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Mukaddim RA, Varghese T. Spatiotemporal Coherence Weighting for In Vivo Cardiac Photoacoustic Image Beamformation. IEEE TRANSACTIONS ON ULTRASONICS, FERROELECTRICS, AND FREQUENCY CONTROL 2021; 68:586-598. [PMID: 32795968 PMCID: PMC8011040 DOI: 10.1109/tuffc.2020.3016900] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Photoacoustic (PA) image reconstruction generally utilizes delay-and-sum (DAS) beamforming of received acoustic waves from tissue irradiated with optical illumination. However, nonadaptive DAS reconstructed cardiac PA images exhibit temporally varying noise which causes reduced myocardial PA signal specificity, making image interpretation difficult. Adaptive beamforming algorithms such as minimum variance (MV) with coherence factor (CF) weighting have been previously reported to improve the DAS image quality. In this article, we report on an adaptive beamforming algorithm by extending CF weighting to the temporal domain for preclinical cardiac PA imaging (PAI). The proposed spatiotemporal coherence factor (STCF) considers multiple temporally adjacent image acquisition events during beamforming and cancels out signals with low spatial coherence and temporal coherence, resulting in higher background noise cancellation while preserving the main features of interest (myocardial wall) in the resultant PA images. STCF has been validated using the numerical simulations and in vivo ECG and respiratory-signal-gated cardiac PAI in healthy murine hearts. The numerical simulation results demonstrate that STCF weighting outperforms DAS and MV beamforming with and without CF weighting under different levels of inherent contrast, acoustic attenuation, optical scattering, and signal-to-noise (SNR) of channel data. Performance improvement is attributed to higher sidelobe reduction (at least 5 dB) and SNR improvement (at least 10 dB). Improved myocardial signal specificity and higher signal rejection in the left ventricular chamber and acoustic gel region are observed with STCF in cardiac PAI.
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Kothapalli SR, Sonn GA, Choe JW, Nikoozadeh A, Bhuyan A, Park KK, Cristman P, Fan R, Moini A, Lee BC, Wu J, Carver TE, Trivedi D, Shiiba L, Steinberg I, Huland DM, Rasmussen MF, Liao JC, Brooks JD, Khuri-Yakub PT, Gambhir SS. Simultaneous transrectal ultrasound and photoacoustic human prostate imaging. Sci Transl Med 2020; 11:11/507/eaav2169. [PMID: 31462508 DOI: 10.1126/scitranslmed.aav2169] [Citation(s) in RCA: 71] [Impact Index Per Article: 14.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2018] [Accepted: 07/26/2019] [Indexed: 11/02/2022]
Abstract
Imaging technologies that simultaneously provide anatomical, functional, and molecular information are emerging as an attractive choice for disease screening and management. Since the 1980s, transrectal ultrasound (TRUS) has been routinely used to visualize prostatic anatomy and guide needle biopsy, despite limited specificity. Photoacoustic imaging (PAI) provides functional and molecular information at ultrasonic resolution based on optical absorption. Combining the strengths of TRUS and PAI approaches, we report the development and bench-to-bedside translation of an integrated TRUS and photoacoustic (TRUSPA) device. TRUSPA uses a miniaturized capacitive micromachined ultrasonic transducer array for simultaneous imaging of anatomical and molecular optical contrasts [intrinsic: hemoglobin; extrinsic: intravenous indocyanine green (ICG)] of the human prostate. Hemoglobin absorption mapped vascularity of the prostate and surroundings, whereas ICG absorption enhanced the intraprostatic photoacoustic contrast. Future work using the TRUSPA device for biomarker-specific molecular imaging may enable a fundamentally new approach to prostate cancer diagnosis, prognostication, and therapeutic monitoring.
