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TaghiBeyglou B, Shamsollahi MB. ETucker: a constrained tensor decomposition for single trial ERP extraction. Physiol Meas 2023; 44:075005. [PMID: 37414004 DOI: 10.1088/1361-6579/ace510] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Accepted: 07/06/2023] [Indexed: 07/08/2023]
Abstract
Objective.In this paper, we propose a new tensor decomposition to extract event-related potentials (ERP) by adding a physiologically meaningful constraint to the Tucker decomposition.Approach.We analyze the performance of the proposed model and compare it with Tucker decomposition by synthesizing a dataset. The simulated dataset is generated using a 12th-order autoregressive model in combination with independent component analysis (ICA) on real no-task electroencephalogram (EEG) recordings. The dataset is manipulated to contain the P300 ERP component and to cover different SNR conditions, ranging from 0 to -30 dB, to simulate the presence of the P300 component in extremely noisy recordings. Furthermore, in order to assess the practicality of the proposed methodology in real-world scenarios, we utilized the brain-computer interface (BCI) competition III-dataset II.Main results.Our primary results demonstrate the superior performance of our approach compared to conventional methods commonly employed for single-trial estimation. Additionally, our method outperformed both Tucker decomposition and non-negative Tucker decomposition in the synthesized dataset. Furthermore, the results obtained from real-world data exhibited meaningful performance and provided insightful interpretations for the extracted P300 component.Significance.The findings suggest that the proposed decomposition is eminently capable of extracting the target P300 component's waveform, including latency and amplitude as well as its spatial location, using single-trial EEG recordings.
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Zandbagleh A, Mirzakuchaki S, Daliri MR, Premkumar P, Carretié L, Sanei S. Tensor factorization approach for ERP-based assessment of schizotypy in a novel auditory oddball task on perceived family stress. J Neural Eng 2022; 19. [PMID: 36541455 DOI: 10.1088/1741-2552/aca69f] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2022] [Accepted: 11/28/2022] [Indexed: 11/30/2022]
Abstract
Objective. Schizotypy, a potential phenotype for schizophrenia, is a personality trait that depicts psychosis-like signs in the normal range of psychosis continuum. Family communication may affect the social functioning of people with schizotypy. Greater family stress, such as irritability, criticism and less praise, is perceived at a higher level of schizotypy. This study aims to determine the differences between people with high and low levels of schizotypy using electroencephalography (EEG) during criticism, praise and neutral comments. EEGs were recorded from 29 participants in the general community who varied from low schizotypy to high schizotypy (HS) during a novel emotional auditory oddball task.Approach. We consider the difference in event-related potential parameters, namely the amplitude and latency of P300 subcomponents (P3a and P3b), between pairs of target words (standard, positive, negative and neutral). A model based on tensor factorization is then proposed to detect these components from the EEG using the CANDECOMP/PARAFAC decomposition technique. Finally, we employ the mutual information estimation method to select influential features for classification.Main results.The highest classification accuracy, sensitivity, and specificity of 93.1%, 94.73%, and 90% are obtained via leave-one-out cross validation.Significance. This is the first attempt to investigate the identification of individuals with psychometrically-defined HS from brain responses that are specifically associated with perceiving family stress and schizotypy. By measuring these brain responses to social stress, we achieve the goal of improving the accuracy in detection of early episodes of psychosis.
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Affiliation(s)
- Ahmad Zandbagleh
- School of Electrical Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Sattar Mirzakuchaki
- School of Electrical Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Mohammad Reza Daliri
- School of Electrical Engineering, Iran University of Science and Technology, Tehran, Iran
| | - Preethi Premkumar
- Division of Psychology, School of Applied Sciences, London Southbank University, London, United Kingdom
| | - Luis Carretié
- Facultad de Psicología, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Saeid Sanei
- School of Science and Technology, Nottingham Trent University, Clifton Lane, Nottingham, United Kingdom
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Mowla MR, Huggins JE, Natarajan B, Thompson DE. P300 Latency Estimation Using Least Mean Squares Filter. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2018; 2018:1976-1979. [PMID: 30440786 DOI: 10.1109/embc.2018.8512644] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Event-related potentials (ERPs) are the brain response directly related to specific events or stimuli. The P300 ERP is a positive deflection nominally 300ms post-stimulus that is related to mental decision making processes and also used in P300-based speller systems. Single-trial estimation of P300 responses will help to understand the underlying cognitive process more precisely and also to improve the speed of speller brain-computer interfaces (BCIs). This paper aims to develop a single-trial estimation of the P300 amplitudes and latencies by using the least mean squares (LMS) adaptive filtering method. Results for real data from people with amyotrophic lateral sclerosis (ALS) have shown that the LMS filter can be effectively used to estimate P300 latencies.
