrer Roc Boronat 138, Barcelona 08018, Catalonia, Spain.
| | - Marc G Leguia
- Department of Information and Communications Technologies, Universitat Pompeu Fabra, Carrer Roc Boronat 138, Barcelona 08018, Catalonia, Spain
| | - Christian Rummel
- Support Center for Advanced Neuroimaging, University Institute for Diagnostic and Interventional Neuroradiology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland; European Campus Rottal-Inn, Technische Hochschule Deggendorf, Max-Breiherr-Strasse 32, D-84347 Pfarrkirchen, Germany
| | - Kaspar Schindler
- Sleep-Wake-Epilepsy-Center, Department of Neurology, Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland
| | - Ralph G Andrzejak
- Department of Information and Communications Technologies, Universitat Pompeu Fabra, Carrer Roc Boronat 138, Barcelona 08018, Catalonia, Spain
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2
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Liu X, Han J, Zhang X, Zhou Q, Huang Z, Wang Y, Zhang J, Lin Y. Dynamic evolution of frontal-temporal network connectivity in temporal lobe epilepsy: A magnetoencephalography study. Hum Brain Mapp 2024; 45:e70033. [PMID: 39319686 PMCID: PMC11423264 DOI: 10.1002/hbm.70033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Revised: 09/06/2024] [Accepted: 09/11/2024] [Indexed: 09/26/2024] Open
Abstract
Temporal lobe epilepsy (TLE) frequently involves an intricate, extensive epileptic frontal-temporal network. This study aimed to investigate the interactions between temporal and frontal regions and the dynamic patterns of the frontal-temporal network in TLE patients with different disease durations. The magnetoencephalography data of 36 postoperative seizure-free patients with long-term follow-up of at least 1 year, and 21 age- and sex-matched healthy subjects were included in this study. Patients were initially divided into LONG-TERM (n = 18, DURATION >10 years) and SHORT-TERM (n = 18, DURATION ≤10 years) groups based on 10-year disease duration. For reliability, supplementary analyses were conducted with alternative cutoffs, creating three groups: 0 < DURATION ≤7 years (n = 11), 7 < DURATION ≤14 years (n = 11), and DURATION >14 years (n = 14). This study examined the intraregional phase-amplitude coupling (PAC) between theta phase and alpha amplitude across the whole brain. The interregional directed phase transfer entropy (dPTE) between frontal and temporal regions in the alpha and theta bands, and the interregional cross-frequency directionality (CFD) between temporal and frontal regions from the theta phase to the alpha amplitude were further computed and compared among groups. Partial correlation analysis was conducted to investigate correlations between intraregional PAC, interregional dPTE connectivity, interregional CFD, and disease duration. Whole-brain intraregional PAC analyses revealed enhanced theta phase-alpha amplitude coupling within the ipsilateral temporal and frontal regions in TLE patients, and the ipsilateral temporal PAC was positively correlated with disease duration (r = 0.38, p <.05). Interregional dPTE analyses demonstrated a gradual increase in frontal-to-temporal connectivity within the alpha band, while the direction of theta-band connectivity reversed from frontal-to-temporal to temporal-to-frontal as the disease duration increased. Interregional CFD analyses revealed that the inhibitory effect of frontal regions on temporal regions gradually increased with prolonged disease duration (r = -0.36, p <.05). This study clarified the intrinsic reciprocal connectivity between temporal and frontal regions with TLE duration. We propose a dynamically reorganized triple-stage network that transitions from balanced networks to constrained networks and further develops into imbalanced networks as the disease duration increases.
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Affiliation(s)
- Xinyan Liu
- School of Biological Science and Medical EngineeringBeihang UniversityBeijingChina
- Beijing Advanced Innovation Center for Big Data‐Based Precision MedicineBeihang UniversityBeijingChina
- Beijing Advanced Innovation Centre for Biomedical EngineeringBeihang UniversityBeijingChina
| | - Jiaqi Han
- Department of Neurology, Xuanwu HospitalCapital Medical UniversityBeijingChina
| | - Xiating Zhang
- Department of Neurology, Xuanwu HospitalCapital Medical UniversityBeijingChina
- Department of Neurologythe First Hospital of Hebei Medical UniversityShijiazhuangHebeiChina
| | - Qilin Zhou
- Department of Neurology, Xuanwu HospitalCapital Medical UniversityBeijingChina
| | - Zhaoyang Huang
- Department of Neurology, Xuanwu HospitalCapital Medical UniversityBeijingChina
- Department of Neurologythe First Hospital of Hebei Medical UniversityShijiazhuangHebeiChina
| | - Yuping Wang
- Department of Neurology, Xuanwu HospitalCapital Medical UniversityBeijingChina
- Department of Neurologythe First Hospital of Hebei Medical UniversityShijiazhuangHebeiChina
- Beijing Key Laboratory of NeuromodulationXuanwu Hospital, Capital Medical UniversityBeijingChina
| | - Jicong Zhang
- School of Biological Science and Medical EngineeringBeihang UniversityBeijingChina
- Beijing Advanced Innovation Center for Big Data‐Based Precision MedicineBeihang UniversityBeijingChina
- Beijing Advanced Innovation Centre for Biomedical EngineeringBeihang UniversityBeijingChina
- Hefei Innovation Research InstituteBeihang UniversityBeijingChina
| | - Yicong Lin
- Department of Neurology, Xuanwu HospitalCapital Medical UniversityBeijingChina
- Department of Neurologythe First Hospital of Hebei Medical UniversityShijiazhuangHebeiChina
- Beijing Key Laboratory of NeuromodulationXuanwu Hospital, Capital Medical UniversityBeijingChina
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Karimi-Rouzbahani H, McGonigal A. Generalisability of epileptiform patterns across time and patients. Sci Rep 2024; 14:6293. [PMID: 38491096 PMCID: PMC10942983 DOI: 10.1038/s41598-024-56990-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2024] [Accepted: 03/13/2024] [Indexed: 03/18/2024] Open
Abstract
The complexity of localising the epileptogenic zone (EZ) contributes to surgical resection failures in achieving seizure freedom. The distinct patterns of epileptiform activity during interictal and ictal phases, varying across patients, often lead to suboptimal localisation using electroencephalography (EEG) features. We posed two key questions: whether neural signals reflecting epileptogenicity generalise from interictal to ictal time windows within each patient, and whether epileptiform patterns generalise across patients. Utilising an intracranial EEG dataset from 55 patients, we extracted a large battery of simple to complex features from stereo-EEG (SEEG) and electrocorticographic (ECoG) neural signals during interictal and ictal windows. Our features (n = 34) quantified many aspects of the signals including statistical moments, complexities, frequency-domain and cross-channel network attributes. Decision tree classifiers were then trained and tested on distinct time windows and patients to evaluate the generalisability of epileptogenic patterns across time and patients, respectively. Evidence strongly supported generalisability from interictal to ictal time windows across patients, particularly in signal power and high-frequency network-based features. Consistent patterns of epileptogenicity were observed across time windows within most patients, and signal features of epileptogenic regions generalised across patients, with higher generalisability in the ictal window. Signal complexity features were particularly contributory in cross-patient generalisation across patients. These findings offer insights into generalisable features of epileptic neural activity across time and patients, with implications for future automated approaches to supplement other EZ localisation methods.
