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Filippi J, Casti P, Antonelli G, Murdocca M, Mencattini A, Corsi F, D'Orazio M, Pecora A, De Luca M, Curci G, Ghibelli L, Sangiuolo F, Neale SL, Martinelli E. Cell Electrokinetic Fingerprint: A Novel Approach Based on Optically Induced Dielectrophoresis (ODEP) for In-Flow Identification of Single Cells. SMALL METHODS 2024; 8:e2300923. [PMID: 38693090 DOI: 10.1002/smtd.202300923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2023] [Revised: 04/04/2024] [Indexed: 05/03/2024]
Abstract
A novel optically induced dielectrophoresis (ODEP) system that can operate under flow conditions is designed for automatic trapping of cells and subsequent induction of 2D multi-frequency cell trajectories. Like in a "ping-pong" match, two virtual electrode barriers operate in an alternate mode with varying frequencies of the input voltage. The so-derived cell motions are characterized via time-lapse microscopy, cell tracking, and state-of-the-art machine learning algorithms, like the wavelet scattering transform (WST). As a cell-electrokinetic fingerprint, the dynamic of variation of the cell displacements happening, over time, is quantified in response to different frequency values of the induced electric field. When tested on two biological scenarios in the cancer domain, the proposed approach discriminates cellular dielectric phenotypes obtained, respectively, at different early phases of drug-induced apoptosis in prostate cancer (PC3) cells and for differential expression of the lectine-like oxidized low-density lipoprotein receptor-1 (LOX-1) transcript levels in human colorectal adenocarcinoma (DLD-1) cells. The results demonstrate increased discrimination of the proposed system and pose an additional basis for making ODEP-based assays addressing cancer heterogeneity for precision medicine and pharmacological research.
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Affiliation(s)
- Joanna Filippi
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
| | - Paola Casti
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
| | - Gianni Antonelli
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
| | - Michela Murdocca
- Department of Biomedicine and Prevention, University of Rome Tor Vergata, Via Montpellier 1, Rome, 00133, Italy
| | - Arianna Mencattini
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
| | - Francesca Corsi
- Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica 1, Rome, 00133, Italy
- Department of Chemical Science and Technologies, University of Rome Tor Vergata, Via della Ricerca Scientifica 1, Rome, 00133, Italy
| | - Michele D'Orazio
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
| | - Alessandro Pecora
- Italian Nation Research Council (CNR), Via del Fosso del Cavaliere 100, Rome, 00133, Italy
| | - Massimiliano De Luca
- Italian Nation Research Council (CNR), Via del Fosso del Cavaliere 100, Rome, 00133, Italy
| | - Giorgia Curci
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
| | - Lina Ghibelli
- Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica 1, Rome, 00133, Italy
| | - Federica Sangiuolo
- Department of Biomedicine and Prevention, University of Rome Tor Vergata, Via Montpellier 1, Rome, 00133, Italy
| | - Steven L Neale
- James Watt School of Engineering, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Eugenio Martinelli
- Department of Electronic Engineering, University of Rome Tor Vergata, Via del Politecnico 1, Rome, 00133, Italy
- Interdisciplinary Center for Advanced Studies on Lab-on-Chip and Organ-on-Chip Applications (ICLOC), Via del Politecnico 1, Rome, 00133, Italy
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2
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Lone AW, Aydin N. Wavelet Scattering Transform based Doppler signal classification. Comput Biol Med 2023; 167:107611. [PMID: 37913613 DOI: 10.1016/j.compbiomed.2023.107611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 09/07/2023] [Accepted: 09/29/2023] [Indexed: 11/03/2023]
Abstract
Normal blood supply to the human brain may be marred by the presence of a clot inside the blood vessels. This clot structure called emboli inhibits normal blood flow to the brain. It is considered as one of the main sources of stroke. Presence of emboli in human's can be determined by the analysis of transcranial Doppler signal. Different signal processing and machine learning algorithms have been used for classifying the detected signal as an emboli, Doppler speckle, and an artifact. In this paper, we sought to make use of the wavelet transform based algorithm called Wavelet Scattering Transform, which is translation invariant and stable to deformations for classifying different Doppler signals. With its architectural resemblance to Convolutional Neural Network, Wavelet Scattering Transform works well on small datasets and subsequently was trained on a dataset consisting of 300 Doppler signals. To check the effectiveness of extracted Scattering transform based features for Doppler signal classification, learning algorithms that included multi-class Support vector machine, k-nearest neighbor and Naive Bayes algorithms were trained. Comparative analysis was done with respect to the handcrafted Continuous wavelet transform features extracted from samples and Wavelet scattering with Support vector machine achieved an accuracy of 98.89%. Also, with set of extracted scattering coefficients, Gaussian process regression was performed and a regression model was trained on three different sets of scattering coefficients with zero order scattering coefficients providing least prediction loss of 34.95%.
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Affiliation(s)
- Ab Waheed Lone
- Department of Computer Engineering, Yildiz Technical University, Istanbul, Turkey.
| | - Nizamettin Aydin
- Department of Computer Engineering, Yildiz Technical University, Istanbul, Turkey.
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3
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Warrick PA, Lostanlen V, Eickenberg M, Homsi MN, Campoy Rodriguez A, Andén J. Arrhythmia classification of 12-lead and reduced-lead electrocardiograms via recurrent networks, scattering, and phase harmonic correlation. Physiol Meas 2022; 43. [PMID: 35688143 DOI: 10.1088/1361-6579/ac77d1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 06/10/2022] [Indexed: 11/11/2022]
Abstract
We describe an automatic classifier of arrhythmias based on 12-lead and reduced-lead electrocardiograms. Our classifier comprises four modules: scattering transform (ST), phase harmonic correlation (PHC), depthwise separable convolutions (DSC), and a long short-term memory (LSTM) network. It is trained on PhysioNet/Computing in Cardiology Challenge 2021 data. The ST captures short-term temporal ECG modulations while the PHC characterizes the phase dependence of coherent ECG components. Both reduce the sampling rate to a few samples per typical heart beat. We pass the output of the ST and PHC to a depthwise-separable convolution layer (DSC) which combines lead responses separately for each ST or PHC coefficient and then combines resulting values across all coefficients. At a deeper level, two LSTM layers integrate local variations of the input over long time scales. We train in an end-to-end fashion as a multilabel classification problem with a normal and 25 arrhythmia classes. Lastly, we use canonical correlation analysis (CCA) for transfer learning from 12-lead ST and PHC representations to reduced-lead ones. After local cross-validation on the public data from the challenge, our team ``BitScattered'' achieved the following results: 0.682±0.0095 for 12-lead; 0.666±0.0257 for 6-lead; 0.674±0.0185 for 4-lead; 0.661±0.0098 for 3-lead; and 0.662±0.0151 for 2-lead.
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Affiliation(s)
- Philip A Warrick
- PeriGen, 245 Victoria, Suite 600, Montreal, Quebec, H3Z 2M6, CANADA
| | - Vincent Lostanlen
- LS2N, CNRS, École Centrale de Nantes, 1 rue de la Noë, Nantes, 44321, FRANCE
| | - Michael Eickenberg
- Flatiron Institute, 162 5th Ave, New York, New York, 10010-5902, UNITED STATES
| | - Masun Nabhan Homsi
- Department of Molecular Systems Biology, Helmholtz Centre for Environmental Research (UFZ), Permoserstraße 15, Leipzig, Sachsen, 04318, GERMANY
| | - Adrián Campoy Rodriguez
- KTH Royal Institute of Technology School of Engineering Sciences, Brinellvägen 8, 114 28, Stockholm, Stockholm, 100 44, SWEDEN
| | - Joakim Andén
- Mathematics, Division of Mathematical Statistics, KTH Royal Institute of Technology, Brinellvägen 8, 114 28, Stockholm, 100 44, SWEDEN
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4
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Automatic Events Recognition in Low SNR Microseismic Signals of Coal Mine Based on Wavelet Scattering Transform and SVM. ENERGIES 2022. [DOI: 10.3390/en15072326] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The technology of microseismic monitoring, the first step of which is event recognition, provides an effective method for giving early warning of dynamic disasters in coal mines, especially mining water hazards, while signals with a low signal-to-noise ratio (SNR) usually cannot be recognized effectively by systematic methods. This paper proposes a wavelet scattering decomposition (WSD) transform and support vector machine (SVM) algorithm for discriminating events of microseismic signals with a low SNR. Firstly, a method of signal feature extraction based on WSD transform is presented by studying the matrix constructed by the scattering decomposition coefficients. Secondly, the microseismic events intelligent recognition model built by operating a WSD coefficients calculation for the acquired raw vibration signals, shaping a feature vector matrix of them, is outlined. Finally, a comparative analysis of the microseismic events and noise signals in the experiment verifies that the discriminative features of the two can accurately be expressed by using wavelet scattering coefficients. The artificial intelligence recognition model developed based on both SVM and WSD not only provides a fast method with a high classification accuracy rate, but it also fits the online feature extraction of microseismic monitoring signals. We establish that the proposed method improves the efficiency and the accuracy of microseismic signals processing for monitoring rock instability and seismicity.
