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Ding Z, Fleishman G, Yang X, Thompson P, Kwitt R, Niethammer M. Fast predictive simple geodesic regression. Med Image Anal 2019; 56:193-209. [PMID: 31252162 PMCID: PMC6661182 DOI: 10.1016/j.media.2019.06.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2018] [Revised: 05/31/2019] [Accepted: 06/11/2019] [Indexed: 01/28/2023]
Abstract
Deformable image registration and regression are important tasks in medical image analysis. However, they are computationally expensive, especially when analyzing large-scale datasets that contain thousands of images. Hence, cluster computing is typically used, making the approaches dependent on such computational infrastructure. Even larger computational resources are required as study sizes increase. This limits the use of deformable image registration and regression for clinical applications and as component algorithms for other image analysis approaches. We therefore propose using a fast predictive approach to perform image registrations. In particular, we employ these fast registration predictions to approximate a simplified geodesic regression model to capture longitudinal brain changes. The resulting method is orders of magnitude faster than the standard optimization-based regression model and hence facilitates large-scale analysis on a single graphics processing unit (GPU). We evaluate our results on 3D brain magnetic resonance images (MRI) from the ADNI datasets.
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Affiliation(s)
- Zhipeng Ding
- Department of Computer Science, University of North Carolina at Chapel Hill, USA 201 S. Columbia St., Chapel Hill, NC 27599, USA.
| | - Greg Fleishman
- Imaging Genetics Center, University of Southern California, USA 2001 N. Soto Street, SSB1-102, Los Angeles, CA 90032, USA; Department of Radiology, University of Pennsylvania, USA 3400 Civic Center Boulevard Atrium, Ground Floor, Philadelphia, PA 19104, USA.
| | - Xiao Yang
- Department of Computer Science, University of North Carolina at Chapel Hill, USA 201 S. Columbia St., Chapel Hill, NC 27599, USA.
| | - Paul Thompson
- Imaging Genetics Center, University of Southern California, USA 2001 N. Soto Street, SSB1-102, Los Angeles, CA 90032, USA.
| | - Roland Kwitt
- Department of Computer Science, University of Salzburg, Austria Jakob Haringer Strasse 2, 5020 Salzburg, Austria.
| | - Marc Niethammer
- Department of Computer Science, University of North Carolina at Chapel Hill, USA 201 S. Columbia St., Chapel Hill, NC 27599, USA; Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, USA 125 Mason Farm Road, Chapel Hill, NC 27599, USA.
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Ding Z, Fleishman G, Yang X, Thompson P, Kwitt R, Niethammer M. Fast Predictive Simple Geodesic Regression. ACTA ACUST UNITED AC 2017. [DOI: 10.1007/978-3-319-67558-9_31] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
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