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Ranjbar M, Mikaeili M, Khorrami Banaraki A. Single Trial Estimation of Peak Latency and Amplitude of Multiple Correlated ERP Components. J Med Biol Eng 2017. [DOI: 10.1007/s40846-017-0309-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Lee WL, Tan T, Falkmer T, Leung YH. Single-trial event-related potential extraction through one-unit ICA-with-reference. J Neural Eng 2016; 13:066010. [PMID: 27739404 DOI: 10.1088/1741-2560/13/6/066010] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
OBJECTIVE In recent years, ICA has been one of the more popular methods for extracting event-related potential (ERP) at the single-trial level. It is a blind source separation technique that allows the extraction of an ERP without making strong assumptions on the temporal and spatial characteristics of an ERP. However, the problem with traditional ICA is that the extraction is not direct and is time-consuming due to the need for source selection processing. In this paper, the application of an one-unit ICA-with-Reference (ICA-R), a constrained ICA method, is proposed. APPROACH In cases where the time-region of the desired ERP is known a priori, this time information is utilized to generate a reference signal, which is then used for guiding the one-unit ICA-R to extract the source signal of the desired ERP directly. MAIN RESULTS Our results showed that, as compared to traditional ICA, ICA-R is a more effective method for analysing ERP because it avoids manual source selection and it requires less computation thus resulting in faster ERP extraction. SIGNIFICANCE In addition to that, since the method is automated, it reduces the risks of any subjective bias in the ERP analysis. It is also a potential tool for extracting the ERP in online application.
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Affiliation(s)
- Wee Lih Lee
- Department of Electrical and Computer Engineering, Curtin University, Perth, Australia
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Kim K, Lim SH, Lee J, Kang WS, Moon C, Choi JW. Joint Maximum Likelihood Time Delay Estimation of Unknown Event-Related Potential Signals for EEG Sensor Signal Quality Enhancement. SENSORS 2016; 16:s16060891. [PMID: 27322267 PMCID: PMC4934317 DOI: 10.3390/s16060891] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/01/2016] [Revised: 06/03/2016] [Accepted: 06/09/2016] [Indexed: 12/02/2022]
Abstract
Electroencephalograms (EEGs) measure a brain signal that contains abundant information about the human brain function and health. For this reason, recent clinical brain research and brain computer interface (BCI) studies use EEG signals in many applications. Due to the significant noise in EEG traces, signal processing to enhance the signal to noise power ratio (SNR) is necessary for EEG analysis, especially for non-invasive EEG. A typical method to improve the SNR is averaging many trials of event related potential (ERP) signal that represents a brain’s response to a particular stimulus or a task. The averaging, however, is very sensitive to variable delays. In this study, we propose two time delay estimation (TDE) schemes based on a joint maximum likelihood (ML) criterion to compensate the uncertain delays which may be different in each trial. We evaluate the performance for different types of signals such as random, deterministic, and real EEG signals. The results show that the proposed schemes provide better performance than other conventional schemes employing averaged signal as a reference, e.g., up to 4 dB gain at the expected delay error of 10°.
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Affiliation(s)
- Kyungsoo Kim
- Department of Information & Communication Engineering, Daegu Gyeongbuk Institute of Science and Technology, Daegu 771-813, Korea.
| | - Sung-Ho Lim
- Department of Information & Communication Engineering, Daegu Gyeongbuk Institute of Science and Technology, Daegu 771-813, Korea.
| | - Jaeseok Lee
- Department of Information & Communication Engineering, Daegu Gyeongbuk Institute of Science and Technology, Daegu 771-813, Korea.
| | - Won-Seok Kang
- Wellness Convergence Research Center, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 771-813, Korea.
| | - Cheil Moon
- Department of Brain & Cognitive Sciences, Daegu Gyeongbuk Institute of Science and Technology (DGIST), Daegu 771-813, Korea.
| | - Ji-Woong Choi
- Department of Information & Communication Engineering, Daegu Gyeongbuk Institute of Science and Technology, Daegu 771-813, Korea.
