Topological Properties of the Structural Brain Network in Autism via ϵ-Neighbor Method

Unified Topological Inference for Brain Networks in Temporal Lobe Epilepsy Using the Wasserstein Distance

Persistent homology offers a powerful tool for extracting hidden topological signals from brain networks. It captures the evolution of topological structures across multiple scales, known as filtrations, thereby revealing topological features that persist over these scales. These features are summarized in persistence diagrams, and their dissimilarity is quantified using the Wasserstein distance. However, the Wasserstein distance does not follow a known distribution, posing challenges for the application of existing parametric statistical models. To tackle this issue, we introduce a unified topological inference framework centered on the Wasserstein distance. Our approach has no explicit model and distributional assumptions. The inference is performed in a completely data driven fashion. We apply this method to resting-state functional magnetic resonance images (rs-fMRI) of temporal lobe epilepsy patients collected from two different sites: the University of Wisconsin-Madison and the Medical College of Wisconsin. Importantly, our topological method is robust to variations due to sex and image acquisition, obviating the need to account for these variables as nuisance covariates. We successfully localize the brain regions that contribute the most to topological differences. A MATLAB package used for all analyses in this study is available at https://github.com/laplcebeltrami/PH-STAT.

Motor imagery classification method based on relative wavelet packet entropy brain network and improved lasso

Motor imagery (MI) electroencephalogram (EEG) signals have a low signal-to-noise ratio, which brings challenges in feature extraction and feature selection with high classification accuracy. In this study, we proposed an approach that combined an improved lasso with relief-f to extract the wavelet packet entropy features and the topological features of the brain function network. For signal denoising and channel filtering, raw MI EEG was filtered based on an R² map, and then the wavelet soft threshold and one-to-one multi-class score common spatial pattern algorithms were used. Subsequently, the relative wavelet packet entropy and corresponding topological features of the brain network were extracted. After feature fusion, mutcorLasso and the relief-f method were applied for feature selection, followed by three classifiers and an ensemble classifier, respectively. The experiments were conducted on two public EEG datasets (BCI Competition III dataset IIIa and BCI Competition IV dataset IIa) to verify this proposed method. The results showed that the brain network topology features and feature selection methods can retain the information of EEG more effectively and reduce the computational complexity, and the average classification accuracy for both public datasets was above 90%; hence, this algorithms is suitable in MI-BCI and has potential applications in rehabilitation and other fields.

DarkASDNet: Classification of ASD on Functional MRI Using Deep Neural Network

Non-invasive whole-brain scans aid the diagnosis of neuropsychiatric disorder diseases such as autism, dementia, and brain cancer. The assessable analysis for autism spectrum disorders (ASD) is rationally challenging due to the limitations of publicly available datasets. For diagnostic or prognostic tools, functional Magnetic Resonance Imaging (fMRI) exposed affirmation to the biomarkers in neuroimaging research because of fMRI pickup inherent connectivity between the brain and regions. There are profound studies in ASD with introducing machine learning or deep learning methods that have manifested advanced steps for ASD predictions based on fMRI data. However, utmost antecedent models have an inadequacy in their capacity to manipulate performance metrics such as accuracy, precision, recall, and F1-score. To overcome these problems, we proposed an avant-garde DarkASDNet, which has the competence to extract features from a lower level to a higher level and bring out promising results. In this work, we considered 3D fMRI data to predict binary classification between ASD and typical control (TC). Firstly, we pre-processed the 3D fMRI data by adopting proper slice time correction and normalization. Then, we introduced a novel DarkASDNet which surpassed the benchmark accuracy for the classification of ASD. Our model's outcomes unveil that our proposed method established state-of-the-art accuracy of 94.70% to classify ASD vs. TC in ABIDE-I, NYU dataset. Finally, we contemplated our model by performing evaluation metrics including precision, recall, F1-score, ROC curve, and AUC score, and legitimize by distinguishing with recent literature descriptions to vindicate our outcomes. The proposed DarkASDNet architecture provides a novel benchmark approach for ASD classification using fMRI processed data.