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Affiliation(s)
- Sri-Rajasekhar Kothapalli
- Molecular Imaging Program at Stanford and Bio-X Program, Department of Radiology, Stanford University School of Medicine, Palo Alto, CA 94305, USA.,Department of Biomedical Engineering, The Pennsylvania State University, University Park, PA 16802, USA.,Penn State Cancer Institute, Pennsylvania State University College of Medicine, Hershey, PA 17033, USA
| | - Geoffrey A Sonn
- Department of Urology, Stanford University School of Medicine, Palo Alto, CA 94305, USA
| | - Jung Woo Choe
- Department of Electrical Engineering, Stanford University, Palo Alto, CA 94305, USA
| | - Amin Nikoozadeh
- Department of Electrical Engineering, Stanford University, Palo Alto, CA 94305, USA
| | - Anshuman Bhuyan
- Department of Electrical Engineering, Stanford University, Palo Alto, CA 94305, USA
| | - Kwan Kyu Park
- Department of Electrical Engineering, Stanford University, Palo Alto, CA 94305, USA
| | - Paul Cristman
- Department of Electrical Engineering, Stanford University, Palo Alto, CA 94305, USA
| | - Richard Fan
- Department of Urology, Stanford University School of Medicine, Palo Alto, CA 94305, USA
| | - Azadeh Moini
- Department of Electrical Engineering, Stanford University, Palo Alto, CA 94305, USA
| | - Byung Chul Lee
- Department of Electrical Engineering, Stanford University, Palo Alto, CA 94305, USA
| | - Jonathan Wu
- Department of Urology, Stanford University School of Medicine, Palo Alto, CA 94305, USA
| | - Thomas E Carver
- Edward L. Ginzton Laboratory, Center for Nanoscale Science and Engineering, Stanford University, Palo Alto, CA 94305, USA
| | - Dharati Trivedi
- Department of Urology, Stanford University School of Medicine, Palo Alto, CA 94305, USA
| | - Lillian Shiiba
- Department of Urology, Stanford University School of Medicine, Palo Alto, CA 94305, USA
| | - Idan Steinberg
- Molecular Imaging Program at Stanford and Bio-X Program, Department of Radiology, Stanford University School of Medicine, Palo Alto, CA 94305, USA
| | - David M Huland
- Molecular Imaging Program at Stanford and Bio-X Program, Department of Radiology, Stanford University School of Medicine, Palo Alto, CA 94305, USA
| | - Morten F Rasmussen
- Department of Electrical Engineering, Stanford University, Palo Alto, CA 94305, USA
| | - Joseph C Liao
- Department of Urology, Stanford University School of Medicine, Palo Alto, CA 94305, USA
| | - James D Brooks
- Department of Urology, Stanford University School of Medicine, Palo Alto, CA 94305, USA
| | - Pierre T Khuri-Yakub
- Department of Electrical Engineering, Stanford University, Palo Alto, CA 94305, USA
| | - Sanjiv S Gambhir
- Molecular Imaging Program at Stanford and Bio-X Program, Department of Radiology, Stanford University School of Medicine, Palo Alto, CA 94305, USA. .,Department of Bioengineering and Department of Materials Science & Engineering, Stanford University School of Medicine, Palo Alto, CA 94305, USA
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Joseph Francis K, Boink YE, Dantuma M, Ajith Singh MK, Manohar S, Steenbergen W. Tomographic imaging with an ultrasound and LED-based photoacoustic system. BIOMEDICAL OPTICS EXPRESS 2020; 11:2152-2165. [PMID: 32341873 PMCID: PMC7173893 DOI: 10.1364/boe.384548] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2019] [Revised: 01/15/2020] [Accepted: 01/22/2020] [Indexed: 05/05/2023]
Abstract
Pulsed lasers in photoacoustic tomography systems are expensive, which limit their use to a few clinics and small animal labs. We present a method to realize tomographic ultrasound and photoacoustic imaging using a commercial LED-based photoacoustic and ultrasound system. We present two illumination configurations using LED array units and an optimal number of angular views for tomographic reconstruction. The proposed method can be a cost-effective solution for applications demanding tomographic imaging and can be easily integrated into conventional linear array-based ultrasound systems. We present a potential application for finger joint imaging in vivo, which can be used for point-of-care rheumatoid arthritis diagnosis and monitoring.
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Affiliation(s)
- Kalloor Joseph Francis
- Biomedical Photonic Imaging Group, Technical Medical Center, University of Twente, The Netherlands
- Multi-Modality Medical Imaging Group, Technical Medical Center, University of Twente, The Netherlands
| | - Yoeri E. Boink
- Multi-Modality Medical Imaging Group, Technical Medical Center, University of Twente, The Netherlands
- Department of Applied Mathematics, University of Twente, The Netherlands
| | - Maura Dantuma
- Biomedical Photonic Imaging Group, Technical Medical Center, University of Twente, The Netherlands
- Multi-Modality Medical Imaging Group, Technical Medical Center, University of Twente, The Netherlands
| | - Mithun Kuniyil Ajith Singh
- Research and Business Development Division, CYBERDYNE INC, Cambridge Innovation Center, Rotterdam, The Netherlands
| | - Srirang Manohar
- Multi-Modality Medical Imaging Group, Technical Medical Center, University of Twente, The Netherlands
| | - Wiendelt Steenbergen
- Biomedical Photonic Imaging Group, Technical Medical Center, University of Twente, The Netherlands
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Francis KJ, Chinni B, Channappayya SS, Pachamuthu R, Dogra VS, Rao N. Multiview spatial compounding using lens-based photoacoustic imaging system. PHOTOACOUSTICS 2019; 13:85-94. [PMID: 30949434 PMCID: PMC6430722 DOI: 10.1016/j.pacs.2019.01.002] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2018] [Revised: 12/18/2018] [Accepted: 01/09/2019] [Indexed: 05/07/2023]
Abstract
Recently, an acoustic lens has been proposed for volumetric focusing as an alternative to conventional reconstruction algorithms in Photoacoustic (PA) Imaging. Acoustic lens can significantly reduce computational complexity and facilitate the implementation of real-time and cost-effective systems. However, due to the fixed focal length of the lens, the Point Spread Function (PSF) of the imaging system varies spatially. Furthermore, the PSF is asymmetric, with the lateral resolution being lower than the axial resolution. For many medical applications, such as in vivo thyroid, breast and small animal imaging, multiple views of the target tissue at varying angles are possible. This can be exploited to reduce the asymmetry and spatial variation of system the PSF with simple spatial compounding. In this article, we present a formulation and experimental evaluation of this technique. PSF improvement in terms of resolution and Signal to Noise Ratio (SNR) with the proposed spatial compounding is evaluated through simulation. Overall image quality improvement is demonstrated with experiments on phantom and ex vivo tissue. When multiple views are not possible, an alternative residual refocusing algorithm is proposed. The performances of these two methods, both separately and in conjunction, are compared and their practical implications are discussed.
