Robust Cell Detection of Histopathological Brain Tumor Images Using Sparse Reconstruction and Adaptive Dictionary Selection

Assessment of brain tumor detection techniques and recommendation of neural network

OBJECTIVES

Brain tumor classification is amongst the most complex and challenging jobs in the computer domain. The latest advances in brain tumor detection systems (BTDS) are presented as they can inspire new researchers to deliver new architectures for effective and efficient tumor detection. Here, the data of the multi-modal brain tumor segmentation task is employed, which has been registered, skull stripped, and histogram matching is conducted with the ferrous volume of high contrast.

METHODS

This research further configures a capsule network (CapsNet) for brain tumor classification. Results of the latest deep neural network (NN) architectures for tumor detection are compared and presented. The VGG16 and CapsNet architectures yield the highest f1-score and precision values, followed by VGG19. Overall, ResNet152, MobileNet, and MobileNetV2 give us the lowest f1-score.

RESULTS

The VGG16 and CapsNet have produced outstanding results. However, VGG16 and VGG19 are more profound architecture, resulting in slower computation speed. The research then recommends the latest suitable NN for effective brain tumor detection.

CONCLUSIONS

Finally, the work concludes with future directions and potential new architectures for tumor detection.

Sparse reconstruction based on dictionary learning and group structure strategy for cone-beam X-ray luminescence computed tomography

As a dual-modal imaging technology that has emerged in recent years, cone-beam X-ray luminescence computed tomography (CB-XLCT) has exhibited promise as a tool for the early three-dimensional detection of tumors in small animals. However, due to the challenges imposed by the low absorption and high scattering of light in tissues, the CB-XLCT reconstruction problem is a severely ill-conditioned inverse problem, rendering it difficult to obtain satisfactory reconstruction results. In this study, a strategy that utilizes dictionary learning and group structure (DLGS) is proposed to achieve satisfactory CB-XLCT reconstruction performance. The group structure is employed to account for the clustering of nanophosphors in specific regions within the organism, which can enhance the interrelation of elements in the same group. Furthermore, the dictionary learning strategy is implemented to effectively capture sparse features. The performance of the proposed method was evaluated through numerical simulations and in vivo experiments. The experimental results demonstrate that the proposed method achieves superior reconstruction performance in terms of location accuracy, target shape, robustness, dual-source resolution, and in vivo practicability.

Automatic Brain Tumor Classification via Lion Plus Dragonfly Algorithm

Denoising, skull stripping, segmentation, feature extraction, and classification are five important processes in this paper's development of a brain tumor classification model. The brain tumor image will be imposed first using the entropy-based trilateral filter to de-noising and this image is imposed to skull stripping by means of morphological partition and Otsu thresholding. Adaptive contrast limited fuzzy adaptive histogram equalization (CLFAHE) is also used in the segmentation process. The gray-level co-occurrence matrix (GLCM) characteristics are derived from the segmented image. The collected GLCM features are used in a hybrid classifier that combines the neural network (NN) and deep belief network (DBN) ideas. As an innovation, the hidden neurons of the two classifiers are modified ideally to improve the prediction model's accuracy. The hidden neurons are optimized using a unique hybrid optimization technique known as lion with dragonfly separation update (L-DSU), which integrates the approaches from both DA and LA. Finally, the suggested model's performance is compared to that of the standard models concerning certain performance measures.

Pathomic Fusion: An Integrated Framework for Fusing Histopathology and Genomic Features for Cancer Diagnosis and Prognosis

Cancer diagnosis, prognosis, mymargin and therapeutic response predictions are based on morphological information from histology slides and molecular profiles from genomic data. However, most deep learning-based objective outcome prediction and grading paradigms are based on histology or genomics alone and do not make use of the complementary information in an intuitive manner. In this work, we propose Pathomic Fusion, an interpretable strategy for end-to-end multimodal fusion of histology image and genomic (mutations, CNV, RNA-Seq) features for survival outcome prediction. Our approach models pairwise feature interactions across modalities by taking the Kronecker product of unimodal feature representations, and controls the expressiveness of each representation via a gating-based attention mechanism. Following supervised learning, we are able to interpret and saliently localize features across each modality, and understand how feature importance shifts when conditioning on multimodal input. We validate our approach using glioma and clear cell renal cell carcinoma datasets from the Cancer Genome Atlas (TCGA), which contains paired whole-slide image, genotype, and transcriptome data with ground truth survival and histologic grade labels. In a 15-fold cross-validation, our results demonstrate that the proposed multimodal fusion paradigm improves prognostic determinations from ground truth grading and molecular subtyping, as well as unimodal deep networks trained on histology and genomic data alone. The proposed method establishes insight and theory on how to train deep networks on multimodal biomedical data in an intuitive manner, which will be useful for other problems in medicine that seek to combine heterogeneous data streams for understanding diseases and predicting response and resistance to treatment. Code and trained models are made available at: https://github.com/mahmoodlab/PathomicFusion.

Convolutional neural network initialized active contour model with adaptive ellipse fitting for nuclear segmentation on breast histopathological images

Automated detection and segmentation of nuclei from high-resolution histopathological images is a challenging problem owing to the size and complexity of digitized histopathologic images. In the context of breast cancer, the modified Bloom-Richardson Grading system is highly correlated with the morphological and topological nuclear features are highly correlated with Modified Bloom-Richardson grading. Therefore, to develop a computer-aided prognosis system, automated detection and segmentation of nuclei are critical prerequisite steps. We present a method for automated detection and segmentation of breast cancer nuclei named a convolutional neural network initialized active contour model with adaptive ellipse fitting (CoNNACaeF). The CoNNACaeF model is able to detect and segment nuclei simultaneously, which consist of three different modules: convolutional neural network (CNN) for accurate nuclei detection, (2) region-based active contour (RAC) model for subsequent nuclear segmentation based on the initial CNN-based detection of nuclear patches, and (3) adaptive ellipse fitting for overlapping solution of clumped nuclear regions. The performance of the CoNNACaeF model is evaluated on three different breast histological data sets, comprising a total of 257 H&E-stained images. The model is shown to have improved detection accuracy of F-measure 80.18%, 85.71%, and 80.36% and average area under precision-recall curves (AveP) 77%, 82%, and 74% on a total of 3 million nuclei from 204 whole slide images from three different datasets. Additionally, CoNNACaeF yielded an F-measure at 74.01% and 85.36%, respectively, for two different breast cancer datasets. The CoNNACaeF model also outperformed the three other state-of-the-art nuclear detection and segmentation approaches, which are blue ratio initialized local region active contour, iterative radial voting initialized local region active contour, and maximally stable extremal region initialized local region active contour models.