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5
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Liu GR, Sheu YC, Wu HT. Asymptotic Analysis of higher-order scattering transform of Gaussian processes. ELECTRON J PROBAB 2022. [DOI: 10.1214/22-ejp766] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Affiliation(s)
- Gi-Ren Liu
- Department of Mathematics, National Cheng-Kung University, Tainan, Taiwan
| | - Yuan-Chung Sheu
- Department of Applied Mathematics, National Yang Ming Chiao Tung University, Hsinchu, Taiwan
| | - Hau-Tieng Wu
- Department of Mathematics and Department of Statistical Science, Duke University, Durham, NC, USA
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6
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Ribeiro M, Monteiro-Santos J, Castro L, Antunes L, Costa-Santos C, Teixeira A, Henriques TS. Non-linear Methods Predominant in Fetal Heart Rate Analysis: A Systematic Review. Front Med (Lausanne) 2021; 8:661226. [PMID: 34917624 PMCID: PMC8669823 DOI: 10.3389/fmed.2021.661226] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Accepted: 11/04/2021] [Indexed: 12/19/2022] Open
Abstract
The analysis of fetal heart rate variability has served as a scientific and diagnostic tool to quantify cardiac activity fluctuations, being good indicators of fetal well-being. Many mathematical analyses were proposed to evaluate fetal heart rate variability. We focused on non-linear analysis based on concepts of chaos, fractality, and complexity: entropies, compression, fractal analysis, and wavelets. These methods have been successfully applied in the signal processing phase and increase knowledge about cardiovascular dynamics in healthy and pathological fetuses. This review summarizes those methods and investigates how non-linear measures are related to each paper's research objectives. Of the 388 articles obtained in the PubMed/Medline database and of the 421 articles in the Web of Science database, 270 articles were included in the review after all exclusion criteria were applied. While approximate entropy is the most used method in classification papers, in signal processing, the most used non-linear method was Daubechies wavelets. The top five primary research objectives covered by the selected papers were detection of signal processing, hypoxia, maturation or gestational age, intrauterine growth restriction, and fetal distress. This review shows that non-linear indices can be used to assess numerous prenatal conditions. However, they are not yet applied in clinical practice due to some critical concerns. Some studies show that the combination of several linear and non-linear indices would be ideal for improving the analysis of the fetus's well-being. Future studies should narrow the research question so a meta-analysis could be performed, probing the indices' performance.
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Affiliation(s)
- Maria Ribeiro
- Institute for Systems and Computer Engineering, Technology and Science, Porto, Portugal.,Computer Science Department, Faculty of Sciences, University of Porto, Porto, Portugal
| | - João Monteiro-Santos
- Centre for Health Technology and Services Research, Faculty of Medicine University of Porto, Porto, Portugal.,Department of Community Medicine, Information and Health Decision Sciences, Faculty of Medicine, University of Porto, Porto, Portugal
| | - Luísa Castro
- Centre for Health Technology and Services Research, Faculty of Medicine University of Porto, Porto, Portugal.,Department of Community Medicine, Information and Health Decision Sciences, Faculty of Medicine, University of Porto, Porto, Portugal.,School of Health of Polytechnic of Porto, Porto, Portugal
| | - Luís Antunes
- Institute for Systems and Computer Engineering, Technology and Science, Porto, Portugal.,Computer Science Department, Faculty of Sciences, University of Porto, Porto, Portugal
| | - Cristina Costa-Santos
- Centre for Health Technology and Services Research, Faculty of Medicine University of Porto, Porto, Portugal.,Department of Community Medicine, Information and Health Decision Sciences, Faculty of Medicine, University of Porto, Porto, Portugal
| | - Andreia Teixeira
- Centre for Health Technology and Services Research, Faculty of Medicine University of Porto, Porto, Portugal.,Department of Community Medicine, Information and Health Decision Sciences, Faculty of Medicine, University of Porto, Porto, Portugal.,Instituto Politécnico de Viana do Castelo, Viana do Castelo, Portugal
| | - Teresa S Henriques
- Centre for Health Technology and Services Research, Faculty of Medicine University of Porto, Porto, Portugal.,Department of Community Medicine, Information and Health Decision Sciences, Faculty of Medicine, University of Porto, Porto, Portugal
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7
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Pereira PMM, Thomaz LA, Tavora LMN, Assuncao PAA, Fonseca-Pinto RM, Paiva RP, Faria SMMD. Melanoma classification using light-Fields with morlet scattering transform and CNN: Surface depth as a valuable tool to increase detection rate. Med Image Anal 2021; 75:102254. [PMID: 34649195 DOI: 10.1016/j.media.2021.102254] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 07/27/2021] [Accepted: 09/22/2021] [Indexed: 11/15/2022]
Abstract
Medical image classification through learning-based approaches has been increasingly used, namely in the discrimination of melanoma. However, for skin lesion classification in general, such methods commonly rely on dermoscopic or other 2D-macro RGB images. This work proposes to exploit beyond conventional 2D image characteristics, by considering a third dimension (depth) that characterises the skin surface rugosity, which can be obtained from light-field images, such as those available in the SKINL2 dataset. To achieve this goal, a processing pipeline was deployed using a morlet scattering transform and a CNN model, allowing to perform a comparison between using 2D information, only 3D information, or both. Results show that discrimination between Melanoma and Nevus reaches an accuracy of 84.00, 74.00 or 94.00% when using only 2D, only 3D, or both, respectively. An increase of 14.29pp in sensitivity and 8.33pp in specificity is achieved when expanding beyond conventional 2D information by also using depth. When discriminating between Melanoma and all other types of lesions (a further imbalanced setting), an increase of 28.57pp in sensitivity and decrease of 1.19pp in specificity is achieved for the same test conditions. Overall the results of this work demonstrate significant improvements over conventional approaches.