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Affiliation(s)
- Hamid Karimi-Rouzbahani
- Neurosciences Centre, Mater Hospital, South Brisbane, 4101, Australia.
- Mater Research Institute, University of Queensland, South Brisbane, 4101, Australia.
- Queensland Brain Institute, University of Queensland, St Lucia, 4072, Australia.
| | - Aileen McGonigal
- Neurosciences Centre, Mater Hospital, South Brisbane, 4101, Australia
- Mater Research Institute, University of Queensland, South Brisbane, 4101, Australia
- Queensland Brain Institute, University of Queensland, St Lucia, 4072, Australia
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Deep-EEG: An Optimized and Robust Framework and Method for EEG-Based Diagnosis of Epileptic Seizure. Diagnostics (Basel) 2023; 13:diagnostics13040773. [PMID: 36832260 PMCID: PMC9954819 DOI: 10.3390/diagnostics13040773] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Revised: 01/25/2023] [Accepted: 02/08/2023] [Indexed: 02/22/2023] Open
Abstract
Detecting brain disorders using deep learning methods has received much hype during the last few years. Increased depth leads to more computational efficiency, accuracy, and optimization and less loss. Epilepsy is one of the most common chronic neurological disorders characterized by repeated seizures. We have developed a deep learning model using Deep convolutional Autoencoder-Bidirectional Long Short Memory for Epileptic Seizure Detection (DCAE-ESD-Bi-LSTM) for automatic detection of seizures using EEG data. The significant feature of our model is that it has contributed to the accurate and optimized diagnosis of epilepsy in ideal and real-life situations. The results on the benchmark (CHB-MIT) dataset and the dataset collected by the authors show the relevance of the proposed approach over the baseline deep learning techniques by achieving an accuracy of 99.8%, classification accuracy of 99.7%, sensitivity of 99.8%, specificity and precision of 99.9% and F1 score of 99.6%. Our approach can contribute to the accurate and optimized detection of seizures while scaling the design rules and increasing performance without changing the network's depth.
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Taylor PN, Papasavvas CA, Owen TW, Schroeder GM, Hutchings FE, Chowdhury FA, Diehl B, Duncan JS, McEvoy AW, Miserocchi A, de Tisi J, Vos SB, Walker MC, Wang Y. Normative brain mapping of interictal intracranial EEG to localize epileptogenic tissue. Brain 2022; 145:939-949. [PMID: 35075485 PMCID: PMC9050535 DOI: 10.1093/brain/awab380] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Revised: 08/19/2021] [Accepted: 09/03/2021] [Indexed: 11/14/2022] Open
Abstract
The identification of abnormal electrographic activity is important in a wide range of neurological disorders, including epilepsy for localizing epileptogenic tissue. However, this identification may be challenging during non-seizure (interictal) periods, especially if abnormalities are subtle compared to the repertoire of possible healthy brain dynamics. Here, we investigate if such interictal abnormalities become more salient by quantitatively accounting for the range of healthy brain dynamics in a location-specific manner. To this end, we constructed a normative map of brain dynamics, in terms of relative band power, from interictal intracranial recordings from 234 participants (21 598 electrode contacts). We then compared interictal recordings from 62 patients with epilepsy to the normative map to identify abnormal regions. We proposed that if the most abnormal regions were spared by surgery, then patients would be more likely to experience continued seizures postoperatively. We first confirmed that the spatial variations of band power in the normative map across brain regions were consistent with healthy variations reported in the literature. Second, when accounting for the normative variations, regions that were spared by surgery were more abnormal than those resected only in patients with persistent postoperative seizures (t = -3.6, P = 0.0003), confirming our hypothesis. Third, we found that this effect discriminated patient outcomes (area under curve 0.75 P = 0.0003). Normative mapping is a well-established practice in neuroscientific research. Our study suggests that this approach is feasible to detect interictal abnormalities in intracranial EEG, and of potential clinical value to identify pathological tissue in epilepsy. Finally, we make our normative intracranial map publicly available to facilitate future investigations in epilepsy and beyond.
