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Jeba Derwin D, Jeba Singh O, Priestly Shan B, Uma Maheswari K, Lavanya D. An efficient multi-level pre-processing algorithm for the enhancement of dermoscopy images in melanoma detection. Med Biol Eng Comput 2023; 61:2921-2938. [PMID: 37530886 DOI: 10.1007/s11517-023-02897-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Accepted: 04/13/2023] [Indexed: 08/03/2023]
Abstract
In this paper, a multi-level algorithm for pre-processing of dermoscopy images is proposed, which helps in improving the quality of the raw images, making it suitable for skin lesion detection. This multi-level pre-processing method has a positive impact on automated skin lesion segmentation using Regularized Extreme Learning Machine. Raw images are subjected to de-noising, illumination correction, contrast enhancement, sharpening, reflection removal, and virtual shaving before the skin lesion segmentation. The Non-Local Means (NLM) filter with lowest Blind Reference less Image Spatial Quality Evaluator (BRISQUE) score exhibits better de-noising of dermoscopy images. To suppress uneven illumination, gamma correction is subjected to the denoised image. The Robust Image Contrast Enhancement (RICE) algorithm is used for contrast enhancement, and produces enhanced images with better structural preservation and negligible loss of information. Unsharp masking for sharpening exhibits low BRISQUE scores for better sharpening of fine details in an image. Output images produced by the phase congruency-based method in virtual shaving show high similarity with ground truth images as the hair is removed completely from the input images. Obtained scores at each stage of pre-processing framework show that the performance is superior compared to all the existing methods, both qualitatively and quantitatively, in terms of uniform contrast, preservation of information content, removal of undesired information, and elimination of artifacts in melanoma images. The output of the proposed system is assessed qualitatively and quantitatively with and without pre-processing of dermoscopy images. From the overall evaluation results, it is found that the segmentation of skin lesion is more efficient using Regularized Extreme Learning Machine if the multi-level pre-processing steps are used in proper sequence.
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Affiliation(s)
| | - O Jeba Singh
- Alliance University, Bangalore, Karnataka, India
| | | | - K Uma Maheswari
- SRM-TRP Engineering College, Tiruchirappalli, Tamil Nadu, India
| | - D Lavanya
- SRM-TRP Engineering College, Tiruchirappalli, Tamil Nadu, India
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Wang S, Celebi ME, Zhang YD, Yu X, Lu S, Yao X, Zhou Q, Miguel MG, Tian Y, Gorriz JM, Tyukin I. Advances in Data Preprocessing for Biomedical Data Fusion: An Overview of the Methods, Challenges, and Prospects. INFORMATION FUSION 2021; 76:376-421. [DOI: 10.1016/j.inffus.2021.07.001] [Citation(s) in RCA: 49] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/30/2023]
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Latha S, Samiappan D, Kumar R. Carotid artery ultrasound image analysis: A review of the literature. Proc Inst Mech Eng H 2020; 234:417-443. [PMID: 31960771 DOI: 10.1177/0954411919900720] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Stroke is one of the prominent causes of death in the recent days. The existence of susceptible plaque in the carotid artery can be used in ascertaining the possibilities of cardiovascular diseases and long-term disabilities. The imaging modality used for early screening of the disease is B-mode ultrasound image of the person in the artery area. The objective of this article is to give a widespread review of the imaging modes and methods used for studying the carotid artery for identifying stroke, atherosclerosis and related cardiovascular diseases. We encompass the review in methods used for artery wall tracking, intima-media, and lumen segmentation which will help in finding the extent of the disease. Due to the characteristics of the imaging modality used, the images have speckle noise which worsens the image quality. Adaptive homomorphic filtering with wavelet and contourlet transforms, Levy Shrink, gamma distribution were used for image denoising. Learning-based neural network approaches for denoising give better edge preservation. Domain knowledge-based segmentation approaches have proved to provide more accurate intima-media thickness measurements. There is a requirement of useful fully automatic segmentation approaches, 3D, 4D systems, and plaque motion analysis. Taking into consideration the image priors like geometry, imaging physics, intensity and temporal data, image analysis has to be performed. Encouragingly more research has focused on content-specific segmentation and classification techniques. With the evaluation of machine learning algorithms, classifying the image as with or without a fat deposit has gained better accuracy and sensitivity. Machine learning-based approaches like self-organizing map, k-nearest neighborhood and support vector machine achieve promising accuracy and sensitivity in classification. The literature reveals that there is more scope in identifying a patient-specific model in a fully automatic manner.