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Affiliation(s)
- Pedro M M Pereira
- Instituto de Telecomunicações, Morro do Lena - Alto do Vieiro, Leiria 2411-901, Portugal; University of Coimbra, Centre for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, Pinhal de Marrocos, Coimbra 3030-290, Portugal.
| | - Lucas A Thomaz
- Instituto de Telecomunicações, Morro do Lena - Alto do Vieiro, Leiria 2411-901, Portugal; ESTG, Polytechnic of Leiria, Morro do Lena - Alto do Vieiro, Leiria 2411-901, Portugal
| | - Luis M N Tavora
- ESTG, Polytechnic of Leiria, Morro do Lena - Alto do Vieiro, Leiria 2411-901, Portugal
| | - Pedro A A Assuncao
- Instituto de Telecomunicações, Morro do Lena - Alto do Vieiro, Leiria 2411-901, Portugal; ESTG, Polytechnic of Leiria, Morro do Lena - Alto do Vieiro, Leiria 2411-901, Portugal
| | - Rui M Fonseca-Pinto
- Instituto de Telecomunicações, Morro do Lena - Alto do Vieiro, Leiria 2411-901, Portugal; ESTG, Polytechnic of Leiria, Morro do Lena - Alto do Vieiro, Leiria 2411-901, Portugal
| | - Rui Pedro Paiva
- University of Coimbra, Centre for Informatics and Systems of the University of Coimbra, Department of Informatics Engineering, Pinhal de Marrocos, Coimbra 3030-290, Portugal
| | - Sergio M M de Faria
- Instituto de Telecomunicações, Morro do Lena - Alto do Vieiro, Leiria 2411-901, Portugal; ESTG, Polytechnic of Leiria, Morro do Lena - Alto do Vieiro, Leiria 2411-901, Portugal
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8
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Roux SG, Garnier NB, Abry P, Gold N, Frasch MG. Distance to Healthy Metabolic and Cardiovascular Dynamics From Fetal Heart Rate Scale-Dependent Features in Pregnant Sheep Model of Human Labor Predicts the Evolution of Acidemia and Cardiovascular Decompensation. Front Pediatr 2021; 9:660476. [PMID: 34414140 PMCID: PMC8369259 DOI: 10.3389/fped.2021.660476] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/13/2021] [Accepted: 06/21/2021] [Indexed: 01/27/2023] Open
Abstract
The overarching goal of the present work is to contribute to the understanding of the relations between fetal heart rate (FHR) temporal dynamics and the well-being of the fetus, notably in terms of predicting the evolution of lactate, pH and cardiovascular decompensation (CVD). It makes uses of an established animal model of human labor, where 14 near-term ovine fetuses subjected to umbilical cord occlusions (UCO) were instrumented to permit regular intermittent measurements of metabolites lactate and base excess, pH, and continuous recording of electrocardiogram (ECG) and systemic arterial blood pressure (to identify CVD) during UCO. ECG-derived FHR was digitized at the sampling rate of 1,000 Hz and resampled to 4 Hz, as used in clinical routine. We focused on four FHR variability features which are tunable to temporal scales of FHR dynamics, robustly computable from FHR sampled at 4 Hz and within short-time sliding windows, hence permitting a time-dependent, or local, analysis of FHR which helps dealing with signal noise. Results show the sensitivity of the proposed features for early detection of CVD, correlation to metabolites and pH, useful for early acidosis detection and the importance of coarse time scales (2.5-8 s) which are not disturbed by the low FHR sampling rate. Further, we introduce the performance of an individualized self-referencing metric of the distance to healthy state, based on a combination of the four features. We demonstrate that this novel metric, applied to clinically available FHR temporal dynamics alone, accurately predicts the time occurrence of CVD which heralds a clinically significant degradation of the fetal health reserve to tolerate the trial of labor.
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Affiliation(s)
- Stephane G. Roux
- Laboratoire de Physique, Université Lyon, Ens de Lyon, Université Claude Bernard, CNRS, Lyon, France
| | - Nicolas B. Garnier
- Laboratoire de Physique, Université Lyon, Ens de Lyon, Université Claude Bernard, CNRS, Lyon, France
| | - Patrice Abry
- Laboratoire de Physique, Université Lyon, Ens de Lyon, Université Claude Bernard, CNRS, Lyon, France
| | - Nathan Gold
- Department of Mathematics and Statistics, York University, Toronto, ON, Canada
- Centre for Quantitative Analysis and Modelling, Fields Institute, Toronto, ON, Canada
| | - Martin G. Frasch
- Department of OBGYN, Center on Human Development and Disability, University of Washington, Seattle, WA, United States
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9
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Al-yousif S, Jaenul A, Al-Dayyeni W, Alamoodi A, Najm IA, Md Tahir N, Alrawi AAA, Cömert Z, Al-shareefi NA, Saleh AH. A systematic review of automated pre-processing, feature extraction and classification of cardiotocography. PeerJ Comput Sci 2021; 7:e452. [PMID: 33987454 PMCID: PMC8093951 DOI: 10.7717/peerj-cs.452] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 03/01/2021] [Indexed: 05/27/2023]
Abstract
CONTEXT The interpretations of cardiotocography (CTG) tracings are indeed vital to monitor fetal well-being both during pregnancy and childbirth. Currently, many studies are focusing on feature extraction and CTG classification using computer vision approach in determining the most accurate diagnosis as well as monitoring the fetal well-being during pregnancy. Additionally, a fetal monitoring system would be able to perform detection and precise quantification of fetal heart rate patterns. OBJECTIVE This study aimed to perform a systematic review to describe the achievements made by the researchers, summarizing findings that have been found by previous researchers in feature extraction and CTG classification, to determine criteria and evaluation methods to the taxonomies of the proposed literature in the CTG field and to distinguish aspects from relevant research in the field of CTG. METHODS Article search was done systematically using three databases: IEEE Xplore digital library, Science Direct, and Web of Science over a period of 5 years. The literature in the medical sciences and engineering was included in the search selection to provide a broader understanding for researchers. RESULTS After screening 372 articles, and based on our protocol of exclusion and inclusion criteria, for the final set of articles, 50 articles were obtained. The research literature taxonomy was divided into four stages. The first stage discussed the proposed method which presented steps and algorithms in the pre-processing stage, feature extraction and classification as well as their use in CTG (20/50 papers). The second stage included the development of a system specifically on automatic feature extraction and CTG classification (7/50 papers). The third stage consisted of reviews and survey articles on automatic feature extraction and CTG classification (3/50 papers). The last stage discussed evaluation and comparative studies to determine the best method for extracting and classifying features with comparisons based on a set of criteria (20/50 articles). DISCUSSION This study focused more on literature compared to techniques or methods. Also, this study conducts research and identification of various types of datasets used in surveys from publicly available, private, and commercial datasets. To analyze the results, researchers evaluated independent datasets using different techniques. CONCLUSIONS This systematic review contributes to understand and have insight into the relevant research in the field of CTG by surveying and classifying pertinent research efforts. This review will help to address the current research opportunities, problems and challenges, motivations, recommendations related to feature extraction and CTG classification, as well as the measurement of various performance and various data sets used by other researchers.
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Affiliation(s)
- Shahad Al-yousif
- Department of Medical Instrumentations Engineering Techniques, Dijlah University, Baghdad, Iraq
- Faculty of Information Science & Engineering, Management and Science University, Shah Alam, Selangoor, Malaysia
| | - Ariep Jaenul
- Department of Electrical Engineering, Faculty of Engineering and Computer Science, Jakarta Global University, Jakarta, Indonesia
| | - Wisam Al-Dayyeni
- Department of Medical Instrumentations Engineering Techniques, Dijlah University, Baghdad, Iraq
| | - Ah Alamoodi
- Department of Computing, Universiti Pendidikan Sultan Idris, Tanjong Malim, Perak, Malaysia
| | - IA Najm
- Faculty of Engineering, Tikrit University, Tikrit, Iraq
| | - Nooritawati Md Tahir
- Faculty of Electrical Engineering, Universiti Teknologi MARA (UiTM), Shah Alam, Selangor, Malaysia
| | - Ali Amer Ahmed Alrawi
- Training Directorate, Ministry of Science and Technology, Baghdad, Aljadireyah, Iraq
| | - Zafer Cömert
- Department of Software Engineering, Samsun University, Samsun, Turkey
| | - Nael A. Al-shareefi
- College of Biomedical Informatics, University of Information Technology and Communications (UOITC), Baghdad, Almansoor, Iraq
| | - Abbadullah H. Saleh
- Department Computer Engineering, Karabük University,, Karabük, Karabük, Turkey
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10
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Chiera M, Cerritelli F, Casini A, Barsotti N, Boschiero D, Cavigioli F, Corti CG, Manzotti A. Heart Rate Variability in the Perinatal Period: A Critical and Conceptual Review. Front Neurosci 2020; 14:561186. [PMID: 33071738 PMCID: PMC7544983 DOI: 10.3389/fnins.2020.561186] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Accepted: 08/28/2020] [Indexed: 12/18/2022] Open
Abstract
Neonatal intensive care units (NICUs) greatly expand the use of technology. There is a need to accurately diagnose discomfort, pain, and complications, such as sepsis, mainly before they occur. While specific treatments are possible, they are often time-consuming, invasive, or painful, with detrimental effects for the development of the infant. In the last 40 years, heart rate variability (HRV) has emerged as a non-invasive measurement to monitor newborns and infants, but it still is underused. Hence, the present paper aims to review the utility of HRV in neonatology and the instruments available to assess it, showing how HRV could be an innovative tool in the years to come. When continuously monitored, HRV could help assess the baby’s overall wellbeing and neurological development to detect stress-/pain-related behaviors or pathological conditions, such as respiratory distress syndrome and hyperbilirubinemia, to address when to perform procedures to reduce the baby’s stress/pain and interventions, such as therapeutic hypothermia, and to avoid severe complications, such as sepsis and necrotizing enterocolitis, thus reducing mortality. Based on literature and previous experiences, the first step to efficiently introduce HRV in the NICUs could consist in a monitoring system that uses photoplethysmography, which is low-cost and non-invasive, and displays one or a few metrics with good clinical utility. However, to fully harness HRV clinical potential and to greatly improve neonatal care, the monitoring systems will have to rely on modern bioinformatics (machine learning and artificial intelligence algorithms), which could easily integrate infant’s HRV metrics, vital signs, and especially past history, thus elaborating models capable to efficiently monitor and predict the infant’s clinical conditions. For this reason, hospitals and institutions will have to establish tight collaborations between the obstetric, neonatal, and pediatric departments: this way, healthcare would truly improve in every stage of the perinatal period (from conception to the first years of life), since information about patients’ health would flow freely among different professionals, and high-quality research could be performed integrating the data recorded in those departments.