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Affiliation(s)
- Peter N Taylor
- CNNP Laboratory (www.cnnp-lab.com), Interdisciplinary Computing and Complex BioSystems Group, School of Computing, Newcastle Helix, Newcastle University, Newcastle-upon-Tyne, NE4 5TG, UK
- UCL Queen Square Institute of Neurology and National Hospital for Neurology and Neurosurgery (NHNN), Queen Square, London WC1N 3BG, UK
| | - Christoforos A Papasavvas
- CNNP Laboratory (www.cnnp-lab.com), Interdisciplinary Computing and Complex BioSystems Group, School of Computing, Newcastle Helix, Newcastle University, Newcastle-upon-Tyne, NE4 5TG, UK
| | - Thomas W Owen
- CNNP Laboratory (www.cnnp-lab.com), Interdisciplinary Computing and Complex BioSystems Group, School of Computing, Newcastle Helix, Newcastle University, Newcastle-upon-Tyne, NE4 5TG, UK
| | - Gabrielle M Schroeder
- CNNP Laboratory (www.cnnp-lab.com), Interdisciplinary Computing and Complex BioSystems Group, School of Computing, Newcastle Helix, Newcastle University, Newcastle-upon-Tyne, NE4 5TG, UK
| | - Frances E Hutchings
- CNNP Laboratory (www.cnnp-lab.com), Interdisciplinary Computing and Complex BioSystems Group, School of Computing, Newcastle Helix, Newcastle University, Newcastle-upon-Tyne, NE4 5TG, UK
| | - Fahmida A Chowdhury
- UCL Queen Square Institute of Neurology and National Hospital for Neurology and Neurosurgery (NHNN), Queen Square, London WC1N 3BG, UK
| | - Beate Diehl
- UCL Queen Square Institute of Neurology and National Hospital for Neurology and Neurosurgery (NHNN), Queen Square, London WC1N 3BG, UK
| | - John S Duncan
- UCL Queen Square Institute of Neurology and National Hospital for Neurology and Neurosurgery (NHNN), Queen Square, London WC1N 3BG, UK
| | - Andrew W McEvoy
- UCL Queen Square Institute of Neurology and National Hospital for Neurology and Neurosurgery (NHNN), Queen Square, London WC1N 3BG, UK
| | - Anna Miserocchi
- UCL Queen Square Institute of Neurology and National Hospital for Neurology and Neurosurgery (NHNN), Queen Square, London WC1N 3BG, UK
| | - Jane de Tisi
- UCL Queen Square Institute of Neurology and National Hospital for Neurology and Neurosurgery (NHNN), Queen Square, London WC1N 3BG, UK
| | - Sjoerd B Vos
- UCL Queen Square Institute of Neurology and National Hospital for Neurology and Neurosurgery (NHNN), Queen Square, London WC1N 3BG, UK
| | - Matthew C Walker
- UCL Queen Square Institute of Neurology and National Hospital for Neurology and Neurosurgery (NHNN), Queen Square, London WC1N 3BG, UK
| | - Yujiang Wang
- CNNP Laboratory (www.cnnp-lab.com), Interdisciplinary Computing and Complex BioSystems Group, School of Computing, Newcastle Helix, Newcastle University, Newcastle-upon-Tyne, NE4 5TG, UK
- UCL Queen Square Institute of Neurology and National Hospital for Neurology and Neurosurgery (NHNN), Queen Square, London WC1N 3BG, UK
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Saboo KV, Balzekas I, Kremen V, Varatharajah Y, Kucewicz M, Iyer RK, Worrell GA. Leveraging electrophysiologic correlates of word encoding to map seizure onset zone in focal epilepsy: Task-dependent changes in epileptiform activity, spectral features, and functional connectivity. Epilepsia 2021; 62:2627-2639. [PMID: 34536230 DOI: 10.1111/epi.17067] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2021] [Revised: 08/31/2021] [Accepted: 09/01/2021] [Indexed: 11/29/2022]
Abstract
OBJECTIVE Verbal memory dysfunction is common in focal, drug-resistant epilepsy (DRE). Unfortunately, surgical removal of seizure-generating brain tissue can be associated with further memory decline. Therefore, localization of both the circuits generating seizures and those underlying cognitive functions is critical in presurgical evaluations for patients who may be candidates for resective surgery. We used intracranial electroencephalographic (iEEG) recordings during a verbal memory task to investigate word encoding in focal epilepsy. We hypothesized that engagement in a memory task would exaggerate local iEEG feature differences between the seizure onset zone (SOZ) and neighboring tissue as compared to wakeful rest ("nontask"). METHODS Ten participants undergoing presurgical iEEG evaluation for DRE performed a free recall verbal memory task. We evaluated three iEEG features in SOZ and non-SOZ electrodes during successful word encoding and compared them with nontask recordings: interictal epileptiform spike (IES) rates, power in band (PIB), and relative entropy (REN; a functional connectivity measure). RESULTS We found a complex pattern of PIB and REN changes in SOZ and non-SOZ electrodes during successful word encoding compared to nontask. Successful word encoding was associated with a reduction in local electrographic functional connectivity (increased REN), which was most exaggerated in temporal lobe SOZ. The IES rates were reduced during task, but only in the non-SOZ electrodes. Compared with nontask, REN features during task yielded marginal improvements in SOZ classification. SIGNIFICANCE Previous studies have supported REN as a biomarker for epileptic brain. We show that REN differences between SOZ and non-SOZ are enhanced during a verbal memory task. We also show that IESs are reduced during task in non-SOZ, but not in SOZ. These findings support the hypothesis that SOZ and non-SOZ respond differently to task and warrant further exploration into the use of cognitive tasks to identify functioning memory circuits and localize SOZ.