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Affiliation(s)
- S Latha
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Chennai, India
| | - Dhanalakshmi Samiappan
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Chennai, India
| | - R Kumar
- Department of Electronics and Communication Engineering, SRM Institute of Science and Technology, Chennai, India
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Samiappan D, Latha S, Rao T, Verma D, Sriharsha CSA. Enhancing Machine Learning Aptitude Using Significant Cluster Identification for Augmented Image Refining. INT J PATTERN RECOGN 2019. [DOI: 10.1142/s021800142051009x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Enhancing the image to remove noise, preserving the useful features and edges are the most important tasks in image analysis. In this paper, Significant Cluster Identification for Maximum Edge Preservation (SCI-MEP), which works in parallel with clustering algorithms and improved efficiency of the machine learning aptitude, is proposed. Affinity propagation (AP) is a base method to obtain clusters from a learnt dictionary, with an adaptive window selection, which are then refined using SCI-MEP to preserve the semantic components of the image. Since only the significant clusters are worked upon, the computational time drastically reduces. The flexibility of SCI-MEP allows it to be integrated with any clustering algorithm to improve its efficiency. The method is tested and verified to remove Gaussian noise, rain noise and speckle noise from images. Our results have shown that SCI-MEP considerably optimizes the existing algorithms in terms of performance evaluation metrics.
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Affiliation(s)
- Dhanalakshmi Samiappan
- ECE Department, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, India
| | - S. Latha
- ECE Department, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, India
| | - T. Rama Rao
- ECE Department, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, India
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Abstract
To effectively balance speckle smoothing and preservation of edges and radiation, a novel anisotropic diffusion filter was developed that uses a directional coherent coefficient. The proposed filter effectively improves the edge detection operator of a traditional anisotropic diffusion filter. The new edge detection operator calculates 16 direction coherence coefficients to avoid the interference of the edge direction. For the diffusion function, the proposed method directly uses the detected directional coherent edge as the diffusion coefficient, which simplifies the calculation of the diffusion function and avoids the adverse effects of inaccurate estimation of the diffusion function threshold for a traditional anisotropic diffusion filter. The influence of the number of iterations and time steps on the proposed filter was analyzed. A series of experiments was conducted with a simulated image and three real synthetic-aperture radar images from different sensors. The results confirmed that the proposed method not only significantly reduces speckle but also effectively preserves the edge and radiation information of images.