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Affiliation(s)
- Marco Chiera
- Research and Assistance for Infants to Support Experience Lab, Foundation Center for Osteopathic Medicine Collaboration, Pescara, Italy.,Research Commission on Manual Therapies and Mind-Body Disciplines, Societ Italiana di Psico Neuro Endocrino Immunologia, Rome, Italy
| | - Francesco Cerritelli
- Research and Assistance for Infants to Support Experience Lab, Foundation Center for Osteopathic Medicine Collaboration, Pescara, Italy
| | - Alessandro Casini
- Research and Assistance for Infants to Support Experience Lab, Foundation Center for Osteopathic Medicine Collaboration, Pescara, Italy
| | - Nicola Barsotti
- Research and Assistance for Infants to Support Experience Lab, Foundation Center for Osteopathic Medicine Collaboration, Pescara, Italy.,Research Commission on Manual Therapies and Mind-Body Disciplines, Societ Italiana di Psico Neuro Endocrino Immunologia, Rome, Italy
| | | | - Francesco Cavigioli
- Neonatal Intensive Care Unit, "V. Buzzi" Children's Hospital, Azienda Socio Sanitaria Territoriale Fatebenefratelli-Sacco, Milan, Italy
| | - Carla G Corti
- Pediatric Cardiology Unit-Pediatric Department, Azienda Socio Sanitaria Territoriale Fatebenefratelli-Sacco, Milan, Italy
| | - Andrea Manzotti
- Research and Assistance for Infants to Support Experience Lab, Foundation Center for Osteopathic Medicine Collaboration, Pescara, Italy.,Neonatal Intensive Care Unit, "V. Buzzi" Children's Hospital, Azienda Socio Sanitaria Territoriale Fatebenefratelli-Sacco, Milan, Italy.,Research Department, SOMA, Istituto Osteopatia Milano, Milan, Italy
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11
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Alsayyari A. Fetal cardiotocography monitoring using Legendre neural networks. ACTA ACUST UNITED AC 2020; 64:669-675. [PMID: 31199757 DOI: 10.1515/bmt-2018-0074] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2018] [Accepted: 10/18/2018] [Indexed: 11/15/2022]
Abstract
A new technique for electronic fetal monitoring (EFM) using an efficient structure of neural networks based on the Legendre series is presented in this paper. Such a structure is achieved by training a Legendre series-based neural network (LNN) to classify the different fetal states based on recorded cardiotocographic (CTG) data sets given by others. These data sets consist of measurements of fetal heart rate (FHR) and uterine contraction (UC). The applied LNN utilizes a Legendre series expansion for the input vectors and, hence, has the capability to produce explicit equations describing multi-input multi-output systems. Simulations of the proposed technique in EFM demonstrate its high efficiency. Training the LNN requires a few number of iterations (5-10 epochs). The applied technique makes the classification of the fetal state available through equations combining the trained LNN weights and the current measured CTG record. A comparison of performance between the proposed LNN and other popular neural network techniques such as the Volterra neural network (VNN) in EFM is provided. The comparison shows that, the LNN outperforms the VNN in case of less computational requirements and fast convergence with a lower mean square error.
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Affiliation(s)
- Abdulaziz Alsayyari
- Computer Engineering Department, Shaqra University, Dawadmi 11911, Ar Riyadh, Saudi Arabia
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Warrick PA, Lostanlen V, Nabhan Homsi M. Hybrid scattering-LSTM networks for automated detection of sleep arousals. Physiol Meas 2019; 40:074001. [PMID: 31158822 DOI: 10.1088/1361-6579/ab2664] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
OBJECTIVE Early detection of sleep arousal in polysomnographic (PSG) signals is crucial for monitoring or diagnosing sleep disorders and reducing the risk of further complications, including heart disease and blood pressure fluctuations. APPROACH In this paper, we present a new automatic detector of non-apnea arousal regions in multichannel PSG recordings. This detector cascades four different modules: a second-order scattering transform (ST) with Morlet wavelets; depthwise-separable convolutional layers; bidirectional long short-term memory (BiLSTM) layers; and dense layers. While the first two are shared across all channels, the latter two operate in a multichannel formulation. Following a deep learning paradigm, the whole architecture is trained in an end-to-end fashion in order to optimize two objectives: the detection of arousal onset and offset, and the classification of the type of arousal. Main results and Significance: The novelty of the approach is three-fold: it is the first use of a hybrid ST-BiLSTM network with biomedical signals; it captures frequency information lower (0.1 Hz) than the detection sampling rate (0.5 Hz); and it requires no explicit mechanism to overcome class imbalance in the data. In the follow-up phase of the 2018 PhysioNet/CinC Challenge the proposed architecture achieved a state-of-the-art area under the precision-recall curve (AUPRC) of 0.50 on the hidden test data, tied for the second-highest official result overall.
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Georgieva A, Abry P, Chudáček V, Djurić PM, Frasch MG, Kok R, Lear CA, Lemmens SN, Nunes I, Papageorghiou AT, Quirk GJ, Redman CWG, Schifrin B, Spilka J, Ugwumadu A, Vullings R. Computer-based intrapartum fetal monitoring and beyond: A review of the 2nd Workshop on Signal Processing and Monitoring in Labor (October 2017, Oxford, UK). Acta Obstet Gynecol Scand 2019; 98:1207-1217. [PMID: 31081113 DOI: 10.1111/aogs.13639] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2019] [Accepted: 05/08/2019] [Indexed: 12/30/2022]
Abstract
The second Signal Processing and Monitoring in Labor workshop gathered researchers who utilize promising new research strategies and initiatives to tackle the challenges of intrapartum fetal monitoring. The workshop included a series of lectures and discussions focusing on: new algorithms and techniques for cardiotocogoraphy (CTG) and electrocardiogram acquisition and analyses; the results of a CTG evaluation challenge comparing state-of-the-art computerized methods and visual interpretation for the detection of arterial cord pH <7.05 at birth; the lack of consensus about the role of intrapartum acidemia in the etiology of fetal brain injury; the differences between methods for CTG analysis "mimicking" expert clinicians and those derived from "data-driven" analyses; a critical review of the results from two randomized controlled trials testing the former in clinical practice; and relevant insights from modern physiology-based studies. We concluded that the automated algorithms performed comparably to each other and to clinical assessment of the CTG. However, the sensitivity and specificity urgently need to be improved (both computerized and visual assessment). Data-driven CTG evaluation requires further work with large multicenter datasets based on well-defined labor outcomes. And before first tests in the clinic, there are important lessons to be learnt from clinical trials that tested automated algorithms mimicking expert CTG interpretation. In addition, transabdominal fetal electrocardiogram monitoring provides reliable CTG traces and variability estimates; and fetal electrocardiogram waveform analysis is subject to promising new research. There is a clear need for close collaboration between computing and clinical experts. We believe that progress will be possible with multidisciplinary collaborative research.