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Affiliation(s)
- Krishnakant V Saboo
- Department of Electrical and Computer Engineering, University of Illinois, Urbana, Illinois, USA.,Bioelectronics, Neurophysiology, and Engineering Laboratory, Department of Neurology, Mayo Clinic, Rochester, Minnesota, USA.,Mayo Clinic Graduate School of Biomedical Sciences, Mayo Clinic School of Medicine and Mayo Clinic Medical Scientist Training Program, Mayo Clinic, Rochester, Minnesota, USA
| | - Irena Balzekas
- Bioelectronics, Neurophysiology, and Engineering Laboratory, Department of Neurology, Mayo Clinic, Rochester, Minnesota, USA.,Mayo Clinic Graduate School of Biomedical Sciences, Mayo Clinic School of Medicine and Mayo Clinic Medical Scientist Training Program, Mayo Clinic, Rochester, Minnesota, USA
| | - Vaclav Kremen
- Bioelectronics, Neurophysiology, and Engineering Laboratory, Department of Neurology, Mayo Clinic, Rochester, Minnesota, USA.,Czech Institute of Informatics, Robotics, and Cybernetics, Czech Technical University in Prague, Prague, Czech Republic
| | - Yogatheesan Varatharajah
- Department of Electrical and Computer Engineering, University of Illinois, Urbana, Illinois, USA.,Department of Bioengineering, University of Illinois, Urbana, Illinois, USA
| | - Michal Kucewicz
- Bioelectronics, Neurophysiology, and Engineering Laboratory, Department of Neurology, Mayo Clinic, Rochester, Minnesota, USA.,Faculty of Electronics, Telecommunications, and Informatics, Multimedia Systems Department, BioTechMed Center, Gdansk University of Technology, Gdansk, Poland.,Department of Physiology and Biomedical Engineering, Mayo Clinic, Rochester, Minnesota, USA
| | - Ravishankar K Iyer
- Department of Electrical and Computer Engineering, University of Illinois, Urbana, Illinois, USA
| | - Gregory A Worrell
- Bioelectronics, Neurophysiology, and Engineering Laboratory, Department of Neurology, Mayo Clinic, Rochester, Minnesota, USA
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Liu S, Li M, Feng Y, Zhang M, Acquah MEE, Huang S, Chen J, Ren P. Brain Network Analysis by Stable and Unstable EEG Components. IEEE J Biomed Health Inform 2021; 25:1080-1092. [PMID: 32780702 DOI: 10.1109/jbhi.2020.3015471] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
OBJECTIVE Previous studies have already shown that electroencephalography (EEG) brain network (BN) can reflect the health status of individuals. However, novel methods are still needed for BN analysis. Therefore, in this study, BNs were constructed based on stable and unstable EEG components, and these may be implemented for disease diagnosis. METHODS Parkinson's disease (PD) was used as an example to illustrate this method. First, EEG signals were decomposed into dynamic modes (DMs). Each DM contains one eigenvalue that can determine not only the stability of that mode, but also its corresponding oscillatory frequency. Second, the stable and unstable components of EEG signals in each frequency band (delta, theta, alpha and beta) were calculated, which are based on the stable and unstable DMs within each respective frequency band. Third, newly developed BNs were constructed, including stable brain network (SBN), unstable brain network (UBN) and inter-connected brain network (IBN). Finally, their topological attributes were extracted in order to differentiate between PD patients and healthy controls (HC). Furthermore, topological attributes were also derived from traditional brain network (TBN) for comparison. RESULTS Most topological attributes of SBN, UBN and IBN can significantly differentiate between PD patients and HC ( p value 0.05). Furthermore, the area under the curve (AUC), precision and recall values of SBN analysis are all significantly higher than TBN. CONCLUSION We proposed a new perspective on EEG BN analysis. SIGNIFICANCE These newly developed BNs not only have biological significance, but also could be widely applied in most medical and engineering fields.
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Demuru M, Zweiphenning W, van Blooijs D, Van Eijsden P, Leijten F, Zijlmans M, Kalitzin S. Validation of virtual resection on intraoperative interictal data acquired during epilepsy surgery. J Neural Eng 2020; 17. [PMID: 33086212 DOI: 10.1088/1741-2552/abc3a8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Accepted: 10/21/2020] [Indexed: 11/11/2022]
Abstract
OBJECTIVE A 'Virtual resection' consists of computationally simulating the effect of an actual resection on the brain. We validated two functional connectivity based virtual resection methods with the actual connectivity measured using post-resection intraoperative recordings. METHODS A non-linear association index was applied to pre-resection recordings from 11 extra-temporal focal epilepsy patients. We computed two virtual resection strategies: first, a 'naive' one obtained by simply removing from the connectivity matrix the electrodes that were resected; second, a virtual resection with partialization accounting for the influence of resected electrodes on not-resected electrodes. We validated the virtual resections with two analysis: 1) We tested with a Kolmogorov-Smirnov test if the distributions of connectivity values after the virtual resections differed from the actual post-resection connectivity distribution; 2) we tested if the overall effect of the resection measured by contrasting pre-resection and post-resection connectivity values is detectable with the virtual resection approach using a Kolmogorv-Smirnov test. RESULTS The estimation of post-resection connectivity values did not succeed for both methods. In the second analysis, the naive method failed completely to detect the effect found between pre-resection and post-resection connectivity distributions, while the partialization method agreed with post-resection measurements in detecting a drop connectivity compared to pre-resection recordings. CONCLUSION Our findings suggest that the partialization technique is superior to the naive method in detecting the overall effect after the resection. SIGNIFICANCE We pointed out how a realistic validation based on actual post-resection recordings reveals that virtual resection methods are not yet mature to inform the clinical decision-making.
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Affiliation(s)
- Matteo Demuru
- Research, SEIN, Hoofddorp, Noord-Holland, NETHERLANDS
| | - Willemiek Zweiphenning
- Neurology and Neurosurgery, UMC Utrecht Brain Center Rudolf Magnus, Utrecht, Utrecht, NETHERLANDS
| | - Dorien van Blooijs
- Neurology and Neurosurgery, UMC Utrecht Brain Center Rudolf Magnus, Utrecht, Utrecht, NETHERLANDS
| | - Pieter Van Eijsden
- Neurology and Neurosurgery, UMC Utrecht Brain Center Rudolf Magnus, Utrecht, Utrecht, NETHERLANDS
| | - Frans Leijten
- Neurology and Neurosurgery, UMC Utrecht Brain Center Rudolf Magnus, Utrecht, Utrecht, NETHERLANDS
| | - Maeike Zijlmans
- Neurology and Neurosurgery, UMC Utrecht Brain Center Rudolf Magnus, Utrecht, Utrecht, NETHERLANDS
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Martínez CGB, Niediek J, Mormann F, Andrzejak RG. Seizure Onset Zone Lateralization Using a Non-linear Analysis of Micro vs. Macro Electroencephalographic Recordings During Seizure-Free Stages of the Sleep-Wake Cycle From Epilepsy Patients. Front Neurol 2020; 11:553885. [PMID: 33041993 PMCID: PMC7527464 DOI: 10.3389/fneur.2020.553885] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Accepted: 08/12/2020] [Indexed: 11/23/2022] Open
Abstract
The application of non-linear signal analysis techniques to biomedical data is key to improve our knowledge about complex physiological and pathological processes. In particular, the use of non-linear techniques to study electroencephalographic (EEG) recordings can provide an advanced characterization of brain dynamics. In epilepsy these dynamics are altered at different spatial scales of neuronal organization. We therefore apply non-linear signal analysis to EEG recordings from epilepsy patients derived with intracranial hybrid electrodes, which are composed of classical macro contacts and micro wires. Thereby, these electrodes record EEG at two different spatial scales. Our aim is to test the degree to which the analysis of the EEG recorded at these different scales allows us to characterize the neuronal dynamics affected by epilepsy. For this purpose, we retrospectively analyzed long-term recordings performed during five nights in three patients during which no seizures took place. As a benchmark we used the accuracy with which this analysis allows determining the hemisphere that contains the seizure onset zone, which is the brain area where clinical seizures originate. We applied the surrogate-corrected non-linear predictability score (ψ), a non-linear signal analysis technique which was shown previously to be useful for the lateralization of the seizure onset zone from classical intracranial EEG macro contact recordings. Higher values of ψ were found predominantly for signals recorded from the hemisphere containing the seizure onset zone as compared to signals recorded from the opposite hemisphere. These differences were found not only for the EEG signals recorded with macro contacts, but also for those recorded with micro wires. In conclusion, the information obtained from the analysis of classical macro EEG contacts can be complemented by the one of micro wire EEG recordings. This combined approach may therefore help to further improve the degree to which quantitative EEG analysis can contribute to the diagnostics in epilepsy patients.