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Bajaj V, Pachori RB. Detection of Human Emotions Using Features Based on the Multiwavelet Transform of EEG Signals. BRAIN-COMPUTER INTERFACES 2015. [DOI: 10.1007/978-3-319-10978-7_8] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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Kouchaki S, Enshaeifar S, Cheong Took C, Sanei S. Complex tensor based blind source separation of EEG for tracking P300 subcomponents. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2015; 2015:6999-7002. [PMID: 26737903 DOI: 10.1109/embc.2015.7320003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Complex tensor factorisation of correlated brain sources is addressed in this paper. The electrical brain responses due to motory, sensory, or cognitive stimuli, i.e. event related potentials (ERPs), particularly P300, have been used for cognitive information processing. P300 has two subcomponents, P3a and P3b which are correlated and therefore, the traditional blind source separation approaches cannot solve the problem. In this work, a complex-valued tensor factorisation of electroencephalography (EEG) signals is introduced with the aim of separating P300 subcomponents. The proposed method uses complex-valued statistics to exploit the data correlation. In this way, the variations of P3a and p3b can be tracked for the assessment of the brain state. The results of this work will be compared with those of spatial principal component analysis (SPCA) method.
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Wu W, Wu C, Gao S, Liu B, Li Y, Gao X. Bayesian estimation of ERP components from multicondition and multichannel EEG. Neuroimage 2014; 88:319-39. [DOI: 10.1016/j.neuroimage.2013.11.028] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2013] [Revised: 11/11/2013] [Accepted: 11/14/2013] [Indexed: 11/28/2022] Open
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Ahirwal MK, Kumar A, Singh GK. EEG/ERP adaptive noise canceller design with controlled search space (CSS) approach in cuckoo and other optimization algorithms. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2013; 10:1491-1504. [PMID: 24407307 DOI: 10.1109/tcbb.2013.119] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
This paper explores the migration of adaptive filtering with swarm intelligence/evolutionary techniques employed in the field of electroencephalogram/event-related potential noise cancellation or extraction. A new approach is proposed in the form of controlled search space to stabilize the randomness of swarm intelligence techniques especially for the EEG signal. Swarm-based algorithms such as Particles Swarm Optimization, Artificial Bee Colony, and Cuckoo Optimization Algorithm with their variants are implemented to design optimized adaptive noise canceler. The proposed controlled search space technique is tested on each of the swarm intelligence techniques and is found to be more accurate and powerful. Adaptive noise canceler with traditional algorithms such as least-mean-square, normalized least-mean-square, and recursive least-mean-square algorithms are also implemented to compare the results. ERP signals such as simulated visual evoked potential, real visual evoked potential, and real sensorimotor evoked potential are used, due to their physiological importance in various EEG studies. Average computational time and shape measures of evolutionary techniques are observed 8.21E-01 sec and 1.73E-01, respectively. Though, traditional algorithms take negligible time consumption, but are unable to offer good shape preservation of ERP, noticed as average computational time and shape measure difference, 1.41E-02 sec and 2.60E+00, respectively.
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Affiliation(s)
- M K Ahirwal
- PanditDwarka Prasad Mishra Indian Institute of Information Technology, Design & Manufacturing Jabalpur, Jabalpur
| | - Anil Kumar
- PanditDwarka Prasad Mishra Indian Institute of Information Technology, Design & Manufacturing Jabalpur, Jabalpur
| | - G K Singh
- Indian Institute of Technology Roorkee, India, Jabalpur and University of Malaya, Malaysia
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A review on the computational methods for emotional state estimation from the human EEG. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2013; 2013:573734. [PMID: 23634176 PMCID: PMC3619694 DOI: 10.1155/2013/573734] [Citation(s) in RCA: 90] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/11/2013] [Accepted: 02/18/2013] [Indexed: 11/18/2022]
Abstract
A growing number of affective computing researches recently developed a computer system that can recognize an emotional state of the human user to establish affective human-computer interactions. Various measures have been used to estimate emotional states, including self-report, startle response, behavioral response, autonomic measurement, and neurophysiologic measurement. Among them, inferring emotional states from electroencephalography (EEG) has received considerable attention as EEG could directly reflect emotional states with relatively low costs and simplicity. Yet, EEG-based emotional state estimation requires well-designed computational methods to extract information from complex and noisy multichannel EEG data. In this paper, we review the computational methods that have been developed to deduct EEG indices of emotion, to extract emotion-related features, or to classify EEG signals into one of many emotional states. We also propose using sequential Bayesian inference to estimate the continuous emotional state in real time. We present current challenges for building an EEG-based emotion recognition system and suggest some future directions.