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Affiliation(s)
- Antoniya Georgieva
- Nuffield Department of Women's and Reproductive Health, Big Data Institute, University of Oxford, Oxford, UK
| | - Patrice Abry
- University of Lyon, Ens de Lyon, University Claude Bernard, CNRS, Laboratoire de Physique, Lyon, France
| | - Václav Chudáček
- CIIRC, Czech Technical University in Prague, Prague, Czech Republic
| | - Petar M Djurić
- Electrical and Computer Engineering, Stony Brook University, Stony Brook, NY, USA
| | - Martin G Frasch
- Department of Obstetrics and Gynecology, University of Washington, Seattle, WA, USA
| | - René Kok
- Nemo Healthcare, Veldhoven, the Netherlands
| | | | | | - Inês Nunes
- Department of Obstetrics and Gynecology, Centro Materno-Infantil do Norte-Centro Hospitalar do Porto, Instituto de Ciências Biomédicas Abel Salazar, Centro de Investigação em Tecnologias e Serviços de Saúde, Instituto de Investigação e Inovação em Saúde, University of Porto, Porto, Portugal
| | - Aris T Papageorghiou
- Nuffield Department of Women's and Reproductive Health, University of Oxford, Oxford, UK
| | - Gerald J Quirk
- Department of Obstetrics and Gynecology at Stony Brook University Medical Center, Stony Brook, NY, USA
| | - Christopher W G Redman
- Nuffield Department of Women's and Reproductive Health, University of Oxford, Oxford, UK
| | | | - Jiri Spilka
- CIIRC, Czech Technical University in Prague, Prague, Czech Republic
| | - Austin Ugwumadu
- Department of Obstetrics & Gynecology, St. George's University of London, London, UK
| | - Rik Vullings
- Department of Electrical Engineering, Eindhoven University of Technology, Eindhoven, the Netherlands
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Attuel G, Gerasimova-Chechkina E, Argoul F, Yahia H, Arneodo A. Multifractal Desynchronization of the Cardiac Excitable Cell Network During Atrial Fibrillation. II. Modeling. Front Physiol 2019; 10:480. [PMID: 31105585 PMCID: PMC6492055 DOI: 10.3389/fphys.2019.00480] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2018] [Accepted: 04/05/2019] [Indexed: 11/13/2022] Open
Abstract
In a companion paper (I. Multifractal analysis of clinical data), we used a wavelet-based multiscale analysis to reveal and quantify the multifractal intermittent nature of the cardiac impulse energy in the low frequency range ≲ 2Hz during atrial fibrillation (AF). It demarcated two distinct areas within the coronary sinus (CS) with regionally stable multifractal spectra likely corresponding to different anatomical substrates. The electrical activity also showed no sign of the kind of temporal correlations typical of cascading processes across scales, thereby indicating that the multifractal scaling is carried by variations in the large amplitude oscillations of the recorded bipolar electric potential. In the present study, to account for these observations, we explore the role of the kinetics of gap junction channels (GJCs), in dynamically creating a new kind of imbalance between depolarizing and repolarizing currents. We propose a one-dimensional (1D) spatial model of a denervated myocardium, where the coupling of cardiac cells fails to synchronize the network of cardiac cells because of abnormal transjunctional capacitive charging of GJCs. We show that this non-ohmic nonlinear conduction 1D modeling accounts quantitatively well for the "multifractal random noise" dynamics of the electrical activity experimentally recorded in the left atrial posterior wall area. We further demonstrate that the multifractal properties of the numerical impulse energy are robust to changes in the model parameters.
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Affiliation(s)
- Guillaume Attuel
- Geometry and Statistics in Acquisition Data, Centre de Recherche INRIA, Talence, France
| | | | - Françoise Argoul
- Laboratoire Ondes et Matières d'Aquitaine, Université de Bordeaux, UMR 5798, CNRS, Talence, France
| | - Hussein Yahia
- Geometry and Statistics in Acquisition Data, Centre de Recherche INRIA, Talence, France
| | - Alain Arneodo
- Laboratoire Ondes et Matières d'Aquitaine, Université de Bordeaux, UMR 5798, CNRS, Talence, France
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Wendt H, Abry P, Kiyono K, Hayano J, Watanabe E, Yamamoto Y. Wavelet p-Leader Non Gaussian Multiscale Expansions for Heart Rate Variability Analysis in Congestive Heart Failure Patients. IEEE Trans Biomed Eng 2018; 66:80-88. [PMID: 29993421 DOI: 10.1109/tbme.2018.2825500] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
OBJECTIVE Numerous indices were devised for the statistical characterization of temporal dynamics of heart rate variability (HRV) with the aim to discriminate between healthy subjects and nonhealthy patients. Elaborating on the concepts of (multi)fractal and nonlinear analyses, the present contribution defines and studies formally novel non Gaussian multiscale representations. METHODS A methodological framework for non Gaussian multiscale representations constructed on wavelet p-leaders is developed, relying a priori neither on exact scale-free dynamics nor on predefined forms of departure from Gaussianity. Its versatility in quantifying the strength and nature of departure from Gaussian is analyzed theoretically and numerically. The ability of the representations to discriminate between healthy subjects and congestive heart failure (CHF) patients, and between survivors and nonsurvivor CHF patients, is assessed on a large cohort of 198 subjects. RESULTS The analysis leads to conclude that i) scale-free and multifractal dynamics are observed, both for healthy subjects and CHF patients, for time scales shorter than [Formula: see text]; ii) a circadian evolution of multifractal and non Gaussian properties of HRV is evidenced for healthy subjects, but not for CHF patients; iii) non Gaussian multiscale indices possess high discriminative abilities between survivor and nonsurvivor CHF patients, at specific time scales ([Formula: see text] and [Formula: see text]). CONCLUSIONS The non Gaussian multiscale representations provide evidence for the existence of short-term cascade-type multifractal mechanisms underlying HRV for both healthy and CHF subjects. A circadian evolution of this mechanism is only evidenced for the healthy group, suggesting an alteration of the sympathetic-parasympathetic balance for CHF patients. SIGNIFICANCE Results obtained for a large cohort of subjects suggest that the novel non Gaussian indices might robustly quantify crucial information for clinical risk stratification in CHF patients.
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A Comprehensive Evaluation of the Predictive Abilities of Fetal Electrocardiogram-Derived Parameters during Labor in Newborn Acidemia: Our Institutional Experience. BIOMED RESEARCH INTERNATIONAL 2018; 2018:3478925. [PMID: 29888259 PMCID: PMC5985095 DOI: 10.1155/2018/3478925] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2017] [Revised: 03/20/2018] [Accepted: 04/17/2018] [Indexed: 11/17/2022]
Abstract
This study aimed to identify cardiotocography patterns that discriminate fetal acidemia newborns by comprehensively evaluating the parameters obtained from Holter monitoring during delivery. Between June 1, 2015, and August 1, 2016, a prospective observational study of 85 patients was conducted using fetal Holter monitoring at the Beijing Obstetrics and Gynecology Hospital, Capital Medical University, China. Umbilical cord blood was sampled immediately after delivery and fetal acidemia was defined as umbilical cord arterial blood pH < 7.20. Fetal electrocardiogram- (FECG-) derived parameters, including basal fetal heart rate (BFHR), short-term variation (STV), large acceleration (LA), deceleration capacity (DC), acceleration capacity (AC), proportion of episodes of high variation (PEHV), and proportion of episodes of low variation (PELV), were compared between 16 fetuses with acidemia and 47 without. The areas under the curve (AUC) of receiver operating characteristics (ROC) were calculated. Although all the computerized parameters showed predictive values for acidemia (all AUC > 0.50), STV (AUC = 0.84, P < 0.001), DC (AUC = 0.84, P < 0.001), AC (AUC = 0.80, P < 0.001), and PELV (AUC = 0.71, P = 0.012) were more strongly associated with fetal acidemia. Our institutional experience suggests that FECG-derived parameters from Holter monitoring are beneficial in reducing the incidence of neonatal acidemia.