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Affiliation(s)
- Cristina G B Martínez
- Department of Communication and Information Technologies, Universitat Pompeu Fabra, Barcelona, Spain
| | - Johannes Niediek
- Edmond and Lily Safra Center for Brain Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Florian Mormann
- Department of Epileptology, University of Bonn, Bonn, Germany
| | - Ralph G Andrzejak
- Department of Communication and Information Technologies, Universitat Pompeu Fabra, Barcelona, Spain
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Multi-feature localization of epileptic foci from interictal, intracranial EEG. Clin Neurophysiol 2019; 130:1945-1953. [PMID: 31465970 DOI: 10.1016/j.clinph.2019.07.024] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Revised: 07/09/2019] [Accepted: 07/19/2019] [Indexed: 02/07/2023]
Abstract
OBJECTIVE When considering all patients with focal drug-resistant epilepsy, as high as 40-50% of patients suffer seizure recurrence after surgery. To achieve seizure freedom without side effects, accurate localization of the epileptogenic tissue is crucial before its resection. We investigate an automated, fast, objective mapping process that uses only interictal data. METHODS We propose a novel approach based on multiple iEEG features, which are used to train a support vector machine (SVM) model for classification of iEEG electrodes as normal or pathologic using 30 min of inter-ictal recording. RESULTS The tissue under the iEEG electrodes, classified as epileptogenic, was removed in 17/18 excellent outcome patients and was not entirely resected in 8/10 poor outcome patients. The overall best result was achieved in a subset of 9 excellent outcome patients with the area under the receiver operating curve = 0.95. CONCLUSION SVM models combining multiple iEEG features show better performance than algorithms using a single iEEG marker. Multiple iEEG and connectivity features in presurgical evaluation could improve epileptogenic tissue localization, which may improve surgical outcome and minimize risk of side effects. SIGNIFICANCE In this study, promising results were achieved in localization of epileptogenic regions by SVM models that combine multiple features from 30 min of inter-ictal iEEG recordings.
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Shah P, Bernabei JM, Kini LG, Ashourvan A, Boccanfuso J, Archer R, Oechsel K, Das SR, Stein JM, Lucas TH, Bassett DS, Davis KA, Litt B. High interictal connectivity within the resection zone is associated with favorable post-surgical outcomes in focal epilepsy patients. NEUROIMAGE-CLINICAL 2019; 23:101908. [PMID: 31491812 PMCID: PMC6617333 DOI: 10.1016/j.nicl.2019.101908] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/20/2019] [Revised: 06/13/2019] [Accepted: 06/17/2019] [Indexed: 01/21/2023]
Abstract
Patients with drug-resistant focal epilepsy are often candidates for invasive surgical therapies. In these patients, it is necessary to accurately localize seizure generators to ensure seizure freedom following intervention. While intracranial electroencephalography (iEEG) is the gold standard for mapping networks for surgery, this approach requires inducing and recording seizures, which may cause patient morbidity. The goal of this study is to evaluate the utility of mapping interictal (non-seizure) iEEG networks to identify targets for surgical treatment. We analyze interictal iEEG recordings and neuroimaging from 27 focal epilepsy patients treated via surgical resection. We generate interictal functional networks by calculating pairwise correlation of iEEG signals across different frequency bands. Using image coregistration and segmentation, we identify electrodes falling within surgically resected tissue (i.e. the resection zone), and compute node-level and edge-level synchrony in relation to the resection zone. We further associate these metrics with post-surgical outcomes. Greater overlap between resected electrodes and highly synchronous electrodes is associated with favorable post-surgical outcomes. Additionally, good-outcome patients have significantly higher connectivity localized within the resection zone compared to those with poorer postoperative seizure control. This finding persists following normalization by a spatially-constrained null model. This study suggests that spatially-informed interictal network synchrony measures can distinguish between good and poor post-surgical outcomes. By capturing clinically-relevant information during interictal periods, our method may ultimately reduce the need for prolonged invasive implants and provide insights into the pathophysiology of an epileptic brain. We discuss next steps for translating these findings into a prospectively useful clinical tool. We analyze interictal iEEG recordings and neuroimaging from epilepsy patients We find that high interictal strength selectivity is associated with better outcomes This effect appears to be driven largely by connectivity within the resection zone Interictal recordings can guide identification of seizure-generating networks
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Affiliation(s)
- Preya Shah
- Department of Bioengineering, School of Engineering & Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA; Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA.