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Mei K, Hu B, Fei B, Qin B. Phase asymmetry ultrasound despeckling with fractional anisotropic diffusion and total variation. IEEE TRANSACTIONS ON IMAGE PROCESSING : A PUBLICATION OF THE IEEE SIGNAL PROCESSING SOCIETY 2019; 29:10.1109/TIP.2019.2953361. [PMID: 31751240 PMCID: PMC7370834 DOI: 10.1109/tip.2019.2953361] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
We propose an ultrasound speckle filtering method for not only preserving various edge features but also filtering tissue-dependent complex speckle noises in ultrasound images. The key idea is to detect these various edges using a phase congruence-based edge significance measure called phase asymmetry (PAS), which is invariant to the intensity amplitude of edges and takes 0 in non-edge smooth regions and 1 at the idea step edge, while also taking intermediate values at slowly varying ramp edges. By leveraging the PAS metric in designing weighting coefficients to maintain a balance between fractional-order anisotropic diffusion and total variation (TV) filters in TV cost function, we propose a new fractional TV framework to not only achieve the best despeckling performance with ramp edge preservation but also reduce the staircase effect produced by integral-order filters. Then, we exploit the PAS metric in designing a new fractional-order diffusion coefficient to properly preserve low-contrast edges in diffusion filtering. Finally, different from fixed fractional-order diffusion filters, an adaptive fractional order is introduced based on the PAS metric to enhance various weak edges in the spatially transitional areas between objects. The proposed fractional TV model is minimized using the gradient descent method to obtain the final denoised image. The experimental results and real application of ultrasound breast image segmentation show that the proposed method outperforms other state-of-the-art ultrasound despeckling filters for both speckle reduction and feature preservation in terms of visual evaluation and quantitative indices. The best scores on feature similarity indices have achieved 0.867, 0.844 and 0.834 under three different levels of noise, while the best breast ultrasound segmentation accuracy in terms of the mean and median dice similarity coefficient are 96.25% and 96.15%, respectively.
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Affiliation(s)
- Kunqiang Mei
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Bin Hu
- Department of Ultrasound in Medicine, Shanghai Jiao Tong University Affiliated Sixth People’s Hospital, Shanghai Institute of Ultrasound in Medicine, Shanghai 200233, China
| | - Baowei Fei
- Department of Bioengineering, Erik Jonsson School of Engineering and Computer Science, The University of Texas at Dallas, Richardson, TX 75080 USA
| | - Binjie Qin
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
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Anisotropic Diffusion Based Multiplicative Speckle Noise Removal. SENSORS 2019; 19:s19143164. [PMID: 31323876 PMCID: PMC6679264 DOI: 10.3390/s19143164] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Revised: 07/06/2019] [Accepted: 07/13/2019] [Indexed: 11/17/2022]
Abstract
Multiplicative speckle noise removal is a challenging task in image processing. Motivated by the performance of anisotropic diffusion in additive noise removal and the structure of the standard deviation of a compressed speckle noisy image, we address this problem with anisotropic diffusion theories. Firstly, an anisotropic diffusion model based on image statistics, including information on the gradient of the image, gray levels, and noise standard deviation of the image, is proposed. Although the proposed model can effectively remove multiplicative speckle noise, it does not consider the noise at the edge during the denoising process. Hence, we decompose the divergence term in order to make the diffusion at the edge occur along the boundaries rather than perpendicular to the boundaries, and improve the model to meet our requirements. Secondly, the iteration stopping criteria based on kurtosis and correlation in view of the lack of ground truth in real image experiments, is proposed. The optimal values of the parameters in the model are obtained by learning. To improve the denoising effect, post-processing is performed. Finally, the simulation results show that the proposed model can effectively remove the speckle noise and retain minute details of the images for the real ultrasound and RGB color images.
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Mishra D, Chaudhury S, Sarkar M, Soin AS. Ultrasound Image Enhancement Using Structure Oriented Adversarial Network. IEEE SIGNAL PROCESSING LETTERS 2018; 25:1349-1353. [DOI: 10.1109/lsp.2018.2858147] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/19/2023]
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Bhugra S, Mishra D, Anupama A, Chaudhury S, Lall B, Chugh A. Automatic Quantification of Stomata for High-Throughput Plant Phenotyping. 2018 24TH INTERNATIONAL CONFERENCE ON PATTERN RECOGNITION (ICPR) 2018. [DOI: 10.1109/icpr.2018.8546196] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/19/2023]
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Mishra D, Tyagi S, Chaudhury S, Sarkar M, Singh Soin A. Despeckling CNN with Ensembles of Classical Outputs. 2018 24TH INTERNATIONAL CONFERENCE ON PATTERN RECOGNITION (ICPR) 2018. [DOI: 10.1109/icpr.2018.8545031] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/19/2023]
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