A Hybrid LDA+gCCA Model for fMRI Data Classification and Visualization

Classification of Task-State fMRI Data Based on Circle-EMD and Machine Learning

In the research work of the brain-computer interface and the function of human brain work, the state classification of multitask state fMRI data is a problem. The fMRI signal of the human brain is a nonstationary signal with many noise effects and interference. Based on the commonly used nonstationary signal analysis method, Hilbert-Huang transform (HHT), we propose an improved circle-EMD algorithm to suppress the end effect. The algorithm can extract different intrinsic mode functions (IMFs), decompose the fMRI data to filter out low frequency and other redundant noise signals, and more accurately reflect the true characteristics of the original signal. For the filtered fMRI signal, we use three existing different machine learning methods: logistic regression (LR), support vector machine (SVM), and deep neural network (DNN) to achieve effective classification of different task states. The experiment compares the results of these machine learning methods and confirms that the deep neural network has the highest accuracy for task-state fMRI data classification and the effectiveness of the improved circle-EMD algorithm.

The Impact of Emotional Music on Active ROI in Patients with Depression Based on Deep Learning: A Task-State fMRI Study

With the continuous development of science, more and more research results have proved that machine learning is capable of diagnosing and studying the major depressive disorder (MDD) in the brain. We propose a deep learning network with multibranch and local residual feedback, for four different types of functional magnetic resonance imaging (fMRI) data produced by depressed patients and control people under the condition of listening to positive- and negative-emotions music. We use the large convolution kernel of the same size as the correlation matrix to match the features and obtain the results of feature matching of 264 regions of interest (ROIs). Firstly, four-dimensional fMRI data are used to generate the two-dimensional correlation matrix of one person’s brain based on ROIs and then processed by the threshold value which is selected according to the characteristics of complex network and small-world network. After that, the deep learning model in this paper is compared with support vector machine (SVM), logistic regression (LR), k-nearest neighbor (kNN), a common deep neural network (DNN), and a deep convolutional neural network (CNN) for classification. Finally, we further calculate the matched ROIs from the intermediate results of our deep learning model which can help related fields further explore the pathogeny of depression patients.

FaRoC: Fast and Robust Supervised Canonical Correlation Analysis for Multimodal Omics Data

One of the main problems associated with high dimensional multimodal real life data sets is how to extract relevant and significant features. In this regard, a fast and robust feature extraction algorithm, termed as FaRoC, is proposed, integrating judiciously the merits of canonical correlation analysis (CCA) and rough sets. The proposed method extracts new features sequentially from two multidimensional data sets by maximizing their relevance with respect to class label and significance with respect to already-extracted features. To generate canonical variables sequentially, an analytical formulation is introduced to establish the relation between regularization parameters and CCA. The formulation enables the proposed method to extract required number of correlated features sequentially with lesser computational cost as compared to existing methods. To compute both significance and relevance measures of a feature, the concept of hypercuboid equivalence partition matrix of rough hypercuboid approach is used. It also provides an efficient way to find optimum regularization parameters employed in CCA. The efficacy of the proposed FaRoC algorithm, along with a comparison with other existing methods, is extensively established on several real life data sets.

A decomposition model and voxel selection framework for fMRI analysis to predict neural response of visual stimuli

This paper presents an fMRI signal analysis methodology using geometric mean curve decomposition (GMCD) and mutual information-based voxel selection framework. Previously, the fMRI signal analysis has been conducted using empirical mean curve decomposition (EMCD) model and voxel selection on raw fMRI signal. The erstwhile methodology loses frequency component, while the latter methodology suffers from signal redundancy. Both challenges are addressed by our methodology in which the frequency component is considered by decomposing the raw fMRI signal using geometric mean rather than arithmetic mean and the voxels are selected from EMCD signal using GMCD components, rather than raw fMRI signal. The proposed methodologies are adopted for predicting the neural response. Experimentations are conducted in the openly available fMRI data of six subjects, and comparisons are made with existing decomposition models and voxel selection frameworks. Subsequently, the effect of degree of selected voxels and the selection constraints are analyzed. The comparative results and the analysis demonstrate the superiority and the reliability of the proposed methodology.