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Abry P, Spilka J, Leonarduzzi R, Chudáček V, Pustelnik N, Doret M. Sparse learning for Intrapartum fetal heart rate analysis. Biomed Phys Eng Express 2018. [DOI: 10.1088/2057-1976/aabc64] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Attuel G, Gerasimova-Chechkina E, Argoul F, Yahia H, Arneodo A. Multifractal Desynchronization of the Cardiac Excitable Cell Network During Atrial Fibrillation. I. Multifractal Analysis of Clinical Data. Front Physiol 2018; 8:1139. [PMID: 29632492 PMCID: PMC5880174 DOI: 10.3389/fphys.2017.01139] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2017] [Accepted: 12/24/2017] [Indexed: 12/19/2022] Open
Abstract
Atrial fibrillation (AF) is a cardiac arrhythmia characterized by rapid and irregular atrial electrical activity with a high clinical impact on stroke incidence. Best available therapeutic strategies combine pharmacological and surgical means. But when successful, they do not always prevent long-term relapses. Initial success becomes all the more tricky to achieve as the arrhythmia maintains itself and the pathology evolves into sustained or chronic AF. This raises the open crucial issue of deciphering the mechanisms that govern the onset of AF as well as its perpetuation. In this study, we develop a wavelet-based multi-scale strategy to analyze the electrical activity of human hearts recorded by catheter electrodes, positioned in the coronary sinus (CS), during episodes of AF. We compute the so-called multifractal spectra using two variants of the wavelet transform modulus maxima method, the moment (partition function) method and the magnitude cumulant method. Application of these methods to long time series recorded in a patient with chronic AF provides quantitative evidence of the multifractal intermittent nature of the electric energy of passing cardiac impulses at low frequencies, i.e., for times (≳0.5 s) longer than the mean interbeat (≃ 10-1 s). We also report the results of a two-point magnitude correlation analysis which infers the absence of a multiplicative time-scale structure underlying multifractal scaling. The electric energy dynamics looks like a "multifractal white noise" with quadratic (log-normal) multifractal spectra. These observations challenge concepts of functional reentrant circuits in mechanistic theories of AF, still leaving open the role of the autonomic nervous system (ANS). A transition is indeed observed in the computed multifractal spectra which group according to two distinct areas, consistently with the anatomical substrate binding to the CS, namely the left atrial posterior wall, and the ligament of Marshall which is innervated by the ANS. In a companion paper (II. Modeling), we propose a mathematical model of a denervated heart where the kinetics of gap junction conductance alone induces a desynchronization of the myocardial excitable cells, accounting for the multifractal spectra found experimentally in the left atrial posterior wall area.
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Affiliation(s)
- Guillaume Attuel
- Geometry and Statistics in Acquisition Data, Centre de Recherche INRIA, Talence, France
| | | | - Francoise Argoul
- Laboratoire Ondes et Matières d'Aquitaine, Université de Bordeaux, Centre National de la Recherche Scientifique, UMR 5798, Talence, France
| | - Hussein Yahia
- Geometry and Statistics in Acquisition Data, Centre de Recherche INRIA, Talence, France
| | - Alain Arneodo
- Laboratoire Ondes et Matières d'Aquitaine, Université de Bordeaux, Centre National de la Recherche Scientifique, UMR 5798, Talence, France
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Warmerdam GJJ, Vullings R, Van Laar JOEH, Van der Hout-Van der Jagt MB, Bergmans JWM, Schmitt L, Oei SG. Detection rate of fetal distress using contraction-dependent fetal heart rate variability analysis. Physiol Meas 2018; 39:025008. [PMID: 29350194 DOI: 10.1088/1361-6579/aaa925] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
OBJECTIVE Monitoring of the fetal condition during labor is currently performed by cardiotocograpy (CTG). Despite the use of CTG in clinical practice, CTG interpretation suffers from a high inter- and intra-observer variability and a low specificity. In addition to CTG, analysis of fetal heart rate variability (HRV) has been shown to provide information on fetal distress. However, fetal HRV can be strongly influenced by uterine contractions, particularly during the second stage of labor. Therefore, the aim of this study is to examine if distinguishing contractions from rest periods can improve the detection rate of HRV features for fetal distress during the second stage of labor. APPROACH We used a dataset of 100 recordings, containing 20 cases of fetuses with adverse outcome. The most informative HRV features were selected by a genetic algorithm and classification performance was evaluated using support vector machines. MAIN RESULTS Classification performance of fetal heart rate segments closest to birth improved from a geometric mean of 70% to 79%. If the classifier was used to indicate fetal distress over time, the geometric mean at 15 minutes before birth improved from 60% to 72%. SIGNIFICANCE Our results show that combining contraction-dependent HRV features with HRV features calculated over the entire fetal heart rate signal improves the detection rate of fetal distress.
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Affiliation(s)
- G J J Warmerdam
- Faculty of Electrical Engineering, Eindhoven University of Technology, Eindhoven, Netherlands
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Granero-Belinchon C, Roux SG, Garnier NB, Abry P, Doret M. Mutual information for intrapartum fetal heart rate analysis. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2017; 2017:2014-2017. [PMID: 29060291 DOI: 10.1109/embc.2017.8037247] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
The analysis of the temporal dynamics in intrapartum fetal heart rate (FHR), aiming at early detection of fetal acidosis, constitutes an intricate signal processing task, that continuously receives significant research efforts. Entropy and entropy rates, envisaged as measures of complexity, often computed via popular implementations referred to as Approximate Entropy (ApEn) or Sample Entropy (SampEn), have regularly been reported as significant features for intrapartum FHR analysis. The present contribution aims to show how mutual information enhances characterization of FHR temporal dynamics and improves fetal acidosis detection performance. To that end, mutual information is first connected to ApEn and SampEn both conceptually and with respect to estimation procedure. Second, mutual information, ApEn and SampEn are computed on a large (≃ 1000 subjects) and documented database of FHR data, collected in a French academic hospital. Reported results show that the use of mutual information permits to significantly outperform ApEn and SampEn for acidosis detection, during any stage of labor.