| | - John M Bernabei
- Department of Bioengineering, School of Engineering & Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA; Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Lohith G Kini
- Department of Bioengineering, School of Engineering & Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA; Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Arian Ashourvan
- Department of Bioengineering, School of Engineering & Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA; Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Jacqueline Boccanfuso
- Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Ryan Archer
- Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Kelly Oechsel
- Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Sandhitsu R Das
- Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Joel M Stein
- Department of Radiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Timothy H Lucas
- Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Danielle S Bassett
- Department of Bioengineering, School of Engineering & Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA; Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Electrical & Systems Engineering, School of Engineering & Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Physics & Astronomy, College of Arts & Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Kathryn A Davis
- Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
| | - Brian Litt
- Department of Bioengineering, School of Engineering & Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA; Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Neurology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA; Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
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12
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Su YC, Wu SC, Chen C, Chou CW, Hung SC, Lee Swindlehurst A, Kwan SY. Sample Entropy of High Frequency Oscillations for Epileptogenic Zone Localization. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2018; 2018:1-4. [PMID: 30440253 DOI: 10.1109/embc.2018.8512380] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
For epileptic patients whose seizures are poorly controlled with medication, removing the brain region responsible for seizure onset is a treatment option. This requires the epileptogenic zone (EZ) to be accurately delineated. In this paper, a two-stage approach for EZ delineation is proposed. The algorithm starts by detecting events of high-frequency oscillations (HFOs) directly from the multi-channel intracranial electroencephalograms (iEEGs). The sample entropy is then computed for each of their channels that will be used for determining the channels correlated with the EZ. The performance of our proposed method is evaluated using the receiver operating characteristic curve analysis, and the results indicate that our proposed approach can provide an accurate estimation of the EZ.
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13
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Sinha N, Dauwels J, Kaiser M, Cash SS, Brandon Westover M, Wang Y, Taylor PN. Predicting neurosurgical outcomes in focal epilepsy patients using computational modelling. Brain 2016; 140:319-332. [PMID: 28011454 PMCID: PMC5278304 DOI: 10.1093/brain/aww299] [Citation(s) in RCA: 173] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Revised: 10/08/2016] [Accepted: 10/10/2016] [Indexed: 01/03/2023] Open
Abstract
See Eissa and Schevon (doi:10.1093/aww332) for a scientific commentary on this article. Surgery can be a last resort for patients with intractable, medically refractory epilepsy. For many of these patients, however, there is substantial risk that the surgery will be ineffective. The prediction of who is likely to benefit from a surgical approach is crucial for being able to inform patients better, conduct principled prospective clinical trials, and ultimately tailor therapeutic approaches to these patients more effectively. Dynamical computational models, informed with patient data, can be used to make predictions and give mechanistic insight. In this study, we develop patient-specific dynamical network models of epileptogenic cortex. We infer the network connectivity matrix from non-seizure electrographic recordings of patients and use these connectivity matrices as the network structure in our model. The model simulates the dynamics of a bi-stable switch at every node in this network, meaning that every node starts in a background state, but has the ability to transit to a co-existing seizure state. Whether a transition happens in a node is partly determined by the stochastic nature of the input to the node, but also by the input the node receives from other connected nodes in the network. By conducting simulations with such a model, we can detect the average transition time for nodes in a given network, and therefore define nodes with a short transition time as highly epileptogenic. In a retrospective study, we found that in some patients the regions with high epileptogenicity in the model overlap with those identified clinically as the seizure onset zone. Moreover, it was found that the resection of these regions in the model reduces the overall likelihood of a seizure. Following removal of these regions in the model, we predicted surgical outcomes and compared these to actual patient outcomes. Our predictions were found to be 81.3% accurate on a dataset of 16 patients with intractable epilepsy. Intriguingly, in patients with unsuccessful outcomes, the proposed computational approach is able to suggest alternative resection sites. The model presented here gives mechanistic insight as to why surgery may be unsuccessful in some patients. This may aid clinicians in presurgical evaluation by providing a tool to explore various surgical options, offering complementary information to existing clinical techniques.
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Affiliation(s)
- Nishant Sinha
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore
| | - Justin Dauwels
- School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore
| | - Marcus Kaiser
- Interdisciplinary Computing and Complex BioSystems (ICOS) Research Group, School of Computing Science, Newcastle University, Newcastle upon Tyne, UK.,Institute of Neuroscience, Faculty of Medical Science, Newcastle University, Newcastle upon Tyne, UK
| | - Sydney S Cash
- Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA
| | - M Brandon Westover
- Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA
| | - Yujiang Wang
- Interdisciplinary Computing and Complex BioSystems (ICOS) Research Group, School of Computing Science, Newcastle University, Newcastle upon Tyne, UK
| | - Peter N Taylor
- Interdisciplinary Computing and Complex BioSystems (ICOS) Research Group, School of Computing Science, Newcastle University, Newcastle upon Tyne, UK .,Institute of Neuroscience, Faculty of Medical Science, Newcastle University, Newcastle upon Tyne, UK.,Institute of Neurology, University College London, UK
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14
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Khambhati AN, Davis KA, Oommen BS, Chen SH, Lucas TH, Litt B, Bassett DS. Dynamic Network Drivers of Seizure Generation, Propagation and Termination in Human Neocortical Epilepsy. PLoS Comput Biol 2015; 11:e1004608. [PMID: 26680762 PMCID: PMC4682976 DOI: 10.1371/journal.pcbi.1004608] [Citation(s) in RCA: 126] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2015] [Accepted: 10/16/2015] [Indexed: 12/16/2022] Open
Abstract
The epileptic network is characterized by pathologic, seizure-generating 'foci' embedded in a web of structural and functional connections. Clinically, seizure foci are considered optimal targets for surgery. However, poor surgical outcome suggests a complex relationship between foci and the surrounding network that drives seizure dynamics. We developed a novel technique to objectively track seizure states from dynamic functional networks constructed from intracranial recordings. Each dynamical state captures unique patterns of network connections that indicate synchronized and desynchronized hubs of neural populations. Our approach suggests that seizures are generated when synchronous relationships near foci work in tandem with rapidly changing desynchronous relationships from the surrounding epileptic network. As seizures progress, topographical and geometrical changes in network connectivity strengthen and tighten synchronous connectivity near foci-a mechanism that may aid seizure termination. Collectively, our observations implicate distributed cortical structures in seizure generation, propagation and termination, and may have practical significance in determining which circuits to modulate with implantable devices.