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12
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Lin Y, Wu W, Wu C, Liu B, Gao X. Extraction of mismatch negativity using a resampling-based spatial filtering method. J Neural Eng 2013; 10:026015. [PMID: 23448978 DOI: 10.1088/1741-2560/10/2/026015] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE It is currently a challenge to extract the mismatch negativity (MMN) waveform on the basis of a small number of EEG trials, which are typically unbalanced between conditions. APPROACH In order to address this issue, a method combining the techniques of resampling and spatial filtering is proposed in this paper. Specifically, the first step of the method, termed 'resampling difference', randomly samples the standard and deviant sweeps, and then subtracts standard sweeps from deviant sweeps. The second step of the method employs the spatial filters designed by a signal-to-noise ratio maximizer (SIM) to extract the MMN component. The SIM algorithm can maximize the signal-to-noise ratio for event-related potentials (ERPs) to improve extraction. Simulation data were used to evaluate the influence of three parameters (i.e. trial number, repeated-SIM times and sampling times) on the performance of the proposed method. MAIN RESULTS Results demonstrated that it was feasible and reliable to extract the MMN waveform using the method. Finally, an oddball paradigm with auditory stimuli of different frequencies was employed to record a few trials (50 trials of deviant sweeps and 250 trials of standard sweeps) of EEG data from 11 adult subjects. Results showed that the method could effectively extract the MMN using the EEG data of each individual subject. SIGNIFICANCE The extracted MMN waveform has a significantly larger peak amplitude and shorter latencies in response to the more deviant stimuli than in response to the less deviant stimuli, which agreed with the MMN properties reported in previous literature using grand-averaged EEG data of multi-subjects.
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Affiliation(s)
- Yanfei Lin
- School of Medicine, Tsinghua University, Beijing 100084, People's Republic of China
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13
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Thompson DE, Warschausky S, Huggins JE. Classifier-based latency estimation: a novel way to estimate and predict BCI accuracy. J Neural Eng 2012; 10:016006. [PMID: 23234797 DOI: 10.1088/1741-2560/10/1/016006] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
OBJECTIVE Brain-computer interfaces (BCIs) that detect event-related potentials (ERPs) rely on classification schemes that are vulnerable to latency jitter, a phenomenon known to occur with ERPs such as the P300 response. The objective of this work was to investigate the role that latency jitter plays in BCI classification. APPROACH We developed a novel method, classifier-based latency estimation (CBLE), based on a generalization of Woody filtering. The technique works by presenting the time-shifted data to the classifier, and using the time shift that corresponds to the maximal classifier score. MAIN RESULTS The variance of CBLE estimates correlates significantly (p < 10(-42)) with BCI accuracy in the Farwell-Donchin BCI paradigm. Additionally, CBLE predicts same-day accuracy, even from small datasets or datasets that have already been used for classifier training, better than the accuracy on the small dataset (p < 0.05). The technique should be relatively classifier-independent, and the results were confirmed on two linear classifiers. SIGNIFICANCE The results suggest that latency jitter may be an important cause of poor BCI performance, and methods that correct for latency jitter may improve that performance. CBLE can also be used to decrease the amount of data needed for accuracy estimation, allowing research on effects with shorter timescales.
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Affiliation(s)
- David E Thompson
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA.
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Makkiabadi B, Jarchi D, Sanei S. Blind separation and localization of correlated P300 subcomponents from single trial recordings using extended PARAFAC2 tensor model. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2012; 2011:6955-8. [PMID: 22255938 DOI: 10.1109/iembs.2011.6091758] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
A novel mathematical model based on multi-way data construction and analysis with the goal of simultaneously separating and localizing the brain sources specially the subcomponents of event related potentials (ERPs) is introduced. We represent multi-channel EEG data using a third-order tensor with modes: space (channels), time samples, and number of segments. Then, a multi-way technique, in particular, generalized version of PARAFAC2 method, is developed to blindly separate and localize mutually/temporally correlated P3a and P3b sources as subcomponents of P300 signal. In this paper the non-orthogonality of the ERP subcomponents is defined within the tensor model. In order to obtain essentially unique estimation of the signal components one parametric and one structural constraint are defined and imposed. The method is applied to both simulated and real data and has been shown to perform very well even in low signal to noise ratio situations. In addition, the method is compared with spatial principal component analysis (sPCA) and its superiority is demonstrated by using simulated signals.
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Affiliation(s)
- Bahador Makkiabadi
- NICE Group, Faculty of Engineering and Physical Sciences, University of Surrey, Guildford, UK
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