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Castellanos NP, Godinez R. Simulating the extrinsic regulation of the sinoatrial node cells using a unified computational model. Biomed Phys Eng Express 2017. [DOI: 10.1088/2057-1976/aa6bff] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Clark SL, Hamilton EF, Garite TJ, Timmins A, Warrick PA, Smith S. The limits of electronic fetal heart rate monitoring in the prevention of neonatal metabolic acidemia. Am J Obstet Gynecol 2017; 216:163.e1-163.e6. [PMID: 27751795 DOI: 10.1016/j.ajog.2016.10.009] [Citation(s) in RCA: 91] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2016] [Revised: 09/29/2016] [Accepted: 10/06/2016] [Indexed: 10/20/2022]
Abstract
BACKGROUND Despite intensive efforts directed at initial training in fetal heart rate interpretation, continuing medical education, board certification/recertification, team training, and the development of specific protocols for the management of abnormal fetal heart rate patterns, the goals of consistently preventing hypoxia-induced fetal metabolic acidemia and neurologic injury remain elusive. OBJECTIVE The purpose of this study was to validate a recently published algorithm for the management of category II fetal heart rate tracings, to examine reasons for the birth of infants with significant metabolic acidemia despite the use of electronic fetal heart rate monitoring, and to examine critically the limits of electronic fetal heart rate monitoring in the prevention of neonatal metabolic acidemia. STUDY DESIGN The potential performance of electronic fetal heart rate monitoring under ideal circumstances was evaluated in an outcomes-blinded examination fetal heart rate tracing of infants with metabolic acidemia at birth (base deficit, >12) and matched control infants (base deficit, <8) under the following conditions: (1) expert primary interpretation, (2) use of a published algorithm that was developed and endorsed by a large group of national experts, (3) assumption of a 30-minute period of evaluation for noncritical category II fetal heart rate tracings, followed by delivery within 30 minutes, (4) evaluation without the need to provide patient care simultaneously, and (5) comparison of results under these circumstances with those achieved in actual clinical practice. RESULTS During the study period, 120 infants were identified with an arterial cord blood base deficit of >12 mM/L. Matched control infants were not demographically different from subjects. In actual practice, operative intervention on the basis of an abnormal fetal heart rate tracings occurred in 36 of 120 fetuses (30.0%) with metabolic acidemia. Based on expert, algorithm-assisted reviews, 55 of 120 patients with acidemia (45.8%) were judged to need operative intervention for abnormal fetal heart rate tracings. This difference was significant (P=.016). In infants who were born with a base deficit of >12 mM/L in which blinded, algorithm-assisted expert review indicated the need for operative delivery, the decision for delivery would have been made an average of 131 minutes before the actual delivery. The rate of expert intervention for fetal heart rate concerns in the nonacidemic control group (22/120; 18.3%) was similar to the actual intervention rate (23/120; 19.2%; P=1.0) Expert review did not mandate earlier delivery in 65 of 120 patients with metabolic acidemia. The primary features of these 65 cases included the occurrence of sentinel events with prolonged deceleration just before delivery, the rapid deterioration of nonemergent category II fetal heart rate tracings before realistic time frames for recognition and intervention, and the failure of recognized fetal heart rate patterns such as variability to identify metabolic acidemia. CONCLUSIONS Expert, algorithm-assisted fetal heart rate interpretation has the potential to improve standard clinical performance by facilitating significantly earlier recognition of some tracings that are associated with metabolic acidemia without increasing the rate of operative intervention. However, this improvement is modest. Of infants who are born with metabolic acidemia, only approximately one-half potentially could be identified and have delivery expedited even under ideal circumstances, which are probably not realistic in current US practice. This represents the limits of electronic fetal heart rate monitoring performance. Additional technologies will be necessary if the goal of the prevention of neonatal metabolic acidemia is to be realized.
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Spilka J, Frecon J, Leonarduzzi R, Pustelnik N, Abry P, Doret M. Sparse Support Vector Machine for Intrapartum Fetal Heart Rate Classification. IEEE J Biomed Health Inform 2016; 21:664-671. [PMID: 27046884 DOI: 10.1109/jbhi.2016.2546312] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Fetal heart rate (FHR) monitoring is routinely used in clinical practice to help obstetricians assess fetal health status during delivery. However, early detection of fetal acidosis that allows relevant decisions for operative delivery remains a challenging task, receiving considerable attention. This contribution promotes sparse support vector machine classification that permits to select a small number of relevant features and to achieve efficient fetal acidosis detection. A comprehensive set of features is used for FHR description, including enhanced and computerized clinical features, frequency domain, and scaling and multifractal features, all computed on a large (1288 subjects) and well-documented database. The individual performance obtained for each feature independently is discussed first. Then, it is shown that the automatic selection of a sparse subset of features achieves satisfactory classification performance (sensitivity 0.73 and specificity 0.75, outperforming clinical practice). The subset of selected features (average depth of decelerations MADdtrd, baseline level β0 , and variability H) receives simple interpretation in clinical practice. Intrapartum fetal acidosis detection is improved in several respects: A comprehensive set of features combining clinical, spectral, and scale-free dynamics is used; an original multivariate classification targeting both sparse feature selection and high performance is devised; state-of-the-art performance is obtained on a much larger database than that generally studied with description of common pitfalls in supervised classification performance assessments.
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Affiliation(s)
- Jiri Spilka
- CNRS, Laboratoire de Physique, Claude Bernard University Lyon 1, Lyon, France
| | - Jordan Frecon
- CNRS, Laboratoire de Physique, Claude Bernard University Lyon 1, Lyon, France
| | - Roberto Leonarduzzi
- CNRS, Laboratoire de Physique, Claude Bernard University Lyon 1, Lyon, France
| | - Nelly Pustelnik
- CNRS, Laboratoire de Physique, Claude Bernard University Lyon 1, Lyon, France
| | - Patrice Abry
- CNRS, Laboratoire de Physique, Claude Bernard University Lyon 1, Lyon, France
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Warmerdam GJJ, Vullings R, Van Laar JOEH, Van der Hout-Van der Jagt MB, Bergmans JWM, Schmitt L, Oei SG. Using uterine activity to improve fetal heart rate variability analysis for detection of asphyxia during labor. Physiol Meas 2016; 37:387-400. [PMID: 26862891 DOI: 10.1088/0967-3334/37/3/387] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
During labor, uterine contractions can cause temporary oxygen deficiency for the fetus. In case of severe and prolonged oxygen deficiency this can lead to asphyxia. The currently used technique for detection of asphyxia, cardiotocography (CTG), suffers from a low specificity. Recent studies suggest that analysis of fetal heart rate variability (HRV) in addition to CTG can provide information on fetal distress. However, interpretation of fetal HRV during labor is difficult due to the influence of uterine contractions on fetal HRV. The aim of this study is therefore to investigate whether HRV features differ during contraction and rest periods, and whether these differences can improve the detection of asphyxia. To this end, a case-control study was performed, using 14 cases with asphyxia that were matched with 14 healthy fetuses. We did not find significant differences for individual HRV features when calculated over the fetal heart rate without separating contractions and rest periods (p > 0.30 for all HRV features). Separating contractions from rest periods did result in a significant difference. In particular the ratio between HRV features calculated during and outside contractions can improve discrimination between fetuses with and without asphyxia (p < 0.04 for three out of four ratio HRV features that were studied in this paper).
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Affiliation(s)
- G J J Warmerdam
- Faculty of Electrical Engineering, Eindhoven University of Technology, 5612 AZ Eindhoven, The Netherlands
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Spilka J, Frecon J, Leonarduzzi R, Pustelnik N, Abry P, Doret M. Intrapartum fetal heart rate classification from trajectory in Sparse SVM feature space. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2016; 2015:2335-8. [PMID: 26736761 DOI: 10.1109/embc.2015.7318861] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Intrapartum fetal heart rate (FHR) constitutes a prominent source of information for the assessment of fetal reactions to stress events during delivery. Yet, early detection of fetal acidosis remains a challenging signal processing task. The originality of the present contribution are three-fold: multiscale representations and wavelet leader based multifractal analysis are used to quantify FHR variability ; Supervised classification is achieved by means of Sparse-SVM that aim jointly to achieve optimal detection performance and to select relevant features in a multivariate setting ; Trajectories in the feature space accounting for the evolution along time of features while labor progresses are involved in the construction of indices quantifying fetal health. The classification performance permitted by this combination of tools are quantified on a intrapartum FHR large database (≃ 1250 subjects) collected at a French academic public hospital.