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Affiliation(s)
- Ankit N. Khambhati
- Department of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Penn Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
| | - Kathryn A. Davis
- Penn Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Department of Neurology, Hospital of the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
| | - Brian S. Oommen
- Penn Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Department of Neurology, Hospital of the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
| | - Stephanie H. Chen
- Penn Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Department of Neurology, Hospital of the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
| | - Timothy H. Lucas
- Penn Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Department of Neurosurgery, Hospital of the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
| | - Brian Litt
- Department of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Penn Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Department of Neurology, Hospital of the University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
| | - Danielle S. Bassett
- Department of Bioengineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Penn Center for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
- Department of Electrical and Systems Engineering, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America
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15
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Dauwels J, Cash S. Automated localization of the seizure focus using interictal intracranial EEG. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2015; 2014:4439-42. [PMID: 25570977 DOI: 10.1109/embc.2014.6944609] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Up to 30% of epileptic patients have seizures poorly controlled with anti-epileptic drugs alone. Surgical therapy might be beneficial to patients who respond poorly to drug treatments. It is therefore crucial to accurately localize the seizure focus. Neurologists rely heavily on seizures to determine the focus. The invasive recordings usually continue for days or weeks, which is costly and entails significant risk for the patients. In this paper, techniques are developed to localize the seizure focus using brief interictal intracranial EEG (iEEG). A supervised learning paradigm is utilized making use of features extracted from interictal iEEG on multiple referential montages. Analysis of 14 epileptic patients (implanted with depth electrodes) shows that iEEG features such as slowing, ripples, spikes, and local synchrony measures are strongly correlated to the seizure focus. These procedures may allow reliable localization of the seizure focus from brief interictal iEEG, which in turn may lead to shorter hospitalizations.
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16
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Vega-Zelaya L, Pastor JE, de Sola RG, Ortega GJ. Inhomogeneous cortical synchronization and partial epileptic seizures. Front Neurol 2014; 5:187. [PMID: 25309507 PMCID: PMC4173324 DOI: 10.3389/fneur.2014.00187] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2014] [Accepted: 09/10/2014] [Indexed: 11/24/2022] Open
Abstract
Objective: Interictal synchronization clusters have recently been described in several publications using diverse techniques, including neurophysiological recordings and fMRI, in patients suffering from epilepsy. However, little is known about the role of these hyper-synchronous areas during seizures. In this work, we report an analysis of synchronization clusters jointly with several network measures during seizure activity; we then discuss our findings in the context of prior literature. Methods: Subdural activity was recorded by electrocorticography (with 60 electrodes placed at temporal and parietal lobe locations) in a patient with temporal lobe epilepsy with partial seizures with and without secondary generalization (SG). Both interictal and ictal activities (during four seizures) were investigated and characterized using local synchronization and complex network methodology. The modularity, density of links, average clustering coefficient, and average path lengths were calculated to obtain information about the dynamics of the global network. Functional connectivity changes during the seizures were compared with the time evolution of highly synchronized areas. Results: Our findings reveal temporal changes in local synchronization areas during seizures and a tight relationship between the cortical locations of these areas and the patterns of their evolution over time. Seizure evolution and SG appear to be driven by two different underlying mechanisms.
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Affiliation(s)
- Lorena Vega-Zelaya
- Clinical Neurophysiology Service, Hospital Universitario la Princesa , Madrid , Spain
| | - Jesús Eduardo Pastor
- Clinical Neurophysiology Service, Hospital Universitario la Princesa , Madrid , Spain ; Fundacion de Investigación Biomédica Hospital de la Princesa , Madrid , Spain
| | - Rafael G de Sola
- Fundacion de Investigación Biomédica Hospital de la Princesa , Madrid , Spain ; Neurosurgery Service, Hospital Universitario la Princesa , Madrid , Spain
| | - Guillermo J Ortega
- Fundacion de Investigación Biomédica Hospital de la Princesa , Madrid , Spain ; Neurosurgery Service, Hospital Universitario la Princesa , Madrid , Spain
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17
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Sinha N, Dauwels J, Wang Y, Cash SS, Taylor PN. An in silico approach for pre-surgical evaluation of an epileptic cortex. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2014; 2014:4884-4887. [PMID: 25571086 DOI: 10.1109/embc.2014.6944718] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Clinical evidence indicates that a third of patients with epilepsy are refractory to anti-epileptic drug treatment. For some of these patients better seizure control can be achieved by surgical treatment in which the seizure focus is localised and resected while avoiding injury to crucial cortical tissues. In this paper, non-seizure (interictal) epoch of electrographic recording was used to calculate the functional synchrony between different cortical regions. This synchrony measure was then used as the connectivity parameter in a computational model of transitions to a seizure like state. The seizure focus was localised using this model and the surgical intervention procedure was simulated. It was shown that the in silico removal of a subset of seizure focus can decrease the likelihood of a seizure in the model. The in silico results were also compared with the clinical outcomes and a convincing agreement was shown for five out of six patients; sixth being a counter-example. These methods may aid in the identification of the seizure onset zone using the interictal electrographic data. Moreover, it may facilitate neurosurgeons to investigate alternative cortical tissues to operate on if the seizure focus cannot be operated.
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18
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Antony AR, Alexopoulos AV, González-Martínez JA, Mosher JC, Jehi L, Burgess RC, So NK, Galán RF. Functional connectivity estimated from intracranial EEG predicts surgical outcome in intractable temporal lobe epilepsy. PLoS One 2013; 8:e77916. [PMID: 24205027 PMCID: PMC3813548 DOI: 10.1371/journal.pone.0077916] [Citation(s) in RCA: 66] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2013] [Accepted: 09/15/2013] [Indexed: 11/18/2022] Open
Abstract
This project aimed to determine if a correlation-based measure of functional connectivity can identify epileptogenic zones from intracranial EEG signals, as well as to investigate the prognostic significance of such a measure on seizure outcome following temporal lobe lobectomy. To this end, we retrospectively analyzed 23 adult patients with intractable temporal lobe epilepsy (TLE) who underwent an invasive stereo-EEG (SEEG) evaluation between January 2009 year and January 2012. A follow-up of at least one year was required. The primary outcome measure was complete seizure-freedom at last follow-up. Functional connectivity between two areas in the temporal lobe that were sampled by two SEEG electrode contacts was defined as Pearson's correlation coefficient of interictal activity between those areas. SEEG signals were filtered between 5 and 50 Hz prior to computing this correlation. The mean and standard deviation of the off diagonal elements in the connectivity matrix were also calculated. Analysis of the mean and standard deviation of the functional connections for each patient reveals that 90% of the patients who had weak and homogenous connections were seizure free one year after temporal lobectomy, whereas 85% of the patients who had stronger and more heterogeneous connections within the temporal lobe had recurrence of seizures. This suggests that temporal lobectomy is ineffective in preventing seizure recurrence for patients in whom the temporal lobe is characterized by weakly connected, homogenous networks. This pilot study shows promising potential of a simple measure of functional brain connectivity to identify epileptogenicity and predict the outcome of epilepsy surgery.