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Affiliation(s)
- Kalloor Joseph Francis
- Department of Electrical Engineering, Indian Institute of Technology Hyderabad, 502285, India
- Corresponding author.
| | - Bhargava Chinni
- Department of Imaging Sciences, University of Rochester Medical Center, 601 Elmwood Ave, Rochester, NY 14642, USA
| | | | - Rajalakshmi Pachamuthu
- Department of Electrical Engineering, Indian Institute of Technology Hyderabad, 502285, India
| | - Vikram S. Dogra
- Department of Imaging Sciences, University of Rochester Medical Center, 601 Elmwood Ave, Rochester, NY 14642, USA
| | - Navalgund Rao
- Chester F. Carlson Center for Imaging Science, Rochester Institute of Technology, 54 Lomb Memorial Drive, Rochester, NY 14623, USA
- Principal corresponding author.
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Pourtaherian A, Scholten HJ, Kusters L, Zinger S, Mihajlovic N, Kolen AF, Zuo F, Ng GC, Korsten HHM, de With PHN. Medical Instrument Detection in 3-Dimensional Ultrasound Data Volumes. IEEE TRANSACTIONS ON MEDICAL IMAGING 2017; 36:1664-1675. [PMID: 28410101 DOI: 10.1109/tmi.2017.2692302] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Ultrasound-guided medical interventions are broadly applied in diagnostics and therapy, e.g., regional anesthesia or ablation. A guided intervention using 2-D ultrasound is challenging due to the poor instrument visibility, limited field of view, and the multi-fold coordination of the medical instrument and ultrasound plane. Recent 3-D ultrasound transducers can improve the quality of the image-guided intervention if an automated detection of the needle is used. In this paper, we present a novel method for detecting medical instruments in 3-D ultrasound data that is solely based on image processing techniques and validated on various ex vivo and in vivo data sets. In the proposed procedure, the physician is placing the 3-D transducer at the desired position, and the image processing will automatically detect the best instrument view, so that the physician can entirely focus on the intervention. Our method is based on the classification of instrument voxels using volumetric structure directions and robust approximation of the primary tool axis. A novel normalization method is proposed for the shape and intensity consistency of instruments to improve the detection. Moreover, a novel 3-D Gabor wavelet transformation is introduced and optimally designed for revealing the instrument voxels in the volume, while remaining generic to several medical instruments and transducer types. Experiments on diverse data sets, including in vivo data from patients, show that for a given transducer and an instrument type, high detection accuracies are achieved with position errors smaller than the instrument diameter in the 0.5-1.5-mm range on average.
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Moradi H, Tang S, Salcudean SE. Deconvolution based photoacoustic reconstruction with sparsity regularization. OPTICS EXPRESS 2017. [PMID: 29518995 DOI: 10.1364/oe.25.002771] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
In most photoacoustic tomography (PAT) reconstruction approaches, it is assumed that the receiving transducers have omnidirectional response and can fully surround the region of interest. These assumptions are not satisfied in practice. To deal with these limitations, we present a novel deconvolution based photoacoustic reconstruction with sparsity regularization (DPARS) technique. The DPARS algorithm is a semi-analytical reconstruction approach in which the projections of the absorber distribution derived from a deconvolution-based method are computed and used to generate a large linear system of equations. In these projections, computed over limited viewing angles, the directivity effect of the transducer is taken into account. The distribution of absorbers is computed using a sparse representation of absorber coefficients obtained from the discrete cosine transform. This sparse representation helps improve the numerical conditioning of the system of equations and reduces the computation time of the deconvolution-based approach by one order of magnitude relative to Tikhonov regularization. The algorithm has been tested in simulations, and using two-dimensional and three-dimensional experimental data obtained with a conventional ultrasound transducer. The results show that DPARS, when evaluated using contrast-to-noise ratio and root-mean-square errors, outperforms the conventional delay-and-sum (DAS) reconstruction method.
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