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Doret M, Spilka J, Chudáček V, Gonçalves P, Abry P. Fractal Analysis and Hurst Parameter for Intrapartum Fetal Heart Rate Variability Analysis: A Versatile Alternative to Frequency Bands and LF/HF Ratio. PLoS One 2015; 10:e0136661. [PMID: 26322889 PMCID: PMC4556442 DOI: 10.1371/journal.pone.0136661] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2015] [Accepted: 08/06/2015] [Indexed: 11/18/2022] Open
Abstract
Background The fetal heart rate (FHR) is commonly monitored during labor to detect early fetal acidosis. FHR variability is traditionally investigated using Fourier transform, often with adult predefined frequency band powers and the corresponding LF/HF ratio. However, fetal conditions differ from adults and modify spectrum repartition along frequencies. Aims This study questions the arbitrariness definition and relevance of the frequency band splitting procedure, and thus of the calculation of the underlying LF/HF ratio, as efficient tools for characterizing intrapartum FHR variability. Study Design The last 30 minutes before delivery of the intrapartum FHR were analyzed. Subjects Case-control study. A total of 45 singletons divided into two groups based on umbilical cord arterial pH: the Index group with pH ≤ 7.05 (n = 15) and Control group with pH > 7.05 (n = 30). Outcome Measures Frequency band-based LF/HF ratio and Hurst parameter. Results This study shows that the intrapartum FHR is characterized by fractal temporal dynamics and promotes the Hurst parameter as a potential marker of fetal acidosis. This parameter preserves the intuition of a power frequency balance, while avoiding the frequency band splitting procedure and thus the arbitrary choice of a frequency separating bands. The study also shows that extending the frequency range covered by the adult-based bands to higher and lower frequencies permits the Hurst parameter to achieve better performance for identifying fetal acidosis. Conclusions The Hurst parameter provides a robust and versatile tool for quantifying FHR variability, yields better acidosis detection performance compared to the LF/HF ratio, and avoids arbitrariness in spectral band splitting and definitions.
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Affiliation(s)
- Muriel Doret
- Department of Obstetrics and Gynaecology, Hospices Civils de Lyon, Hôpital Femme-Mère-Enfant, Bron, France
- * E-mail:
| | - Jiří Spilka
- Physics Department, CNRS, ENS Lyon, France
- Czech Institute of Informatics, Robotics and Cybernetics, Czech Technical University in Prague, Prague, Czech Republic
| | - Václav Chudáček
- Czech Institute of Informatics, Robotics and Cybernetics, Czech Technical University in Prague, Prague, Czech Republic
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Gavrilis D, Nikolakopoulos G, Georgoulas G. A one-class approach to cardiotocogram assessment. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2015; 2015:518-521. [PMID: 26736313 DOI: 10.1109/embc.2015.7318413] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Cardiotocogram (CTG) is the most widely used means for the assessment of fetal condition. CTG consists of two traces one depicting the Fetal Heart Rate (FHR), and the other the Uterine Contractions (UC) activity. Many automatic methods have been proposed for the interpretation of the CTG. Most of them rely either on a binary classification approach or on a multiclass approach to come up with a decision about the class that the tracing belongs to. This work investigates the use of a one-class approach to the assessment of CTGs building a model only for the healthy data. The preliminary results are promising indicating that normal traces could be used as part of an automatic system that can detect deviations from normality.
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29
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Hruban L, Spilka J, Chudáček V, Janků P, Huptych M, Burša M, Hudec A, Kacerovský M, Koucký M, Procházka M, Korečko V, Seget'a J, Šimetka O, Měchurová A, Lhotská L. Agreement on intrapartum cardiotocogram recordings between expert obstetricians. J Eval Clin Pract 2015; 21:694-702. [PMID: 26011725 DOI: 10.1111/jep.12368] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 03/10/2015] [Indexed: 12/26/2022]
Abstract
RATIONALE, AIMS AND OBJECTIVES To evaluate obstetricians' inter- and intra-observer agreement on intrapartum cardiotocogram (CTG) recordings and to examine obstetricians' evaluations with respect to umbilical artery pH and base deficit. METHODS Nine experienced obstetricians annotated 634 intrapartum CTG recordings. The evaluation of each recording was divided into four steps: evaluation of two 30-minute windows in the first stage of labour, evaluation of one window in the second stage of labour and labour outcome prediction. The complete set of evaluations used for this experiment is available online. The inter- and intra-observer agreement was evaluated using proportion of agreement and kappa coefficient. Clinicians' sensitivity and specificity was computed with respect to umbilical artery pH, base deficit and to Apgar score at the fifth minute. RESULTS The overall proportion of agreement between clinicians reached 48% with 95% confidence intervals (CI) (CI: 47-50). Regarding the different classes, proportion of agreement ranged from 57% (CI: 54-60) for normal to 41% (CI: 36-46) for pathological class. The sensitivity of clinicians' majority vote to objective outcome was 39% (CI: 16-63) for the umbilical artery base deficit and 27% (CI: 16-42) for pH. The specificity was 89% (CI: 86-92) for both types of objective outcome. CONCLUSIONS The reported inter-/intra-observer variability is large and this holds irrespective of clinicians' experience or work place. The results support the need of modernized guidelines for CTG evaluation and/or objectivization and repeatability by introduction of a computerized approach that could standardize the process of CTG evaluation within the delivery ward.
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Affiliation(s)
- Lukáš Hruban
- Department of Gynecology and Obstetrics, Masaryk University Hospital, Brno, Czech Republic
| | - Jiří Spilka
- Department of Cybernetics, Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czech Republic.,Czech Institute of Informatics, Robotics and Cybernetics, Czech Technical University in Prague, Prague, Czech Republic
| | - Václav Chudáček
- Department of Cybernetics, Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czech Republic.,Czech Institute of Informatics, Robotics and Cybernetics, Czech Technical University in Prague, Prague, Czech Republic
| | - Petr Janků
- Department of Gynecology and Obstetrics, Masaryk University Hospital, Brno, Czech Republic
| | - Michal Huptych
- Department of Cybernetics, Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czech Republic
| | - Miroslav Burša
- Department of Cybernetics, Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czech Republic
| | - Adam Hudec
- Department of Gynecology and Obstetrics, University Hospital in Plzeň, Plzeň, Czech Republic
| | - Marian Kacerovský
- Department of Gynecology and Obstetrics, University Hospital in Hradec Králové, Hradec Králové, Czech Republic
| | - Michal Koucký
- Department of Gynecology and Obstetrics, University Hospital in Prague, Prague, Czech Republic
| | - Martin Procházka
- Department of Gynecology and Obstetrics, University Hospital in Olomouc, Olomouc, Czech Republic
| | - Vladimír Korečko
- Department of Gynecology and Obstetrics, University Hospital in Plzeň, Plzeň, Czech Republic
| | - Jan Seget'a
- Department of Gynecology and Obstetrics, University Hospital Ostrava, Ostrava, Czech Republic
| | - Ondřej Šimetka
- Department of Gynecology and Obstetrics, University Hospital Ostrava, Ostrava, Czech Republic.,Department of Surgical Studies, Ostrava University, Ostrava, Czech Republic
| | - Alena Měchurová
- Department for Mother and Child Care, Prague Podolí, Prague, Czech Republic
| | - Lenka Lhotská
- Department of Cybernetics, Faculty of Electrical Engineering, Czech Technical University in Prague, Prague, Czech Republic
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30
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Karvelis P, Spilka J, Georgoulas G, Chudáček V, Stylios CD, Lhotská L. Combining latent class analysis labeling with multiclass approach for fetal heart rate categorization. Physiol Meas 2015; 36:1001-24. [PMID: 25894994 DOI: 10.1088/0967-3334/36/5/1001] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The most common approach to assess fetal well-being during delivery is monitoring of fetal heart rate and uterine contractions-the cardiotocogram (CTG). Nevertheless, 40 years since the introduction of CTG to clinical practice, its evaluation is still challenging with high inter- and intra-observer variability. Therefore the development of more objective methods has become an issue of major importance in the field. Unlike the usually proposed approaches to assign classes for classification methods that rely either on biochemical parameters (e.g. pH value) or a simple aggregation of expert judgment, this work investigates the use of an alternative labeling system using latent class analysis (LCA) along with an ordinal classification scheme. The study is performed on a well-documented open-access database, where nine expert obstetricians provided CTG annotations. The LCA is proposed here to produce more objective class labels while the ordinal classification aims to explore the natural ordering, and representation of increased severity, for obtaining the final results. The results are promising suggesting that more effort should be put into this proposed approach.
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Affiliation(s)
- P Karvelis
- Laboratory of Knowledge and Intelligent Computing, Department of Computer Engineering, Technological Educational Institute of Epirus, Arta, Greece
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31
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Bruna J, Mallat S, Bacry E, Muzy JF. Intermittent process analysis with scattering moments. Ann Stat 2015. [DOI: 10.1214/14-aos1276] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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