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Affiliation(s)
- Arun R. Antony
- Epilepsy Center, Cleveland Clinic, Cleveland, Ohio, United States of America
| | | | | | - John C. Mosher
- Epilepsy Center, Cleveland Clinic, Cleveland, Ohio, United States of America
| | - Lara Jehi
- Epilepsy Center, Cleveland Clinic, Cleveland, Ohio, United States of America
| | - Richard C. Burgess
- Epilepsy Center, Cleveland Clinic, Cleveland, Ohio, United States of America
| | - Norman K. So
- Epilepsy Center, Cleveland Clinic, Cleveland, Ohio, United States of America
| | - Roberto F. Galán
- Department of Neurosciences, School of Medicine, Case Western Reserve University, Cleveland, Ohio, United States of America
- * E-mail:
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19
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Palmigiano A, Pastor J, García de Sola R, Ortega GJ. Stability of synchronization clusters and seizurability in temporal lobe epilepsy. PLoS One 2012; 7:e41799. [PMID: 22844524 PMCID: PMC3402406 DOI: 10.1371/journal.pone.0041799] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2012] [Accepted: 06/25/2012] [Indexed: 01/03/2023] Open
Abstract
PURPOSE Identification of critical areas in presurgical evaluations of patients with temporal lobe epilepsy is the most important step prior to resection. According to the "epileptic focus model", localization of seizure onset zones is the main task to be accomplished. Nevertheless, a significant minority of epileptic patients continue to experience seizures after surgery (even when the focus is correctly located), an observation that is difficult to explain under this approach. However, if attention is shifted from a specific cortical location toward the network properties themselves, then the epileptic network model does allow us to explain unsuccessful surgical outcomes. METHODS The intraoperative electrocorticography records of 20 patients with temporal lobe epilepsy were analyzed in search of interictal synchronization clusters. Synchronization was analyzed, and the stability of highly synchronized areas was quantified. Surrogate data were constructed and used to statistically validate the results. Our results show the existence of highly localized and stable synchronization areas in both the lateral and the mesial areas of the temporal lobe ipsilateral to the clinical seizures. Synchronization areas seem to play a central role in the capacity of the epileptic network to generate clinical seizures. Resection of stable synchronization areas is associated with elimination of seizures; nonresection of synchronization clusters is associated with the persistence of seizures after surgery. DISCUSSION We suggest that synchronization clusters and their stability play a central role in the epileptic network, favoring seizure onset and propagation. We further speculate that the stability distribution of these synchronization areas would differentiate normal from pathologic cases.
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Affiliation(s)
| | - Jesús Pastor
- Instituto de Investigación Sanitaria Hospital de la Princesa, Madrid, Spain
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20
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Wu SC, Swindlehurst AL. EEG/MEG source localization using source deflated matching pursuit. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2012; 2011:6572-5. [PMID: 22255845 DOI: 10.1109/iembs.2011.6091621] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
A matching pursuit (MP) based algorithm, called source deflated matching pursuit (SDMP), is proposed for locating sources of brain activity. By iteratively deflating the contribution of identified sources to multiple measurement vectors (MMVs), the SDMP algorithm transforms the original multi-basis-vector/matrix selection problem into a single-basis-vector/matrix selection problem, which not only mitigates the residual-source interference but also remedies the intrinsic bias when locating deep sources. The robustness of the proposed algorithm to two bias factors is verified through simulations.
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Affiliation(s)
- Shun Chi Wu
- Department of Electrical Engineering and Computer Science, University of California, Irvine, CA 92697, USA.
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21
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PyEEG: an open source Python module for EEG/MEG feature extraction. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2011; 2011:406391. [PMID: 21512582 PMCID: PMC3070217 DOI: 10.1155/2011/406391] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/31/2010] [Revised: 10/26/2010] [Accepted: 12/31/2010] [Indexed: 12/04/2022]
Abstract
Computer-aided diagnosis of neural diseases from EEG signals (or other physiological signals that can be treated as time series, e.g., MEG) is an emerging field that has gained much attention in past years. Extracting features is a key component in the analysis of EEG signals. In our previous works, we have implemented many EEG feature extraction functions in the Python programming language. As Python is gaining more ground in scientific computing, an open source Python module for extracting EEG features has the potential to save much time for computational neuroscientists. In this paper, we introduce PyEEG, an open source Python module for EEG feature extraction.
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Bao FS, Li YL, Gao JM, Hu J. Performance of dynamic features in classifying scalp epileptic interictal and normal EEG. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2010; 2010:6308-11. [PMID: 21097363 DOI: 10.1109/iembs.2010.5628091] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Over 50 million people worldwide suffer from epilepsy. Recently, researchers have proposed computer-aided epilepsy diagnostic systems based on classifying scalp epileptic interictal and normal EEG. Features used in the classification can be divided into two groups: classical spectral features and dynamic features. Classical spectral features are similar to major frequency component identification that physicians use in conventional EEG reading. Because dynamic features are new compared to classical spectral features, we are interested in knowing whether they are suitable for this classification problem. To study this, we build such a system and compare the results between using classical spectral features and dynamic features. Furthermore, we study which dynamic features are more suitable, i.e., more discriminative, by ranking them using F-score. According to the result, we discuss redesigning certain dynamic features for better classification. This research is a preliminary study of using dynamic features of scalp interictal EEG for epilepsy diagnosis.
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